mRNA_L-elsbetiae_contig18215.5262.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18215.5262.1
Unique NamemRNA_L-elsbetiae_contig18215.5262.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18215.5262.1 vs. uniprot
Match: A0A6H5L0W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W4_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.130e-36
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETSNASKK 189
            ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELET+NASKK
Sbjct:   37 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETTNASKK 99
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BLAST of mRNA_L-elsbetiae_contig18215.5262.1 vs. uniprot
Match: D7FHD2_ECTSI (PRP1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD2_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 2.290e-33
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETSNASKK 189
            ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELET+NASKK
Sbjct:  200 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETTNASKK 262
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BLAST of mRNA_L-elsbetiae_contig18215.5262.1 vs. uniprot
Match: A0A835YM25_9STRA (PRP1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM25_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 6.240e-21
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETSNASKK 189
            ARK IK GCE CPDNEDVWLE ARLQTP+NAKTVLANA+R+LP SVKI     +LET    K+
Sbjct:  189 ARKVIKQGCETCPDNEDVWLEAARLQTPDNAKTVLANAVRHLPGSVKIXXXXXDLETDATKKR 251
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BLAST of mRNA_L-elsbetiae_contig18215.5262.1 vs. uniprot
Match: A0A7S3LP65_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LP65_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.170e-20
Identity = 41/63 (65.08%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETSNASKK 189
            AR  I+ GCEACP++EDVWLE ARLQT ++AK VLANA+R++P SVK+WL AA+LE+SN + K
Sbjct:  184 ARVLIQKGCEACPESEDVWLEAARLQTAQHAKAVLANAVRHIPRSVKLWLHAADLESSNPTNK 246
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BLAST of mRNA_L-elsbetiae_contig18215.5262.1 vs. uniprot
Match: R1E6U8_EMIHU (PRP1_N domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E6U8_EMIHU)

HSP 1 Score: 90.5 bits (223), Expect = 1.030e-19
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETS 174
            AR+ I+ GC AC  NEDVWLE ARLQTPENAK VLA+AI+ +PTSVKIWL+AA LE++
Sbjct:  305 ARQIIREGCRACAANEDVWLEAARLQTPENAKVVLADAIKKIPTSVKIWLQAASLESN 362
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BLAST of mRNA_L-elsbetiae_contig18215.5262.1 vs. uniprot
Match: A0A8H7SJU0_9FUNG (PRP1_N domain-containing protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7SJU0_9FUNG)

HSP 1 Score: 90.1 bits (222), Expect = 1.400e-19
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETSNASKK 189
            AR TI  GCE CP NEDVWLE ARL T +NAK +L +A+R+LP SVKIWL+A  +ET N +KK
Sbjct:  298 ARNTIAKGCEQCPKNEDVWLEAARLNTVDNAKIILGDAVRHLPQSVKIWLKAVSMETDNKAKK 360
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BLAST of mRNA_L-elsbetiae_contig18215.5262.1 vs. uniprot
Match: A0A4P9YZQ8_9FUNG (PRP1 splicing factor, N-terminal-domain-containing protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YZQ8_9FUNG)

HSP 1 Score: 89.0 bits (219), Expect = 3.560e-19
Identity = 41/63 (65.08%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETSNASKK 189
            AR  I  GCEACP +EDVWLE ARL + ENAK +LANA+R +P SVKIWL A  LET  A+KK
Sbjct:  297 ARNIITQGCEACPKSEDVWLEAARLNSNENAKIILANAVREIPQSVKIWLHALHLETETAAKK 359
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BLAST of mRNA_L-elsbetiae_contig18215.5262.1 vs. uniprot
Match: A0A8H7ERX6_9FUNG (PRP1_N domain-containing protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7ERX6_9FUNG)

HSP 1 Score: 89.0 bits (219), Expect = 3.590e-19
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETSNASKK 189
            AR  I  GCE CP NEDVWLE ARL T +NAK +LANA+R+LP SVKIWL+A +LET   ++K
Sbjct:  298 ARSIIAKGCEQCPKNEDVWLESARLNTVDNAKIILANAVRHLPQSVKIWLKAVDLETDQKAQK 360
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BLAST of mRNA_L-elsbetiae_contig18215.5262.1 vs. uniprot
Match: A0A0B7N0S3_9FUNG (PRP1_N domain-containing protein n=6 Tax=Mucoraceae TaxID=34489 RepID=A0A0B7N0S3_9FUNG)

