mRNA_L-elsbetiae_contig18237.5274.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18237.5274.1
Unique NamemRNA_L-elsbetiae_contig18237.5274.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18237.5274.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.420e-8
Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = -1 
Query:  199 MVDNRSKSCGHPGCKKHPTYGVEGSKTMEFCAQRKKEGMV 318
            MVD  SK CGHPGC K P+YG +GSK  E CAQ   +GMV
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
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BLAST of mRNA_L-elsbetiae_contig18237.5274.1 vs. uniprot
Match: D7G985_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G985_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 9.250e-7
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -1 
Query:  199 MVDNRSKSCGHPGCKKHPTYGVEGSKTMEFCAQRKKEGMV 318
            M+D   K CGH GC K P+YG +GSK  EFCAQ  ++GMV
Sbjct:    1 MIDVVCKRCGHLGCMKRPSYGTDGSKKREFCAQHSQQGMV 40
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BLAST of mRNA_L-elsbetiae_contig18237.5274.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 4.870e-6
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = -1 
Query:  202 MVDNRSKSCGHPGCKKHPTYGVEGSKTMEFCAQRKKEGM 318
            MVD  ++ C HPGC K P++G +GSK  EFCAQ   +GM
Sbjct:    1 MVDVVNRRCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39
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BLAST of mRNA_L-elsbetiae_contig18237.5274.1 vs. uniprot
Match: D8LCI2_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 4.910e-6
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = -1 
Query:  196 CGHPGCKKHPTYGVEGSKTMEFCAQRKKEGMVD 294
            CGHPGC KH +YGV+G+K  EFC +  K GMVD
Sbjct:    6 CGHPGCGKHSSYGVKGTKEREFCGRHAKMGMVD 38
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BLAST of mRNA_L-elsbetiae_contig18237.5274.1 vs. uniprot
Match: A0A6H5JV67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV67_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 9.930e-5
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = -1 
Query:  199 KSCGHPGCKKHPTYGVEGSKTMEFCAQRKKEGMV 300
            +SC   GC K P+YG+EGSK  E+CA+ KK+GMV
Sbjct:   31 RSCQAKGCTKRPSYGMEGSKKQEYCAEHKKDGMV 64
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18237.5274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FUJ6_ECTSI4.420e-862.50EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G985_ECTSI9.250e-757.50EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LMB1_ECTSI4.870e-653.85EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LCI2_ECTSI4.910e-663.64EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2... [more]
A0A6H5JV67_9PHAE9.930e-558.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18237contigL-elsbetiae_contig18237:459..802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size346
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815760.9403384-CDS-L-elsbetiae_contig18237:458..8001622815760.9403384-CDS-L-elsbetiae_contig18237:458..800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18237 459..800 +
1691683085.1814792-CDS-L-elsbetiae_contig18237:458..8001691683085.1814792-CDS-L-elsbetiae_contig18237:458..800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18237 459..800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18237.5274.1prot_L-elsbetiae_contig18237.5274.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18237 459..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18237.5274.1

>prot_L-elsbetiae_contig18237.5274.1 ID=prot_L-elsbetiae_contig18237.5274.1|Name=mRNA_L-elsbetiae_contig18237.5274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
TPGEGPSSLPPGTGLADLRLYVHLTTSTMHGCSPSPPSCVERRTPSSSCC
LLVATRVAATPALLVVHHPLLLALGAELHRLATLDAVGRVLLATRVAATL
APVVHHPLLLVLGE
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mRNA from alignment at L-elsbetiae_contig18237:459..802+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18237.5274.1 ID=mRNA_L-elsbetiae_contig18237.5274.1|Name=mRNA_L-elsbetiae_contig18237.5274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=344bp|location=Sequence derived from alignment at L-elsbetiae_contig18237:459..802+ (Laminarionema elsbetiae ELsaHSoW15)
ACTCCTGGAGAAGGGCCTTCTTCTTTGCCTCCAGGGACAGGGCTAGCAGA
TCTTCGGCTTTATGTTCATCTGACAACTTCAACCATGCACGGATGTTCAC
CATCCCCTCCTTCTTGTGTTGAGCGCAGAACTCCCTCGTCTTCTTGCTGC
CTCCTTGTTGCAACCAGGGTGGCCGCAACTCCTGCCCTTCTTGTTGTCCA
CCATCCCCTCCTTCTTGCGTTGGGCGCAGAACTCCATCGTCTTGCTACCC
TCGACGCCGTAGGTCGGGTGCTTCTTGCAACCAGGGTGGCCGCAACTCTT
GCTCCTGTTGTCCACCATCCCCTCCTCCTTGTGTTGGGCGAGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18237:459..802+

>mRNA_L-elsbetiae_contig18237.5274.1 ID=mRNA_L-elsbetiae_contig18237.5274.1|Name=mRNA_L-elsbetiae_contig18237.5274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig18237:459..802+ (Laminarionema elsbetiae ELsaHSoW15)
ACTCCTGGAGAAGGGCCTTCTTCTTTGCCTCCAGGGACAGGGCTAGCAGA
TCTTCGGCTTTATGTTCATCTGACAACTTCAACCATGCACGGATGTTCAC
CATCCCCTCCTTCTTGTGTTGAGCGCAGAACTCCCTCGTCTTCTTGCTGC
CTCCTTGTTGCAACCAGGGTGGCCGCAACTCCTGCCCTTCTTGTTGTCCA
CCATCCCCTCCTTCTTGCGTTGGGCGCAGAACTCCATCGTCTTGCTACCC
TCGACGCCGTAGGTCGGGTGCTTCTTGCAACCAGGGTGGCCGCAACTCTT
GCTCCTGTTGTCCACCATCCCCTCCTCCTTGTGTTGGGCGAGACTCCTGG
AGAAGGGCCTTCTTCTTTGCCTCCAGGGACAGGGCTAGCAGATCTTCGGC
TTTATGTTCATCTGACAACTTCAACCATGCACGGATGTTCACCATCCCCT
CCTTCTTGTGTTGAGCGCAGAACTCCCTCGTCTTCTTGCTGCCTCCTTGT
TGCAACCAGGGTGGCCGCAACTCCTGCCCTTCTTGTTGTCCACCATCCCC
TCCTTCTTGCGTTGGGCGCAGAACTCCATCGTCTTGCTACCCTCGACGCC
GTAGGTCGGGTGCTTCTTGCAACCAGGGTGGCCGCAACTCTTGCTCCTGT
TGTCCACCATCCCCTCCTCCTTGTGTTGGGCGAG
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