mRNA_L-elsbetiae_contig1805.5177.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1805.5177.1
Unique NamemRNA_L-elsbetiae_contig1805.5177.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1805.5177.1 vs. uniprot
Match: A0A6H5JNT4_9PHAE (FSH1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT4_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 9.440e-10
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = -1 
Query:  295 RTWWRCDAEERKRAKAVPGMAGRCEWKV 378
            RTWWRCD EERKRAKAVPGMAGRCEWKV
Sbjct:  574 RTWWRCDPEERKRAKAVPGMAGRCEWKV 601
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BLAST of mRNA_L-elsbetiae_contig1805.5177.1 vs. uniprot
Match: D8LNF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF9_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 3.330e-9
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = -1 
Query:  298 RTWWRCDAEERKRAKAVPGMAGRCEWK 378
            RTWWRCD EERKRAKAVPGMAGRCEWK
Sbjct:  567 RTWWRCDPEERKRAKAVPGMAGRCEWK 593
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1805.5177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNT4_9PHAE9.440e-1096.43FSH1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LNF9_ECTSI3.330e-996.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1805contigL-elsbetiae_contig1805:11658..12037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size382
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.5454373-CDS-L-elsbetiae_contig1805:11657..120351622815752.5454373-CDS-L-elsbetiae_contig1805:11657..12035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1805 11658..12035 +
1691683080.0419173-CDS-L-elsbetiae_contig1805:11657..120351691683080.0419173-CDS-L-elsbetiae_contig1805:11657..12035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1805 11658..12035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1805.5177.1prot_L-elsbetiae_contig1805.5177.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1805 11658..12035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1805.5177.1

>prot_L-elsbetiae_contig1805.5177.1 ID=prot_L-elsbetiae_contig1805.5177.1|Name=mRNA_L-elsbetiae_contig1805.5177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
STPCSGIREYNIKSRIVRRGWMGEAVGLCYANIGWCLVYRWLVDCLFGSA
SARFPFLPLYTQQPQQKETTVEHGQKKQKALPRTTKRVMTHPYHDSSTYL
PLAPPGHPRHGLRPLPLLRIAPPPRP
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mRNA from alignment at L-elsbetiae_contig1805:11658..12037+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1805.5177.1 ID=mRNA_L-elsbetiae_contig1805.5177.1|Name=mRNA_L-elsbetiae_contig1805.5177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=380bp|location=Sequence derived from alignment at L-elsbetiae_contig1805:11658..12037+ (Laminarionema elsbetiae ELsaHSoW15)
TCGACACCCTGCAGCGGTATACGTGAATACAACATAAAGAGTCGAATCGT
GCGTCGGGGATGGATGGGAGAGGCGGTGGGTCTGTGCTACGCAAACATTG
GCTGGTGTCTTGTCTATCGCTGGCTGGTTGATTGCTTGTTTGGGAGCGCT
TCGGCGCGCTTTCCCTTCCTCCCTCTCTACACGCAACAACCACAGCAAAA
AGAAACGACGGTAGAGCACGGCCAGAAAAAGCAGAAGGCCTTGCCGCGCA
CCACAAAACGCGTCATGACTCATCCATATCATGACTCATCTACATACCTT
CCACTCGCACCGCCCGGCCATCCCCGGCACGGCCTTCGCCCGCTTCCGCT
CCTCCGCATCGCACCGCCACCACGTCCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1805:11658..12037+

>mRNA_L-elsbetiae_contig1805.5177.1 ID=mRNA_L-elsbetiae_contig1805.5177.1|Name=mRNA_L-elsbetiae_contig1805.5177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig1805:11658..12037+ (Laminarionema elsbetiae ELsaHSoW15)
TCGACACCCTGCAGCGGTATACGTGAATACAACATAAAGAGTCGAATCGT
GCGTCGGGGATGGATGGGAGAGGCGGTGGGTCTGTGCTACGCAAACATTG
GCTGGTGTCTTGTCTATCGCTGGCTGGTTGATTGCTTGTTTGGGAGCGCT
TCGGCGCGCTTTCCCTTCCTCCCTCTCTACACGCAACAACCACAGCAAAA
AGAAACGACGGTAGAGCACGGCCAGAAAAAGCAGAAGGCCTTGCCGCGCA
CCACAAAACGCGTCATGACTCATCCATATCATGACTCATCTACATACCTT
CCACTCGCACCGCCCGGCCATCCCCGGCACGGCCTTCGCCCGCTTCCGCT
CCTCCGCATCGCACCGCCACCACGTCCGTCGACACCCTGCAGCGGTATAC
GTGAATACAACATAAAGAGTCGAATCGTGCGTCGGGGATGGATGGGAGAG
GCGGTGGGTCTGTGCTACGCAAACATTGGCTGGTGTCTTGTCTATCGCTG
GCTGGTTGATTGCTTGTTTGGGAGCGCTTCGGCGCGCTTTCCCTTCCTCC
CTCTCTACACGCAACAACCACAGCAAAAAGAAACGACGGTAGAGCACGGC
CAGAAAAAGCAGAAGGCCTTGCCGCGCACCACAAAACGCGTCATGACTCA
TCCATATCATGACTCATCTACATACCTTCCACTCGCACCGCCCGGCCATC
CCCGGCACGGCCTTCGCCCGCTTCCGCTCCTCCGCATCGCACCGCCACCA
CGTCCG
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