mRNA_L-elsbetiae_contig1823.5269.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1823.5269.1
Unique NamemRNA_L-elsbetiae_contig1823.5269.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1823.5269.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 327 bits (838), Expect = 3.230e-106
Identity = 153/174 (87.93%), Postives = 160/174 (91.95%), Query Frame = 1
Query:    1 RGSGGGGRPVRFRELTPHEMQQTPEGKFRVSVWRKNKQDAEPVQVSVGVYDSAYEGQRAAEAFSPPLWQEPAKNSRCAVCDSTFGYVLKRRHHCRNCGRLVCSSCAETFWPRNMLPPTYTVDTGEKKVRVCSTCYGAGEDFRKSLLSGSEEGAMAAFSTGCVNLRVPYTIYHNE 522
            R S  G R  RFRELTPHEM QTPEGKF VSVWRKNKQDAEPV+VSVGVYD+AYEGQRAAE+FSPPLWQEP K+SRCAVCDSTFGYVLKRRHHCRNCGRLVCS+CAE FWPR+MLPPTY VDT EKKVRVCSTCY AGEDFRK+ LSGSEEGAMAAFSTGCVNLRVPYTIYHNE
Sbjct:  306 RASVAGARRGRFRELTPHEMHQTPEGKFSVSVWRKNKQDAEPVEVSVGVYDTAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYVAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNE 479          
BLAST of mRNA_L-elsbetiae_contig1823.5269.1 vs. uniprot
Match: D8LDM9_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM9_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 3.480e-104
Identity = 140/155 (90.32%), Postives = 148/155 (95.48%), Query Frame = 1
Query:   58 MQQTPEGKFRVSVWRKNKQDAEPVQVSVGVYDSAYEGQRAAEAFSPPLWQEPAKNSRCAVCDSTFGYVLKRRHHCRNCGRLVCSSCAETFWPRNMLPPTYTVDTGEKKVRVCSTCYGAGEDFRKSLLSGSEEGAMAAFSTGCVNLRVPYTIYHNE 522
            M QTPEGKF VSVWRKNKQDAEPV+VSVGVYD+AYEGQRAAE+FSPPLWQEP K+SRCAVCDSTFGYVLKRRHHCRNCGRLVCS+CAE FWPR+MLPPTY VDT EKKVRVCS+CYGAGEDFRK+ LSGSEEGAMAAFSTGCVNLRVPYTIYHNE
Sbjct:    1 MHQTPEGKFSVSVWRKNKQDAEPVEVSVGVYDTAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSSCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNE 155          
BLAST of mRNA_L-elsbetiae_contig1823.5269.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 9.770e-51
Identity = 86/160 (53.75%), Postives = 113/160 (70.62%), Query Frame = 1
Query:   37 RELTPHEMQQTPEGK--FRVSVWRKNKQDAEPVQVSVGVYDSAYEGQRAAEAFSPPLWQEPAKNSRCAVCDSTFGYVL-KRRHHCRNCGRLVCSSCAETFWPRNMLPPTYTVDTGEKKVRVCSTCYGAGEDFRKSLLSGSEEGAMAAFSTGCVNLRVPYT 507
            RELTPH +++   G   F ++V++ NKQD  P  +  G + ++YE  RAAEAFS P+W EP  NS CA C S F  VL +RRHHCRNCGRLVC++CA  FWP++MLP +Y   + E++VRVC TCY  G+ FR++LL GS +GAM A  TGCVNLR P++
Sbjct:  455 RELTPHLVEELDGGGGGFTLTVFKYNKQDQVPTPLVCGKFATSYEADRAAEAFSSPVWHEPTPNSTCAECQSVFRPVLQRRRHHCRNCGRLVCTTCALRFWPKHMLPHSYRTSSTERRVRVCRTCYSVGKAFRRALLRGSYQGAMEAHGTGCVNLRAPFS 614          
