mRNA_L-elsbetiae_contig18194.5251.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18194.5251.1
Unique NamemRNA_L-elsbetiae_contig18194.5251.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18194.5251.1 vs. uniprot
Match: D7FM50_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM50_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.500e-23
Identity = 93/151 (61.59%), Postives = 102/151 (67.55%), Query Frame = 1 
Query:   22 KKAAAAKQKVAKSVGTSKAKRDAALAKKRGLSASXXXXXXXXXXEVQRTKTQQSKKKARKNADALVASTKGVSKXXXXXXXXXXXXXXXXXXXXXSQKGGRKAAGASAKSKRXXXXXXXXXXXXXXXXXXXTAPNVKGTGFSVGVKGAGKK 474
            KKAAAAKQKVAKSVGTSKAKRDAAL+KKRG+SAS          EVQRTKTQQSKKKAR+NAD LVAST+GVSK      XXXXXXXXX           +  A  SA+SKR          XXXXXXXX  A N+K  GF++GVKG  KK
Sbjct:   45 KKAAAAKQKVAKSVGTSKAKRDAALSKKRGISASAKPSPAKIEAEVQRTKTQQSKKKARQNADVLVASTRGVSKAKAKKAXXXXXXXXXASK--------KSTAAGSARSKRGGARPGGKKQXXXXXXXXQAAQNIKSKGFNIGVKGTSKK 187
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18194.5251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM50_ECTSI1.500e-2361.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18194contigL-elsbetiae_contig18194:1454..2920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_010650.1
Exons2
Model size618
Cds size618
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.199611-CDS-L-elsbetiae_contig18194:1453..18941622815758.199611-CDS-L-elsbetiae_contig18194:1453..1894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18194 1454..1894 -
1691683083.4346874-CDS-L-elsbetiae_contig18194:1453..18941691683083.4346874-CDS-L-elsbetiae_contig18194:1453..1894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18194 1454..1894 -
1622815758.2138486-CDS-L-elsbetiae_contig18194:2743..29201622815758.2138486-CDS-L-elsbetiae_contig18194:2743..2920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18194 2744..2920 -
1691683083.444449-CDS-L-elsbetiae_contig18194:2743..29201691683083.444449-CDS-L-elsbetiae_contig18194:2743..2920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18194 2744..2920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18194.5251.1prot_L-elsbetiae_contig18194.5251.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18194 1454..2920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18194.5251.1

>prot_L-elsbetiae_contig18194.5251.1 ID=prot_L-elsbetiae_contig18194.5251.1|Name=mRNA_L-elsbetiae_contig18194.5251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
ASASASGKKAAAAKQKVAKSVGTSKAKRDAALAKKRGLSASAKASPAKID
AEVQRTKTQQSKKKARKNADALVASTKGVSKAKAKKAKAAAAAAAAAAAA
AASQKGGRKAAGASAKSKRGGARPGGKKQGAGPGGPKQTAPNVKGTGFSV
GVKGAGKKQKQQAQQLQQAQQEQLQQAQQEQLQLQQQAGKRGKPWKRQRG
GGEAKA
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mRNA from alignment at L-elsbetiae_contig18194:1454..2920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18194.5251.1 ID=mRNA_L-elsbetiae_contig18194.5251.1|Name=mRNA_L-elsbetiae_contig18194.5251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1467bp|location=Sequence derived from alignment at L-elsbetiae_contig18194:1454..2920- (Laminarionema elsbetiae ELsaHSoW15)
