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Homology
BLAST of mRNA_L-elsbetiae_contig1819.5248.1 vs. uniprot
Match: D8LS33_ECTSI (Conserved Cys-containing small protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS33_ECTSI) HSP 1 Score: 150 bits (379), Expect = 2.120e-41 Identity = 91/144 (63.19%), Postives = 103/144 (71.53%), Query Frame = 1
Query: 1 MREKSEEEV-LTAELSSCMLSHYKYCAAGVLLGLPLSIHKKSYWPVALAAVAGTAADFKEGSANCKQQREALMACVARRKAAEAAKTQSAQPLPAGTTAGD---QAQEDWPAGGQQWPEKG-WEQSF-DGSGGQEADSEGKTKW 414
MRE+S+EE L AELSSCMLSHYKYCAAGVLLGLPLS+HKKSYWPV LAAVAGTAADFKEG+A+C+ QREALMA +AR+ A +A Q A AGTT QE WP G+ WEQ+F D GG+E D EG KW
Sbjct: 1 MREQSKEEAELAAELSSCMLSHYKYCAAGVLLGLPLSVHKKSYWPVTLAAVAGTAADFKEGTADCRPQREALMAFIARKNAGQAKAQQEAS---AGTTENPGQHSPQEGWPGEGRXXXXXXXWEQTFHDRDGGKEVDREGGDKW 141
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Conserved Cys-containing small protein |
| Ec32 ortholog | Ec-08_001970.1 |
| Exons | 3 |
| Model size | 1014 |
| Cds size | 417 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815758.009267-CDS-L-elsbetiae_contig1819:21028..21097 | 1622815758.009267-CDS-L-elsbetiae_contig1819:21028..21097 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1819 21029..21097 + |
| 1691683083.3393188-CDS-L-elsbetiae_contig1819:21028..21097 | 1691683083.3393188-CDS-L-elsbetiae_contig1819:21028..21097 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1819 21029..21097 + |
| 1622815758.0251544-CDS-L-elsbetiae_contig1819:21894..22002 | 1622815758.0251544-CDS-L-elsbetiae_contig1819:21894..22002 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1819 21895..22002 + |
| 1691683083.3518715-CDS-L-elsbetiae_contig1819:21894..22002 | 1691683083.3518715-CDS-L-elsbetiae_contig1819:21894..22002 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1819 21895..22002 + |
| 1622815758.0446894-CDS-L-elsbetiae_contig1819:22704..22944 | 1622815758.0446894-CDS-L-elsbetiae_contig1819:22704..22944 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1819 22705..22944 + |
| 1691683083.366046-CDS-L-elsbetiae_contig1819:22704..22944 | 1691683083.366046-CDS-L-elsbetiae_contig1819:22704..22944 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1819 22705..22944 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815758.0638418-UTR-L-elsbetiae_contig1819:22944..23541 | 1622815758.0638418-UTR-L-elsbetiae_contig1819:22944..23541 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1819 22945..23541 + |