BLAST of mRNA_L-elsbetiae_contig1823.5269.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 2.290e-50
Identity = 84/160 (52.50%), Postives = 113/160 (70.62%), Query Frame = 1
Query:   37 RELTPHEMQQTPEGK--FRVSVWRKNKQDAEPVQVSVGVYDSAYEGQRAAEAFSPPLWQEPAKNSRCAVCDSTFGYVLKRR-HHCRNCGRLVCSSCAETFWPRNMLPPTYTVDTGEKKVRVCSTCYGAGEDFRKSLLSGSEEGAMAAFSTGCVNLRVPYT 507
            RELTPH +++   G   F ++V++ NKQD  P  +  G + ++YE  RAAE FS P+W EP  NS CA C S+F  V +RR HHCRNCGRLVC++CA  FWP++MLP +Y   + E++VRVC TCY  G+ FR++LL GS +GAM A+ TGCVNLR P++
Sbjct:  525 RELTPHLVEELDGGGGGFTLTVFKYNKQDQVPTPLVCGKFATSYEADRAAETFSSPVWHEPTPNSTCAECQSSFRPVFQRRKHHCRNCGRLVCTTCAWRFWPKHMLPHSYRTSSTERRVRVCRTCYSVGKSFRRALLRGSYQGAMEAYGTGCVNLRAPFS 684          
BLAST of mRNA_L-elsbetiae_contig1823.5269.1 vs. uniprot
Match: A0A7S3YF48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF48_HETAK)

HSP 1 Score: 139 bits (350), Expect = 1.610e-36
Identity = 66/128 (51.56%), Postives = 78/128 (60.94%), Query Frame = 1
Query:  139 VGVYDSAYEGQRAAEAFSPPLWQEPAKNSRCAVCDSTFGYVLKRRHHCRNCGRLVCSSCAETFWPRNMLPPTYTVDTGEKKVRVCSTCYGAGEDFRKSLLSGSEEGAMAAFSTGCVNLRVPYTIYHNE 522
            VGVYDS  E   AAEA+SPPLW++      C  C + F  +L+   HCRNCGR+VC  CA   WP  MLP TY    GEKK RVC  C  A EDFR +L  G   G  AA++TG VNLR PYT++  E
Sbjct:   52 VGVYDSRDEAVAAAEAYSPPLWEQKRGGLGCGNCGAKFA-LLRPEKHCRNCGRVVCRECARAHWPPRMLPATYLDGAGEKKARVCRGCQWAMEDFRAALRRGDAPGVRAAYATGVVNLRTPYTVHGGE 178          
BLAST of mRNA_L-elsbetiae_contig1823.5269.1 vs. uniprot
Match: A0A6H5KTY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY3_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.450e-23
Identity = 52/113 (46.02%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  226 RCAVCDSTFGYVLK--------------RRHHCRNCGRLVCSSCAETFWPRNMLPPTYTVDTGEKKVRVCSTCYGAGEDFRKSLLSGSEEGAMAAFSTGCVNLRVPYTIYHNE 522
            RCA+C ST   V+                  +CRNC R+VC  C  TFW RNM+PP Y  +    ++RVC TC  A E FR +LL G  E AM+A+STGCVNL  PYT++H E
Sbjct:  494 RCALCMSTNVSVVHPPGGNNRGNRXXXXXNKNCRNCWRVVCDDCVGTFWARNMVPPRYASERDGFRMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGE 606          
BLAST of mRNA_L-elsbetiae_contig1823.5269.1 vs. uniprot
Match: D7FYF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.580e-23
Identity = 52/113 (46.02%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  226 RCAVCDSTF--------------GYVLKRRHHCRNCGRLVCSSCAETFWPRNMLPPTYTVDTGEKKVRVCSTCYGAGEDFRKSLLSGSEEGAMAAFSTGCVNLRVPYTIYHNE 522
            RCA+C ST               G       +CRNC R+VC  C  TFW RNM+PP Y  +    ++RVC TC  A E FR +LL G  E AM+A+STGCVNL  PYT++H E