HSP 1 Score: 88.6 bits (218), Expect = 4.900e-19
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETSNASKK 189
            AR TI  GCE CP NED+WLE ARL   +NAK +L +A+R+LP SVKIWL+A  LET N +KK
Sbjct:  300 ARNTIAKGCEQCPKNEDIWLEAARLNNVDNAKIILGDAVRHLPQSVKIWLKAVSLETDNKAKK 362
[Close]
BLAST of mRNA_L-elsbetiae_contig18215.5262.1 vs. uniprot
Match: A0A163J8L8_ABSGL (PRP1_N domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163J8L8_ABSGL)

HSP 1 Score: 88.6 bits (218), Expect = 4.920e-19
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETSNASKK 189
            AR TI  GC  CP NEDVWLE ARL T +NAK +LA+A+R++P SVKIWLRA  LET + +KK
Sbjct:  284 ARNTIAKGCAQCPKNEDVWLESARLNTVDNAKIILADAVRSIPQSVKIWLRAVNLETDSKNKK 346
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18215.5262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0W4_9PHAE3.130e-3698.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHD2_ECTSI2.290e-3398.41PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YM25_9STRA6.240e-2169.84PRP1_N domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S3LP65_9STRA2.170e-2065.08Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
R1E6U8_EMIHU1.030e-1970.69PRP1_N domain-containing protein n=1 Tax=Emiliania... [more]
A0A8H7SJU0_9FUNG1.400e-1963.49PRP1_N domain-containing protein n=1 Tax=Thamnidiu... [more]
A0A4P9YZQ8_9FUNG3.560e-1965.08PRP1 splicing factor, N-terminal-domain-containing... [more]
A0A8H7ERX6_9FUNG3.590e-1963.49PRP1_N domain-containing protein n=1 Tax=Apophysom... [more]
A0A0B7N0S3_9FUNG4.900e-1961.90PRP1_N domain-containing protein n=6 Tax=Mucoracea... [more]
A0A163J8L8_ABSGL4.920e-1963.49PRP1_N domain-containing protein n=1 Tax=Absidia g... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18215contigL-elsbetiae_contig18215:2694..2882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue4.5e-28
Seed eggNOG ortholog2880.D7FHD2
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGsKOG0495@1,KOG0495@2759
Ec32 ortholog descriptionPre-mRNA-processing factor 6/Prp1/STA1
Ec32 orthologEc-03_003920.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.8449194-CDS-L-elsbetiae_contig18215:2693..28821622815759.8449194-CDS-L-elsbetiae_contig18215:2693..2882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18215 2694..2882 +
1691683084.5140076-CDS-L-elsbetiae_contig18215:2693..28821691683084.5140076-CDS-L-elsbetiae_contig18215:2693..2882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18215 2694..2882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18215.5262.1prot_L-elsbetiae_contig18215.5262.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18215 2694..2882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18215.5262.1

>prot_L-elsbetiae_contig18215.5262.1 ID=prot_L-elsbetiae_contig18215.5262.1|Name=mRNA_L-elsbetiae_contig18215.5262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=63bp
ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWL
RAAELETSNASKK
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mRNA from alignment at L-elsbetiae_contig18215:2694..2882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18215.5262.1 ID=mRNA_L-elsbetiae_contig18215.5262.1|Name=mRNA_L-elsbetiae_contig18215.5262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=189bp|location=Sequence derived from alignment at L-elsbetiae_contig18215:2694..2882+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCGTAAGACGATCAAGGCGGGATGCGAGGCCTGCCCGGACAACGAGGA
CGTCTGGCTGGAGGGTGCGAGGCTCCAGACGCCGGAGAACGCCAAGACCG
TGCTGGCCAACGCGATCAGAAACCTGCCGACAAGCGTCAAGATCTGGCTG
AGGGCGGCCGAGCTCGAGACGAGCAACGCATCCAAGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18215:2694..2882+

>mRNA_L-elsbetiae_contig18215.5262.1 ID=mRNA_L-elsbetiae_contig18215.5262.1|Name=mRNA_L-elsbetiae_contig18215.5262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig18215:2694..2882+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCGTAAGACGATCAAGGCGGGATGCGAGGCCTGCCCGGACAACGAGGA
CGTCTGGCTGGAGGGTGCGAGGCTCCAGACGCCGGAGAACGCCAAGACCG
TGCTGGCCAACGCGATCAGAAACCTGCCGACAAGCGTCAAGATCTGGCTG
AGGGCGGCCGAGCTCGAGACGAGCAACGCATCCAAGAAGGCGCGTAAGAC
GATCAAGGCGGGATGCGAGGCCTGCCCGGACAACGAGGACGTCTGGCTGG
AGGGTGCGAGGCTCCAGACGCCGGAGAACGCCAAGACCGTGCTGGCCAAC
GCGATCAGAAACCTGCCGACAAGCGTCAAGATCTGGCTGAGGGCGGCCGA
GCTCGAGACGAGCAACGCATCCAAGAAG
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