| 1691683083.38057-UTR-L-elsbetiae_contig1819:22944..23541 | 1691683083.38057-UTR-L-elsbetiae_contig1819:22944..23541 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1819 22945..23541 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1819.5248.1 >prot_L-elsbetiae_contig1819.5248.1 ID=prot_L-elsbetiae_contig1819.5248.1|Name=mRNA_L-elsbetiae_contig1819.5248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MREKSEEEVLTAELSSCMLSHYKYCAAGVLLGLPLSIHKKSYWPVALAAV
AGTAADFKEGSANCKQQREALMACVARRKAAEAAKTQSAQPLPAGTTAGD
QAQEDWPAGGQQWPEKGWEQSFDGSGGQEADSEGKTKW* back to topmRNA from alignment at L-elsbetiae_contig1819:21029..23541+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1819.5248.1 ID=mRNA_L-elsbetiae_contig1819.5248.1|Name=mRNA_L-elsbetiae_contig1819.5248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2513bp|location=Sequence derived from alignment at L-elsbetiae_contig1819:21029..23541+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGGAAAAGTCTGAGGAGGAAGTGCTGACTGCCGAGCTGTCAAGCTG
CATGCTTTCGCACTACAAGGTGAGTCCATCGTGCAAAGCAAATTGCTTGT
TGGCCATGTAAGAGGCATGAGTGTCTCCGTAGCTCGACGTATAGATAGTG
TACCAGTGCTGAAGCGTGAGGTACTAGGCTCTAGCCAGTTTGCGTGCAGG
AGGTATTGTGTCTTTATGTGTTCCCTCTCCTCTGAATTGACATGCCTGTG
AGTGTATCACTGGTGACTGCTGACCCCGGTACCTGTGCCCACGGAGGAAC
CTACATATGAGAAACAGGGTTTTAGACGACATGAAATACCGCACTGCTGT
GTTTACTTTCCAAACGAATCATCTACCGAGCACTGGTAAATGCGGGTGTG
TCCGTAAGAAAAAGAAAAACAAGTCGTTTTTGCGGTGTACTACTGCTAAA
TAACCTAGTCTTTGTACCGTCCGTAATGACACAATATACCACCCCCCCTT
TTGGTTTGAAATAGTTTCATATCTCCCGAGAGGGTAATATTTTGTGTGGT
ATCCGGTAGTTGACTGCGATAAACGTAATTCGGGTAAACCGATATGTAGC
AGCTCCTACGGCCTAGATGTGTAGACTACTTCACCAGTAGTAGTGAAAGG
TACGCTGATACACACAGTGCATGTGTTTATTTGCACAACTGCACCTTTGA
TACCTCTATTGCAGCATGGCGACAACTTAACCCACCCTGTTGGTGGATAT
CTGATACCCACCCGGCTGGCACTCCGTGTGTCGGCAGCAATGTCTTCATC
ACTTTGTGGGCGTAACAGGCTAGTCAACATAGTTGTGTAGTACAATCTTT
TCTTTCCCGCGCCCAGTACTGCGCAGCTGGGGTGTTGCTCGGCCTGCCGC
TGAGCATCCACAAGAAGAGCTATTGGCCAGTGGCGCTGGCGGCGGTGGCG
GGAACGGCGGCGGATTTCAAAGAGGTGAGATACTGCTGCAGGGAAAGCAT
CATGTTTTCTGGTGTCACAAAACTCGCCTGCTACACTCCTTTGGTTGTAA
GGTCTATGTAAGTTGCTGCGTGCTCGTGCACGCCACGATCAACAGTTGGG
TCTGTGCCTCTTCCGGCTGCAAAGCTATCTGCGACGTCGGTTCAGCGCCT
CAGCGACAGCAGTTGGTTAGGTACTTCGTATTAAATGTTGTTCTAGCCAA
ACTCTCCGAGCTGTGTCGGCACCCGAGATCAACACAAGGTTTGCTTTTGA
CAGCCGAACACGAGGGGGCGCGGCTTTCGCGATAATGGGGGTAATTGTTT
TCCTCTGGGTTCCGGTGGGTGGTGTGGCTTACAGAAAATGGCAACACTCG