Sbjct:  492 RCALCMSTNVSAVHPPGGNTRRNGNSSSSDKNCRNCWRVVCDDCIGTFWARNMVPPRYASEGDGFRMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGE 604          
BLAST of mRNA_L-elsbetiae_contig1823.5269.1 vs. uniprot
Match: A0A0M0K3E4_9EUKA (Hepatocyte growth factor-regulated tyrosine kinase substrate n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3E4_9EUKA)

HSP 1 Score: 92.4 bits (228), Expect = 1.110e-18
Identity = 63/174 (36.21%), Postives = 82/174 (47.13%), Query Frame = 1
Query:   16 GGRPVRFRELTPHEMQQTP-------EGKFRVSVWRKNKQDAEPVQVSV-GVYDSAYEGQRAAEAFSPPLWQEPAKNSRCAVCDSTFGYVLKRRHHCRNCGRLVCSSCAETFWPRNMLPPTYTVDTG-----EKKVRVCSTCYGAGEDFRKSLLSGSEEGAMAAFSTGC-VNLR 495
            G RP   RE  P   ++ P        G++   V       A     SV G + S  E   +A   +PP+W +    S C  C   FG V +RRHHCRNCG  +C +C    WP   +P  +TV  G     EK VRVC +C GA + FR  +L+G   GAM   + G  VNLR
Sbjct:  173 GARPSGEREYAPRARRRIPTVVGRNGRGQWEAVVAAVTSPPARARPASVLGPFGSEGEAHASARHDAPPVWDD---GSACTRCGQGFGLV-RRRHHCRNCGHAMCDACC-LKWPMRSMPALFTVGDGGIAIGEKHVRVCYSCDGAAQAFRIYMLAGDYGGAMNMLNLGANVNLR 341          
BLAST of mRNA_L-elsbetiae_contig1823.5269.1 vs. uniprot
Match: A0A448ZK47_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZK47_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.800e-18
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 1
Query:  163 EGQRAAEAFSPPLWQEPAKNSRCAVCDSTFGYVLKRRHHCRNCGRLVCSSCAETFWPRNMLPPTYTVDTGEKKVRVCSTCYGAGEDFRKSLLSGSEEGAMAAFSTGCVNLRVPYTIYHNE 522
            E + +A A +PP   +   NS C VC   F  + +R  HCRNCG  +C+SC+ T WP   +P TY +   E +V++C +C      F+++LL G  E A+A + TG +NLR P+  + ++
Sbjct:  450 EARESAIANAPPKMMKFDDNSNCFVCQGKFA-MFRRASHCRNCGVCICNSCSTT-WPSKAIPETYNLKK-ESQVKICKSCNFLSGAFKRALLEGDYEEAVALYGTGNINLRTPFPQFSSK 566          
BLAST of mRNA_L-elsbetiae_contig1823.5269.1 vs. uniprot
Match: A0A7S1CPH2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPH2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.910e-18
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 1
Query:  229 CAVCDSTFGYVLKRRHHCRNCGRLVCSSCAETFWPRNMLPPTYTVDTGEKKVRVCSTCYGAGEDFRKSLLSGSEEGAMAAFSTGCV-NLRVPYTIY 513
            C +C  TFG + + +HHCRNCG LVCS C+   WP+ ML   + +   EK +R+CS C  + E FR++L+ G+   A+  F  G + +L  P+ I+