GCGTCGGCGAGTGCCAGCGGCAAGAAGGCCGCGGCGGCCAAGCAGAAGGT
GGCGAAGTCAGTGGGCACCTCCAAAGCCAAACGAGACGCGGCCCTCGCCA
AGAAGCGCGGGCTGTCGGCCAGCGCCAAAGCGTCGCCGGCCAAGATCGAC
GCCGAGGTGCAGCGCACCAAGACGCAGGTGCGTGTGTTCGTGCGTGTGCG
TGTGCGTGTGCGTGTGCGTGTGTGTTTGCGTCCAACGGATGGGAAGACGA
CAGCAGCAGCAGCAGCAGTAGAATTTTTTTTTCCAGCATCAGAAGCTGCT
CCTTTTTTGCACGTAGACAACAGATACTCCACACGTCGCACCGATGCCCG
TCCGTCCGCGCGCGGCTGAATGGATGGGCCTTTTCACTTCTCACCTCGAC
GTTTAACCTAGCCCGTACATCGGGGCCGGTTAGCGGTGTTGTCGGTTTCT
TTTTCCTGTCTTGTTCTGCCAAAAGCCTCTCACACCGACTGACAGGGCTG
GCTCTCTGCACGATCGACCGGCTCTCGAAAAGCAACCTCAGCGCGTGTTG
CGCCCCTATATTTTATGCAAGGAAAACCCCAAGAAAATGTTTATTGAAAC
TTTCATGAGCCTCCCTCCAACCTGAGAGCCTTTGGAGAACAAAAGTATTG
TGTCTTAGCTACTTGTGTACGAGAATGCAGGTGCTGCGCCGGCGGTGGGT
CGAGCCCGGGCCCAGCTCTTACACATTTGCGCTTCCTTAGCACACGCGCG
CGTCACGCGGGCTGGTGTCGGTGCTGCGTTCTTCGGCTACGTATGACTGC
GGTGGAGTGGCTGTAGACATTTAAGATTTCGTAGCGGGTTTGTGTCGGCG
AAGCACCATCTCCTTGATGTGCCACACATGCACACACATACCTACACGCA
AGTGGTGTTCACTCGTCGCGCTGCCCGGGCCTGAAGTCATTCGAGATAAG
AGAGAGAGAGAATTGATCTCTCCCGCCCCCGCCCCCGCCCCCGCCCTGGC
CCCCCTCCCTGCCTTCCTTCCCTCAGCAATCCAAGAAGAAGGCGCGAAAA
AACGCCGACGCGCTGGTCGCCAGCACGAAGGGCGTGAGCAAGGCCAAAGC
CAAGAAGGCCAAGGCGGCGGCGGCAGCGGCAGCGGCAGCGGCGGCGGCAG
CGGCATCCCAAAAGGGCGGGAGGAAAGCGGCGGGCGCGAGCGCCAAGTCC
AAGCGCGGCGGCGCCAGGCCGGGCGGCAAGAAGCAGGGCGCCGGCCCCGG
CGGTCCCAAGCAGACCGCGCCGAACGTCAAGGGGACGGGCTTCAGCGTAG
GGGTCAAGGGCGCCGGCAAAAAACAGAAGCAGCAGGCGCAGCAGCTGCAG
CAGGCGCAGCAGGAGCAGCTGCAGCAGGCGCAGCAGGAGCAGCTGCAGCT
GCAGCAGCAGGCTGGGAAGCGCGGGAAGCCGTGGAAGCGTCAGCGCGGAG
GAGGGGAAGCGAAGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18194:1454..2920-

>mRNA_L-elsbetiae_contig18194.5251.1 ID=mRNA_L-elsbetiae_contig18194.5251.1|Name=mRNA_L-elsbetiae_contig18194.5251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig18194:1454..2920- (Laminarionema elsbetiae ELsaHSoW15)
GCGTCGGCGAGTGCCAGCGGCAAGAAGGCCGCGGCGGCCAAGCAGAAGGT
GGCGAAGTCAGTGGGCACCTCCAAAGCCAAACGAGACGCGGCCCTCGCCA
AGAAGCGCGGGCTGTCGGCCAGCGCCAAAGCGTCGCCGGCCAAGATCGAC
GCCGAGGTGCAGCGCACCAAGACGCAGGCGTCGGCGAGTGCCAGCGGCAA
GAAGGCCGCGGCGGCCAAGCAGAAGGTGGCGAAGTCAGTGGGCACCTCCA
AAGCCAAACGAGACGCGGCCCTCGCCAAGAAGCGCGGGCTGTCGGCCAGC
GCCAAAGCGTCGCCGGCCAAGATCGACGCCGAGGTGCAGCGCACCAAGAC
GCAGCAATCCAAGAAGAAGGCGCGAAAAAACGCCGACGCGCTGGTCGCCA
GCACGAAGGGCGTGAGCAAGGCCAAAGCCAAGAAGGCCAAGGCGGCGGCG
GCAGCGGCAGCGGCAGCGGCGGCGGCAGCGGCATCCCAAAAGGGCGGGAG
GAAAGCGGCGGGCGCGAGCGCCAAGTCCAAGCGCGGCGGCGCCAGGCCGG
GCGGCAAGAAGCAGGGCGCCGGCCCCGGCGGTCCCAAGCAGACCGCGCCG
AACGTCAAGGGGACGGGCTTCAGCGTAGGGGTCAAGGGCGCCGGCAAAAA
ACAGAAGCAGCAGGCGCAGCAGCTGCAGCAGGCGCAGCAGGAGCAGCTGC
AGCAGGCGCAGCAGGAGCAGCTGCAGCTGCAGCAGCAGGCTGGGAAGCGC
GGGAAGCCGTGGAAGCGTCAGCGCGGAGGAGGGGAAGCGAAGGCGCAATC
CAAGAAGAAGGCGCGAAAAAACGCCGACGCGCTGGTCGCCAGCACGAAGG
GCGTGAGCAAGGCCAAAGCCAAGAAGGCCAAGGCGGCGGCGGCAGCGGCA
GCGGCAGCGGCGGCGGCAGCGGCATCCCAAAAGGGCGGGAGGAAAGCGGC
GGGCGCGAGCGCCAAGTCCAAGCGCGGCGGCGCCAGGCCGGGCGGCAAGA
AGCAGGGCGCCGGCCCCGGCGGTCCCAAGCAGACCGCGCCGAACGTCAAG
GGGACGGGCTTCAGCGTAGGGGTCAAGGGCGCCGGCAAAAAACAGAAGCA
GCAGGCGCAGCAGCTGCAGCAGGCGCAGCAGGAGCAGCTGCAGCAGGCGC
AGCAGGAGCAGCTGCAGCTGCAGCAGCAGGCTGGGAAGCGCGGGAAGCCG
TGGAAGCGTCAGCGCGGAGGAGGGGAAGCGAAGGCG
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