ACAATTTGCCTAGAGCCACTGCCTTTCCTGAAGAATATGGACACGATCGC
AAGTGCTGTCAAGGCCCGGGCATAACAGCAGTTAGAACATCTTCACTTTG
GGGCTGATCTAGGCACCAAATAGTAGGAGAAACCCTCACAGAATTCGCAA
TAGAGGGCAGGGCGGGTGTCCCTGTTTGCCTGTATCTGCTCCTTCACAAC
ACCGCCAACGTTTCTCCTTTGTAGGGTACGGTATGTATCTACCAATTCAC
GCGTCGTGAGCTGTTCGCGGTGGCACTTTCCCTCCAAAAAAATGGTTGAT
TCTGACCCCATCTTGCAAATGGACAGGGTAGCGCCAACTGCAAGCAACAA
AGAGAGGCTTTGATGGCGTGCGTTGCTCGAAGAAAAGCCGCGGAGGCGGC
AAAGACGCAATCAGCACAACCGCTGCCAGCTGGAACTACCGCAGGAGATC
AGGCGCAGGAGGATTGGCCCGCGGGTGGGCAGCAATGGCCTGAGAAGGGA
TGGGAGCAGAGTTTTGATGGTAGCGGCGGCCAAGAGGCAGACAGTGAGGG
CAAGACGAAGTGGTGACCCCCCCCCCCACACTCTCCTCCCTTTTATCAAC
AATTGCCGCAAATCGTTCAGGAAATTCATGCTTGAAGTTCCCGATCGGTC
GCCTCCATCGCCAAGTTGGTAAAGCAGTACAGTAGTCTCGAAAGCTTCAA
GCAGCAAAGTTGTAAGATTCGAAAAATGTGATTTCGGTCTCTCTTGCCAG
TGGAAAGTTCGCAATTCGGCTGATTCCGGTCTCTCTCGCGAGTGGAAACT
TGGCAATTCGCCTGTGGGAAGCGATTAGCGTAAGCATACACTCCCTCAAG
AGGGGAATGGGCTGTTTGCCCTGCTTATAGTGTCATGTGCTCAACTGCTG
TTTGTCGAACGGTGCTGCCACCTCATCCGCTTAGATAACTTATTCCTTTT
ATGTAGCACTAGAAGCACGTTTGGTGACGATTTGGCAACACCTAACGTTG
GCCTCTGTTTTATTGCTTTGGAGTGCACAGGCGGTCTTAACCCTTTTGTG
ACTAGAGCCCTGTGGAGTGAGGGTAGTAGTGAGGGTCGAGTTGCGAGCCT
TGTCGTGCCAGTTAACGCTGCAAATAAAAGCTCCGCGCGTTCCTGCGGGT
GCTGCGGTGATGT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1819:21029..23541+ >mRNA_L-elsbetiae_contig1819.5248.1 ID=mRNA_L-elsbetiae_contig1819.5248.1|Name=mRNA_L-elsbetiae_contig1819.5248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig1819:21029..23541+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGGAAAAGTCTGAGGAGGAAGTGCTGACTGCCGAGCTGTCAAGCTG
CATGCTTTCGCACTACAAGATGAGGGAAAAGTCTGAGGAGGAAGTGCTGA
CTGCCGAGCTGTCAAGCTGCATGCTTTCGCACTACAAGTACTGCGCAGCT
GGGGTGTTGCTCGGCCTGCCGCTGAGCATCCACAAGAAGAGCTATTGGCC
AGTGGCGCTGGCGGCGGTGGCGGGAACGGCGGCGGATTTCAAAGAGTACT
GCGCAGCTGGGGTGTTGCTCGGCCTGCCGCTGAGCATCCACAAGAAGAGC
TATTGGCCAGTGGCGCTGGCGGCGGTGGCGGGAACGGCGGCGGATTTCAA
AGAGGGTAGCGCCAACTGCAAGCAACAAAGAGAGGCTTTGATGGCGTGCG
TTGCTCGAAGAAAAGCCGCGGAGGCGGCAAAGACGCAATCAGCACAACCG
CTGCCAGCTGGAACTACCGCAGGAGATCAGGCGCAGGAGGATTGGCCCGC
GGGTGGGCAGCAATGGCCTGAGAAGGGATGGGAGCAGAGTTTTGATGGTA
GCGGCGGCCAAGAGGCAGACAGTGAGGGCAAGACGAAGTGGTGAGGTAGC
GCCAACTGCAAGCAACAAAGAGAGGCTTTGATGGCGTGCGTTGCTCGAAG
AAAAGCCGCGGAGGCGGCAAAGACGCAATCAGCACAACCGCTGCCAGCTG
GAACTACCGCAGGAGATCAGGCGCAGGAGGATTGGCCCGCGGGTGGGCAG
CAATGGCCTGAGAAGGGATGGGAGCAGAGTTTTGATGGTAGCGGCGGCCA
AGAGGCAGACAGTGAGGGCAAGACGAAGTGGTGA back to top
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