Sbjct:  131 CKICKGTFGLIGRHKHHCRNCGALVCSKCSPARWPKKMLSAGFNLKN-EKMLRICSVCQMSLESFREALMEGNLTAALRVFRRGYIRDLSTPHLIF 225          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1823.5269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTC5_9PHAE3.230e-10687.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDM9_ECTSI3.480e-10490.32FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FYF4_ECTSI9.770e-5153.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUU5_9PHAE2.290e-5052.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YF48_HETAK1.610e-3651.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5KTY3_9PHAE1.450e-2346.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF5_ECTSI3.580e-2346.02FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A0M0K3E4_9EUKA1.110e-1836.21Hepatocyte growth factor-regulated tyrosine kinase... [more]
A0A448ZK47_9STRA1.800e-1836.67Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S1CPH2_9STRA5.910e-1839.58Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1823contigL-elsbetiae_contig1823:2146..7139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.1
Seed ortholog evalue2.5e-81
Seed eggNOG ortholog2880.D8LDM9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size523
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1823.5269.1prot_L-elsbetiae_contig1823.5269.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1823 2146..7139 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815760.717921-CDS-L-elsbetiae_contig1823:2145..22991622815760.717921-CDS-L-elsbetiae_contig1823:2145..2299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1823 2146..2299 -
1691683085.0488064-CDS-L-elsbetiae_contig1823:2145..22991691683085.0488064-CDS-L-elsbetiae_contig1823:2145..2299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1823 2146..2299 -
1622815760.7310243-CDS-L-elsbetiae_contig1823:3163..33041622815760.7310243-CDS-L-elsbetiae_contig1823:3163..3304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1823 3164..3304 -
1691683085.0625658-CDS-L-elsbetiae_contig1823:3163..33041691683085.0625658-CDS-L-elsbetiae_contig1823:3163..3304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1823 3164..3304 -
1622815760.741951-CDS-L-elsbetiae_contig1823:4608..47211622815760.741951-CDS-L-elsbetiae_contig1823:4608..4721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1823 4609..4721 -
1691683085.071336-CDS-L-elsbetiae_contig1823:4608..47211691683085.071336-CDS-L-elsbetiae_contig1823:4608..4721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1823 4609..4721 -
1622815760.7517455-CDS-L-elsbetiae_contig1823:7025..71391622815760.7517455-CDS-L-elsbetiae_contig1823:7025..7139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1823 7026..7139 -
