mRNA_L-elsbetiae_contig18244.5276.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18244.5276.1
Unique NamemRNA_L-elsbetiae_contig18244.5276.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18244.5276.1 vs. uniprot
Match: A0A6H5JXB1_9PHAE (Ku domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXB1_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.400e-28
Identity = 55/73 (75.34%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   43 DYIPVNTVDEESLKLPEEPPSLRVIGSAPASTVRRHFYMDDTLVVVPEPGSGQAAGAIASLANALRNLGQVCV 261
            DYIPVN+VDE SLKLP+EPPSL+V+G  P+S+V RHFYMDDT VV+PEPGSGQAAGAI+SL++A+RNL QV V
Sbjct:  282 DYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVVLPEPGSGQAAGAISSLSSAMRNLDQVAV 354
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BLAST of mRNA_L-elsbetiae_contig18244.5276.1 vs. uniprot
Match: W1PH02_AMBTC (Ku domain-containing protein n=2 Tax=Amborella trichopoda TaxID=13333 RepID=W1PH02_AMBTC)

HSP 1 Score: 57.4 bits (137), Expect = 1.770e-7
Identity = 26/71 (36.62%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   49 IPVNTVDEESLKLPEEPPSLRVIGSAPASTVRRHFYMDDTLVVVPEPGSGQAAGAIASLANALRNLGQVCV 261
            +P+++ + E+LK   E   ++++G   AS +RRH YM DT V +PEPG+ +A  A++++A A++N  +V +
Sbjct:  295 VPISSAELEALKFKPEK-GIKLLGFTNASNIRRHQYMRDTYVFIPEPGNRKAILAVSTMARAMKNANKVSI 364
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18244.5276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXB1_9PHAE2.400e-2875.34Ku domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
W1PH02_AMBTC1.770e-736.62Ku domain-containing protein n=2 Tax=Amborella tri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18244contigL-elsbetiae_contig18244:58..351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog2880.D7FY60
Preferred nameYKU80
KEGG koko:K10885
KEGG Pathwayko03450,map03450
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006333,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007530,GO:0007531,GO:0007533,GO:0007535,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022413,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032505,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0040029,GO:0042162,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043564,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097695,GO:0098687,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.double-strand break repair via nonhomologous end joining
EggNOG OGsKOG2326@1,KOG2326@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Exons1
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.1139205-CDS-L-elsbetiae_contig18244:57..3511622815761.1139205-CDS-L-elsbetiae_contig18244:57..351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18244 58..351 +
1691683085.2983592-CDS-L-elsbetiae_contig18244:57..3511691683085.2983592-CDS-L-elsbetiae_contig18244:57..351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18244 58..351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18244.5276.1prot_L-elsbetiae_contig18244.5276.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18244 58..351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18244.5276.1

>prot_L-elsbetiae_contig18244.5276.1 ID=prot_L-elsbetiae_contig18244.5276.1|Name=mRNA_L-elsbetiae_contig18244.5276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
PNPPPPPKKKKKKKDYIPVNTVDEESLKLPEEPPSLRVIGSAPASTVRRH
FYMDDTLVVVPEPGSGQAAGAIASLANALRNLGQVCVCVCVCVCVCA*
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mRNA from alignment at L-elsbetiae_contig18244:58..351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18244.5276.1 ID=mRNA_L-elsbetiae_contig18244.5276.1|Name=mRNA_L-elsbetiae_contig18244.5276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=294bp|location=Sequence derived from alignment at L-elsbetiae_contig18244:58..351+ (Laminarionema elsbetiae ELsaHSoW15)
CCAAACCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAGGACTACAT
CCCGGTAAACACAGTGGACGAGGAGTCCCTCAAGCTGCCGGAAGAGCCCC
CGTCCCTGAGGGTCATAGGCTCCGCGCCGGCGTCGACGGTGCGGCGGCAC
TTCTACATGGACGACACCCTCGTGGTCGTGCCCGAACCGGGGAGCGGTCA
GGCCGCTGGGGCAATCGCCAGCCTCGCGAACGCCCTGCGGAACCTTGGTC
AGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18244:58..351+

>mRNA_L-elsbetiae_contig18244.5276.1 ID=mRNA_L-elsbetiae_contig18244.5276.1|Name=mRNA_L-elsbetiae_contig18244.5276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig18244:58..351+ (Laminarionema elsbetiae ELsaHSoW15)
CCAAACCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAGGACTACAT
CCCGGTAAACACAGTGGACGAGGAGTCCCTCAAGCTGCCGGAAGAGCCCC
CGTCCCTGAGGGTCATAGGCTCCGCGCCGGCGTCGACGGTGCGGCGGCAC
TTCTACATGGACGACACCCTCGTGGTCGTGCCCGAACCGGGGAGCGGTCA
GGCCGCTGGGGCAATCGCCAGCCTCGCGAACGCCCTGCGGAACCTTGGTC
AGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGACCAAAC
CCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAGGACTACATCCCGGT
AAACACAGTGGACGAGGAGTCCCTCAAGCTGCCGGAAGAGCCCCCGTCCC
TGAGGGTCATAGGCTCCGCGCCGGCGTCGACGGTGCGGCGGCACTTCTAC
ATGGACGACACCCTCGTGGTCGTGCCCGAACCGGGGAGCGGTCAGGCCGC
TGGGGCAATCGCCAGCCTCGCGAACGCCCTGCGGAACCTTGGTCAGGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGA
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