mRNA_L-elsbetiae_contig18062.5184.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18062.5184.1
Unique NamemRNA_L-elsbetiae_contig18062.5184.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18062.5184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18062contigL-elsbetiae_contig18062:1343..2395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size256
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.0840228-CDS-L-elsbetiae_contig18062:1342..14351622815753.0840228-CDS-L-elsbetiae_contig18062:1342..1435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18062 1343..1435 -
1691683080.4072418-CDS-L-elsbetiae_contig18062:1342..14351691683080.4072418-CDS-L-elsbetiae_contig18062:1342..1435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18062 1343..1435 -
1622815753.0999124-CDS-L-elsbetiae_contig18062:2233..23951622815753.0999124-CDS-L-elsbetiae_contig18062:2233..2395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18062 2234..2395 -
1691683080.416086-CDS-L-elsbetiae_contig18062:2233..23951691683080.416086-CDS-L-elsbetiae_contig18062:2233..2395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18062 2234..2395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18062.5184.1prot_L-elsbetiae_contig18062.5184.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18062 1343..2395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18062.5184.1

>prot_L-elsbetiae_contig18062.5184.1 ID=prot_L-elsbetiae_contig18062.5184.1|Name=mRNA_L-elsbetiae_contig18062.5184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
GIGSSGSNAYAFTGDCDIFSFACGAAMSDTNADGDDCGDRVQGPVYLEEA
IEVTAPCIANSDGNFELPYCFGFDNSDSEVCGIDP
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mRNA from alignment at L-elsbetiae_contig18062:1343..2395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18062.5184.1 ID=mRNA_L-elsbetiae_contig18062.5184.1|Name=mRNA_L-elsbetiae_contig18062.5184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1053bp|location=Sequence derived from alignment at L-elsbetiae_contig18062:1343..2395- (Laminarionema elsbetiae ELsaHSoW15)
GGGATTGGCTCCAGCGGCAGCAACGCCTATGCCTTCACGGGAGACTGTGA
CATATTCTCGTTCGCATGTGGCGCTGCTATGTCTGATACTAATGCAGACG
GCGATGACTGCGGTGACAGAGTCCAGGGGCCTGTCTATTTGGAGGAGGCG
ATTGAAGTGACGGTGCGTCCAAGCGCAACTTCTTACTATAGTTGTAGCTG
TTTTGGAGCTAATGGAGCACAGAGACGTCCAGCAGTTCGTCGCTTCGTGC
GTTGGAGGCTCGAGTATCGGGGACAAGCAAACGGTAGTCTCGAGAGATTG
CCCTGGGTTATCTCAACACCTCCTTCGTTGTTTTTATGCACCATTTCTCA
CGAATGCCGCCTATACCCACCCATGGGATGGCAGCATTGCCAAACTTGAA
ACCCGAACGCGACACGAACACACTTAATCTTGCCCGGTGGATCTGTGTAT
GTATGTCCTTTTTCGGATCTTCTGATGGCTCTAGCACTTCTGTGACCACG
GGCCGTGAGTTGCTAGATTTTTGGAATTAGCAATCTCGATTATACGAGCT
AATGTGAAGAAACAACAACAACAACCTCCGGTTGGGTCGTCTAGCTAGTC
GTAGTGGAGCATGGGGGCCAGTGGGGCAGACGACGAAAATGCCAAAATCT
AATGGAAGGGGGGAAAAAAACGACAAGGTACCGACAGAACAAGAAGAGCA
GATGTTGGAAATCACATGGCCACCAAATGTCTCACGCAGGGTGTGGCGCC
AATCTCACTTGGCTCTTAATTAATGAACAAAAGCAGGAAAGCAAGATGCG
TCGTTCGTACATGCGTTAATCAGGCCCATCTGTAAAATCTTCCCTTTCTG
ACGAAATTCGTCACGGCGCCCCTGCATACAACCCTCACAACCGACCCTCT
CGGCTGTTAACCCACTGACACGAGCTATACCGATCCTTTGTTCTCGTGAT
TTCCCCACAGGCACCATGCATCGCAAACTCTGATGGCAACTTCGAGCTTC
CTTACTGCTTCGGATTTGACAACAGCGACTCGGAGGTATGCGGCATCGAC
CCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18062:1343..2395-

>mRNA_L-elsbetiae_contig18062.5184.1 ID=mRNA_L-elsbetiae_contig18062.5184.1|Name=mRNA_L-elsbetiae_contig18062.5184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig18062:1343..2395- (Laminarionema elsbetiae ELsaHSoW15)
GGGATTGGCTCCAGCGGCAGCAACGCCTATGCCTTCACGGGAGACTGTGA
CATATTCTCGTTCGCATGTGGCGCTGCTATGTCTGATACTAATGCAGACG
GCGATGACTGCGGTGACAGAGTCCAGGGGCCTGTCTATTTGGAGGAGGCG
ATTGAAGTGACGGGGATTGGCTCCAGCGGCAGCAACGCCTATGCCTTCAC
GGGAGACTGTGACATATTCTCGTTCGCATGTGGCGCTGCTATGTCTGATA
CTAATGCAGACGGCGATGACTGCGGTGACAGAGTCCAGGGGCCTGTCTAT
TTGGAGGAGGCGATTGAAGTGACGGCACCATGCATCGCAAACTCTGATGG
CAACTTCGAGCTTCCTTACTGCTTCGGATTTGACAACAGCGACTCGGAGG
TATGCGGCATCGACCCCGCACCATGCATCGCAAACTCTGATGGCAACTTC
GAGCTTCCTTACTGCTTCGGATTTGACAACAGCGACTCGGAGGTATGCGG
CATCGACCCC
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