1691683085.0797284-CDS-L-elsbetiae_contig1823:7025..71391691683085.0797284-CDS-L-elsbetiae_contig1823:7025..7139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1823 7026..7139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1823.5269.1

>prot_L-elsbetiae_contig1823.5269.1 ID=prot_L-elsbetiae_contig1823.5269.1|Name=mRNA_L-elsbetiae_contig1823.5269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
RGSGGGGRPVRFRELTPHEMQQTPEGKFRVSVWRKNKQDAEPVQVSVGVY
DSAYEGQRAAEAFSPPLWQEPAKNSRCAVCDSTFGYVLKRRHHCRNCGRL
VCSSCAETFWPRNMLPPTYTVDTGEKKVRVCSTCYGAGEDFRKSLLSGSE
EGAMAAFSTGCVNLRVPYTIYHNE
back to top

mRNA from alignment at L-elsbetiae_contig1823:2146..7139-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1823.5269.1 ID=mRNA_L-elsbetiae_contig1823.5269.1|Name=mRNA_L-elsbetiae_contig1823.5269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4994bp|location=Sequence derived from alignment at L-elsbetiae_contig1823:2146..7139- (Laminarionema elsbetiae ELsaHSoW15)
CGGGGGTCCGGGGGGGGTGGGAGGCCGGTGAGGTTCCGGGAGCTCACCCC GCACGAGATGCAGCAGACGCCGGAAGGGAAGTTCCGCGTCTCCGTGTGGA GGAAGAACAAGCAGGTGTGTGTCTGTGTCTATTTGTCTGTCTGTCTGTCT GTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTGTCTCTCTCTGTGTGT GTATGTCTATATGTCTGTCTGTGTGTGTGTGCGTGTTGTGCGTGTGCTGT TTTTGTTGTGCAGTCAGCGCTGGCTGGTCTAAGGGTTTGATTTCGGCCTC TAAAGCCGACCTCACCGTCGACGAGGGAAAGGGGACGGCTGAACCCTTCT CGCGACAAAAATGTTAGGCAAGCGCCGCAGAAAGGGGGAGTGGGGGGCTG GGGAAAAAGGAACCCTTCTGTGTGACCACGGTTCAGTACTCTGGCAAGAT GCCCTCGTGGCAAGGAGCCCATCGAGCATTGGAAATAAATGCCAAAAAGA AAAAAAAACAGGCGTCCGGAGGCGGAGAAAGCGAGAGAGGGTGGGGGTGT AACCGGGCGCGAAAAGCGAAACATTGGCGATGTGAGAGGAGAAAATTGAA ACGGGGGAGGAGGGGGGGGGGGGGGGGCACATGTGGCATGCATTTTTTTA TGGATGGGGGTGTGTGCCGGTGGTTGGTTTGGTTTCAGGTTTCGATAAAA TAAAAGAGGCTTTCTTGTTTTGGGTGTATTTCTAGGTGCGTTTGGCGTGT ATTTAGCTTCGTGCTGTTCGTGGTGCACACCTCTAAAAGCCAGAAGCGAA TGATGGGGACGGTGGTGGACTTGTGGGCTTGTGGACTTGCTCAACACCAT TTGTTTTTGTTTTTGTTAGGCAAGAGGAGAGGCACAAGAGTGCCGGACTA GAGCGAGGCGTCGAAGACTCTTCGCTCTTGTCTCCGCAAGTTGTTGTCTG GAAGATTCGAGTTTCCATCTTGTATCTGGTCGATCCAACGGGTCGAAATG ATACTCCGATAAAGATACGATCTTCCTATACTTGTTGGTATGTGTACTTC TCGTTACCATCTCTTACACCTGTCATCCACATTTTCCTCCTATTATTAGC ATATTTTCGTCGTCTGCTCCACTGGCCCCCATACTCCACTACGACTAGCT AGACGACCCAACCGGAGGGGGGGTTGGACCCCCTCCTGCGGTGCCTGCCT GTTATGTTTTCATCGATGTAAGCCTCGAACTCGACTTGTCATCTCGGACA ACAATAAATAGGCTGAGGCTCGCTCCCCTTTTCCGCTTTACCTCGAAGTG TCTTGACTGTTGTTGTTGTTGTTGTTGTTGTTGATGTATTCGCATGAAAC CCCCGATATCTCTATCTAGTACATTCATCTGTCCGTGCTGTTCCCACGCC GATCCCCGTGGCTGCAGACTGCATAAAACTTAACCAACCCCAAAGAGGAT AGAAGTATAAACACTGAAAAAATGAAAATTGGGTGCCTCCAAAACTGTTG