mRNA_L-elsbetiae_contig18191.5250.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18191.5250.1
Unique NamemRNA_L-elsbetiae_contig18191.5250.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig18191.5250.1 vs. uniprot
Match: D7FPB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB0_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.650e-30
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 SVPIGAGDDPHMTGSLSQLVLELSAIATGGEEDRLSFVAQGPLDAIMRCLKGGRAAQQQGALDALTTV 204
            SVPIGAGDDPHMTGSLSQLVL+LSA+A  GEE+RLSFV QGPLDAIMRCL+GGRAAQQQ ALDALTTV
Sbjct:  153 SVPIGAGDDPHMTGSLSQLVLDLSAVAMEGEENRLSFVGQGPLDAIMRCLRGGRAAQQQCALDALTTV 220
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18191.5250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPB0_ECTSI2.650e-3088.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18191contigL-elsbetiae_contig18191:175..1521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-15_004080.1
Exons2
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.1460574-CDS-L-elsbetiae_contig18191:174..2851622815758.1460574-CDS-L-elsbetiae_contig18191:174..285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18191 175..285 -
1691683083.4164572-CDS-L-elsbetiae_contig18191:174..2851691683083.4164572-CDS-L-elsbetiae_contig18191:174..285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18191 175..285 -
1622815758.156762-CDS-L-elsbetiae_contig18191:1428..15211622815758.156762-CDS-L-elsbetiae_contig18191:1428..1521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18191 1429..1521 -
1691683083.4253955-CDS-L-elsbetiae_contig18191:1428..15211691683083.4253955-CDS-L-elsbetiae_contig18191:1428..1521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18191 1429..1521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18191.5250.1prot_L-elsbetiae_contig18191.5250.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18191 175..1521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18191.5250.1

>prot_L-elsbetiae_contig18191.5250.1 ID=prot_L-elsbetiae_contig18191.5250.1|Name=mRNA_L-elsbetiae_contig18191.5250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
SVPIGAGDDPHMTGSLSQLVLELSAIATGGEEDRLSFVAQGPLDAIMRCL
KGGRAAQQQGALDALTTV
back to top

mRNA from alignment at L-elsbetiae_contig18191:175..1521-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18191.5250.1 ID=mRNA_L-elsbetiae_contig18191.5250.1|Name=mRNA_L-elsbetiae_contig18191.5250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1347bp|location=Sequence derived from alignment at L-elsbetiae_contig18191:175..1521- (Laminarionema elsbetiae ELsaHSoW15)
AGCGTGCCCATCGGCGCCGGAGACGACCCTCACATGACGGGCTCGCTGAG
CCAACTCGTTCTTGAGCTGTCGGCCATCGCCACGGGTGGCGAGGTAGGCT
TGGCGCCGCCGCCGCGGACAAGAGCTACTGATTTTTTTTGTCACAAATGC
GTAAAGCTTGTTGTACCATGCCAATGCCTGATGCGCTCACGTTTACACTG
CAGCCGACCCTCTGAAGAGTATTTTTCACCAACGAACTTGTGTATGGTAT
ATTTTATGGACTAAATACGGATCTTCTTGTGCGAGTATATCTTGGGATGA
GAAGAAAAAAAAACAAAAAAGCCTACAACAGACAGTAGTCCCTCTGGAAA
ACGACTGCTTCACAGACTGGACGTAGGCTGCTGACATTTGTATGCATTAA
TTAAAAATACCGGTTTTCAATATATAAATATACATTAATTAATCATTACC
GATTTTTATTGAATTTCCTACGGATTTTGTGCGAATGTATCTGGGATGAG
AAAAAAAAAAAAAAACGCCTACAACAGACAGTAGTCCCTCTGGAAAACGA
CTGCTTCACAGACTGGACGTAGACTGCTGACATTTGTAAAACATTACTTA
AAACTTGTGGCTTGGATGGGGAGGGAGGGTTCTTTAGTATGTCTTACCTA
CACAATACACCAGTTTTCTTTTTTTTTCCCTGGAACGATTTTTTCGCAGA
CTGGACGTTGCTATTTAGCTATATATAGACTGCTGACACTTGTTTGTAGA
CGTTTGTTGAAAGCCTGGTATACATACATAGTCTTAAGTGCGTTAGAATG
CGGCATGCATGGTTCTACCCCACCGAAGATGCATCGTCCGCCAGTTCTAT
TAAGGCATGAGAAACCTTGCAGAGAGAAAATGGGCTCTTGCTTGTTGTTA
ATTAAGGGACCGTCGCCTGATCTCGATCGCCCCCACTGAGATTGCGTATT
TTTTAGAATATGTATTTTTTACTCCGTATAGTGCGGAACAGGTACCTACG
CGGTGGGTTTGCAGGTTATTTTCCCACCCTAAAAACCCCTCTCAAATCCA
CGCCCACGACGCCGTGGATAAACCCGTTTCGGTCAGAACGTGTGTTACGT
GGTACATACAATACACCAATGCATCCGTGGAGGGGAGGAAAGGGCGTCCA
TCTCCGACGCAATCGACGGCTGCATGTTTTCCCCCCTCGCTCGATCGCTC
GATCGCTCGATCGCTCGCTCCGCTCCCGGTTGGCAGGAAGACCGCCTCTC
CTTTGTGGCGCAGGGGCCCCTCGACGCCATCATGCGGTGCCTCAAGGGCG
GCAGGGCGGCGCAACAGCAGGGCGCCCTTGATGCGCTCACCACGGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18191:175..1521-

>mRNA_L-elsbetiae_contig18191.5250.1 ID=mRNA_L-elsbetiae_contig18191.5250.1|Name=mRNA_L-elsbetiae_contig18191.5250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig18191:175..1521- (Laminarionema elsbetiae ELsaHSoW15)
AGCGTGCCCATCGGCGCCGGAGACGACCCTCACATGACGGGCTCGCTGAG
CCAACTCGTTCTTGAGCTGTCGGCCATCGCCACGGGTGGCGAGAGCGTGC
CCATCGGCGCCGGAGACGACCCTCACATGACGGGCTCGCTGAGCCAACTC
GTTCTTGAGCTGTCGGCCATCGCCACGGGTGGCGAGGAAGACCGCCTCTC
CTTTGTGGCGCAGGGGCCCCTCGACGCCATCATGCGGTGCCTCAAGGGCG
GCAGGGCGGCGCAACAGCAGGGCGCCCTTGATGCGCTCACCACGGTGGAA
GACCGCCTCTCCTTTGTGGCGCAGGGGCCCCTCGACGCCATCATGCGGTG
CCTCAAGGGCGGCAGGGCGGCGCAACAGCAGGGCGCCCTTGATGCGCTCA
CCACGGTG
back to top