TCCCGCGACGGGTTTGGGCGGCTCATCTGGAGTCCGAGACCGCACGACGG GCGTGGTACCGAGAGAGACGGCGGGAAGACCGCGTTGCTTCTTTTGCTTC GTCTTCGCTACTTCGTACCTCGCATGCATATAGATATAGGGTACATCTTA TTTTGGTGTCTGAGGTACCACGGCATCAGGAGGCGACCCCCGCGATCCTC GACTTTTTTCGGTCTTACGTACGTACGCATGCTCATCGGTTCCCTGGATG TTGGTTCTACGGGTATGCAGGTAGTCAATCTACCACATGTACGACACCTA CTATTTCCTCTGTGTGCACATCGCCTTGAATGCCTCGCGGTGGCACATGG AGCAACTCCTCTATCCTGTCCTCGGCATTTTTATTTTCGTATTTAGTGCC TGAACGTCAGCCGTCTCCATAAAACCTGTGAACTCCCCGCCCCCGGGCTA CTGCTGTATAGTGGTATGAAATCGACAATCCGTACTTATGGTTTCTCGGG TCTTGATGGGTGTTTGTTTTATTCGGGGGGTGTTGTTATAACCTGCCGGG GCACAGGTCTGTACGTGCGTCGAAGCAGGCAAGTCTCGCACACACAATTT CCGACGCAATAAGATCCCCCACTGGCTTAGATAGATAAAAGGCGCCCGCA GTATTCTGATTGGTCAATTATTTTGGCAGGGACAGTTCCGCAGAAAGGCG AAAAATCCACGGTCGGCTGGTGACGTCATCCACGGTTGTGTCGTCACTTC TCGGGGAAACTCGAAAAATTCAAGTTCGCCGAGATTGGCTGATCGATGGC ATCAATCGTTCGCCGGAACCGCCGACCACACGTAGTACTACATTCATTCG CGCCAGACAGTCAGTAGTTACGAAACACGCAACAAACAAACAACCGAAAC GCAACAACCTGTCCGCAGGATGCCGAACCGGTTCAAGTGTCGGTGGGGGT GTACGACTCTGCCTACGAGGGCCAGAGGGCGGCGGAAGCGTTTTCGCCCC CGCTCTGGCAGGAGCCCGCCAAGAACTCGAGGTGAGCGAGGCCTGTAGTC CGCCGCCACCGCCGCCGCGGGTACTACTGTAGCCCCGAGTCGACCATTCA GTCAAAGTTTTACAGCAGTAGTCACAGCGGTTACCGCCTTGTTGGGTTTG GATAGGAGTGAAGGGGACAGGACACAGCTCGGGCGGGGGGGGCGGTGCGG TGGGGGTAGGATATAGGCGTATGGCTTTTTCGACCCTTGGTTGTTGCTGG GTGCATGCCGGGGGGCTACAACAATCAGTAGCAGTAGTTGTTATTTCTCG CTTTTTGTTTTTTGCACCTATGTAACCCTTTCGAGACAAGCAAGGACCGC GGGAGCACTTTTTTTGGGGGGGGGGTGGGCGTTCACGAAGGGTGTGTTAG TTTTGGCGGCGGCGGAGTCGCTCGCTTACCTCCACACGCGCGCGCGCGCC CCGCGTTTCGATGAGATCGCGCCGAAGGCTGACGGAGACCAGCCCGGCGA CGAGGACAAGGTTCTTGCGTGTGTGTGTGTGTTTGTTTGTGTTGGTGTGT GTGTGTGTGTGTTGGTGTTGGTGTGTGTGCGTGTGTGAGTGTGTGTGTGT GTGTGTGTGTTTTTTTTGTTTTTGTGTTCGTGTGTGAGTGTGTGTTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATTCTCATGTGTTGTCG TCCCGTTTGTTCGGGCGCCTGTCTACCTTTCTCGGTGTGTGTGTGCCGTA CGGGTTCGGGGCGGTATAATACTATACGTTTCGGTGTAGCATATATCATA TATTCTCTGTGTAGCTAAAAAGACGGAGCGGCCGGGGTCAGGGGGGGTAA ATAAACACTGACTGCAGCTTCTTGCTTCTAGGTTGATGTTGCGTGCTTGG GAGAAACACACCCAACTATTTCGTGGAGCTTTTCTCGGCGGCCCTTTAGG AAAGACAGGCGTCGTGGTGGTTTACCGCTCACTGTCTGTGTTTTGCCTGC TGTTGAGGGGGCCCCGTCGTGGCTCCGAGTCGCCTTAGCTCGGCCGGTTG ACGCGATAATGAAAGGAGGCGTTTTTGTCTGCCGTTTCGTAAGAAAAAAC ATCGTTACACGTGATTCATAGATATTTACGCAGGAGTATGTACATCTACA TATCAACTTCGAAGTATGCGAATATGTCCATACATACATATGAAGCGAGT ATTTTTACTATTTTATAGTATTTCATGCTGTTTTATGTGTGTCAACAGCA GTTCTCCTGATTTTTCAGTTTTTTTTTTTCTGACTCTTGCTCGTGCTCTC TCACCGCTCCCTCCACTGCTCGGCTCGTTGCCCAGGTGTGCCGTGTGCGA CTCCACCTTCGGGTACGTGCTCAAGAGGCGTCACCATTGCCGTAATTGCG GCCGTCTGGTGTGCTCTTCCTGCGCGGAGACGTTCTGGCCGAGGAACATG CTGCCGCCGACCTACACCGTTGATACGTGAGCGTCGTCGTGGTTATTGTT GATGTTGCTGTTGTTGTTGTTGGCGGTGTCGTTGTTGTTGGCGGTGTCGT TGTTGGTGCTGTCTTTACGCTTAAAAACCGTTCCAATCTTCTCTACCCAG TACCTGTACTATTCCAGCACTGGATGGGGTCGACTCCCGTGGCCACAGGC AGGCCACATCACTCACCCTAAAAAGGGTATGCTGAGCGTGCTTTATTAGA GAGAAAACATATATATATGTATGCCATTGCTGTAGTCGGGGGGAGGGAGG GCAGCGAGGGAGGGGGGGGGGAGGGGTAATGTGGCTTCAACAGCAGTGCC CCATTGCAGGGACGCTTCCTTGCTGGCTGGATGTAGATAGACAGACGGCT GACGCGTGCAGTGGACAAATTGTTTTAAAAGTTCGAAGAGGCTGGACGAT TTATCAAGTGTCAGTCGGCGCTTGCGGGTGAAAGCTGGTTAGTTGTGTTC GTGTGTGTGTCCTGCATCGGGAGGTGTCTCGAGAATCAAACAGCCTGGGA CAACGAAGGGTCTAGGGGGGACCGCCGAGGGCGCAGAAGCACCGTGTACG CTTGAAGCAACCCGTCCGAATAGCAAAAGCTCTTGCGCCCTCTCTCTCTG TCTCTCTGTCTCTCTGCCTCTGTCTCTGTCTCTCCCTCCTGCTCTGTCGC CACCAACTCCTTGAAAATGAATCCGGAAAATAAGGAGAGAACCCCCCCCA TACACACACACATAAGAGACGGGACCCCGTAGTGAATATCAACAGCAGCT CCATATTAAAAGCAGGCGGTGACTCTTGTTCCTCTTTGCTAACGTTCTTC GTGTCGATACGAAACGAAACGGAAACTGATCGCACCGCAGCGGAGAGAAG AAGGTGCGGGTGTGTTCGACGTGCTACGGCGCCGGGGAAGACTTCAGAAA ATCCCTGTTGTCCGGGTCCGAGGAGGGGGCGATGGCGGCGTTCAGCACCG GCTGCGTCAACCTGCGCGTGCCCTACACGATCTACCACAACGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1823:2146..7139-

>mRNA_L-elsbetiae_contig1823.5269.1 ID=mRNA_L-elsbetiae_contig1823.5269.1|Name=mRNA_L-elsbetiae_contig1823.5269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig1823:2146..7139- (Laminarionema elsbetiae ELsaHSoW15)
CGGGGGTCCGGGGGGGGTGGGAGGCCGGTGAGGTTCCGGGAGCTCACCCC
GCACGAGATGCAGCAGACGCCGGAAGGGAAGTTCCGCGTCTCCGTGTGGA
GGAAGAACAAGCAGCGGGGGTCCGGGGGGGGTGGGAGGCCGGTGAGGTTC
CGGGAGCTCACCCCGCACGAGATGCAGCAGACGCCGGAAGGGAAGTTCCG
CGTCTCCGTGTGGAGGAAGAACAAGCAGGATGCCGAACCGGTTCAAGTGT
CGGTGGGGGTGTACGACTCTGCCTACGAGGGCCAGAGGGCGGCGGAAGCG
TTTTCGCCCCCGCTCTGGCAGGAGCCCGCCAAGAACTCGAGGATGCCGAA
CCGGTTCAAGTGTCGGTGGGGGTGTACGACTCTGCCTACGAGGGCCAGAG
GGCGGCGGAAGCGTTTTCGCCCCCGCTCTGGCAGGAGCCCGCCAAGAACT
CGAGGTGTGCCGTGTGCGACTCCACCTTCGGGTACGTGCTCAAGAGGCGT
CACCATTGCCGTAATTGCGGCCGTCTGGTGTGCTCTTCCTGCGCGGAGAC
GTTCTGGCCGAGGAACATGCTGCCGCCGACCTACACCGTTGATACGTGTG
CCGTGTGCGACTCCACCTTCGGGTACGTGCTCAAGAGGCGTCACCATTGC
CGTAATTGCGGCCGTCTGGTGTGCTCTTCCTGCGCGGAGACGTTCTGGCC
GAGGAACATGCTGCCGCCGACCTACACCGTTGATACCGGAGAGAAGAAGG
TGCGGGTGTGTTCGACGTGCTACGGCGCCGGGGAAGACTTCAGAAAATCC
CTGTTGTCCGGGTCCGAGGAGGGGGCGATGGCGGCGTTCAGCACCGGCTG
CGTCAACCTGCGCGTGCCCTACACGATCTACCACAACGAGCGGAGAGAAG
AAGGTGCGGGTGTGTTCGACGTGCTACGGCGCCGGGGAAGACTTCAGAAA
ATCCCTGTTGTCCGGGTCCGAGGAGGGGGCGATGGCGGCGTTCAGCACCG
GCTGCGTCAACCTGCGCGTGCCCTACACGATCTACCACAACGAG
back to top