mRNA_L-elsbetiae_contig18047.5176.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18047.5176.1
Unique NamemRNA_L-elsbetiae_contig18047.5176.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18047.5176.1 vs. uniprot
Match: A0A7S2RPM8_9STRA (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPM8_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.710e-41
Identity = 63/105 (60.00%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:    1 HDNIVYHGHLATEKWHELLRESKFVIGLGNPLSGPSAVDAVAAGCVFINPIFARPVKTIYNSQHPFLAQSVGEPYVCSFEQKDSNAAIECARKALEQDLPPLVPQ 315
            H +IVYHGHL  E W  LL ES+F+IGLGNPL GPSAVDAV AGC++INP ++ PVK +Y+SQHP+LA+ VGEPYVC+    D  A   C  +AL  DLPP++P+
Sbjct:   55 HPSIVYHGHLTPEGWQSLLAESRFMIGLGNPLVGPSAVDAVVAGCMYINPKYSAPVKEVYHSQHPYLAEQVGEPYVCTANLNDVAAVKACVHQALSADLPPMIPR 159
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BLAST of mRNA_L-elsbetiae_contig18047.5176.1 vs. uniprot
Match: A0A6H5JS43_9PHAE (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS43_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 6.240e-41
Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 1 
Query:    1 HDNIVYHGHLATEKWHELLRESKFVIGLGNPLSGPSAVDAVAAGCVFINPIFARPVKTIYNSQHPFLAQSVGEPYVCSFEQ 243
            HDNIVYHG+L  ++W++LL+ESKF+IGLGNPL GPSAVDAV AGC ++NPIF RP K IYNSQHPFLAQ VGEPYVCSFEQ
Sbjct:  100 HDNIVYHGYLPQDEWNQLLQESKFIIGLGNPLLGPSAVDAVTAGCAYLNPIFFRPEKKIYNSQHPFLAQRVGEPYVCSFEQ 180
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BLAST of mRNA_L-elsbetiae_contig18047.5176.1 vs. uniprot
Match: A0A7S3UVM7_HETAK (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVM7_HETAK)

HSP 1 Score: 118 bits (296), Expect = 5.090e-32
Identity = 51/102 (50.00%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:   10 IVYHGHLATEKWHELLRESKFVIGLGNPLSGPSAVDAVAAGCVFINPIFARPVKTIYNSQHPFLAQSVGEPYVCSFEQKDSNAAIECARKALEQDLPPLVPQ 315
            +V H HL    WH LL ESKF++GL +PL GPSAVDAV+ GC+FINP++++P    Y SQHP++A +VGEPYVC+   ++ ++  +C +KAL   L P +P+
Sbjct:   28 LVVHQHLDPNGWHSLLAESKFLLGLEDPLLGPSAVDAVSNGCMFINPVYSKPKLDFYTSQHPYIADTVGEPYVCNTRLQEISSVEKCVQKALGSSLKPFIPK 129
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BLAST of mRNA_L-elsbetiae_contig18047.5176.1 vs. uniprot
Match: A0A7S3UWN5_HETAK (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWN5_HETAK)

HSP 1 Score: 118 bits (296), Expect = 3.320e-30
Identity = 51/102 (50.00%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:   10 IVYHGHLATEKWHELLRESKFVIGLGNPLSGPSAVDAVAAGCVFINPIFARPVKTIYNSQHPFLAQSVGEPYVCSFEQKDSNAAIECARKALEQDLPPLVPQ 315
            +V H HL    WH LL ESKF++GL +PL GPSAVDAV+ GC+FINP++++P    Y SQHP++A +VGEPYVC+   ++ ++  +C +KAL   L P +P+
Sbjct:  201 LVVHQHLDPNGWHSLLAESKFLLGLEDPLLGPSAVDAVSNGCMFINPVYSKPKLDFYTSQHPYIADTVGEPYVCNTRLQEISSVEKCVQKALGSSLKPFIPK 302
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BLAST of mRNA_L-elsbetiae_contig18047.5176.1 vs. uniprot
Match: A0A7S0W0V7_9CRYP (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W0V7_9CRYP)

HSP 1 Score: 108 bits (271), Expect = 1.860e-25
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:    1 HDNIVYHGHLATEKWHELLRESKFVIGLGNPLSGPSAVDAVAAGCVFINPIFARPVKTIYNSQHPFLAQSVGEPYVCSFEQKDSNAAIECARKALEQDLPPLV 309
            H+NI +HG L +++W  LL ESK+  GLGNPL+GPSA+DA+AAGCV+ +P F  P    Y SQ+PFL+  VG P+VC  +    +    CA  AL   + PL+
Sbjct:  356 HENITWHGTLNSDQWFRLLAESKYFAGLGNPLAGPSAIDAIAAGCVYFDPTFKEPPLPTYTSQNPFLSSRVGAPHVCVVQMGSRSEYERCALAALTGSVQPLI 458
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BLAST of mRNA_L-elsbetiae_contig18047.5176.1 vs. uniprot
Match: A0A7S3YPU8_9EUKA (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YPU8_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 6.930e-25
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:    1 HDNIVYHGHLATEKWHELLRESKFVIGLGNPLSGPSAVDAVAAGCVFINPIFARPVKTIYNSQHPFLAQSVGEPYVCSFEQKDSNA-AIECARKALEQDLPPLVP 312
            H NI   GHL+ E W  LLR  KF++GLG+PL GPSA+DA+AAG +F+NP + +P    Y SQHPF A+S     VC+F+ + S    +EC  KA+ QDL P VP
Sbjct:  162 HPNITSVGHLSPEGWEALLRSHKFLLGLGDPLVGPSAIDAIAAGAMFLNPHYRQPKLDHYRSQHPF-AESSTPDSVCAFDLEGSGEDLVECVEKAVGQDLAPSVP 265
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BLAST of mRNA_L-elsbetiae_contig18047.5176.1 vs. uniprot
Match: A0A7S4KDV6_GUITH (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KDV6_GUITH)

HSP 1 Score: 84.0 bits (206), Expect = 1.690e-17
Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:   22 GHLATEKWHELLRESKFVIGLGNPLSGPSAVDAVAAGCVFINPIFARP-------VKTIYNSQHPFLAQSVGEPYVCSFE-----QKDSNAAIECARKALEQDLPPLVPQ 315
            G+   E++ E+L  SKF++GLG+PLSGPSA+DA+  G +++NP F          +K+ Y SQHP++A+  G  YVCSF      + D     +C  +AL   L P +P+
Sbjct:  124 GYKTKEEFREILASSKFLLGLGDPLSGPSALDAMMVGAMYLNPSFPNKNSDYPEELKSFYTSQHPYMAEH-GGAYVCSFNMISRSEPDQAQLYQCVERALRSKLEPQIPR 232
[Close]
BLAST of mRNA_L-elsbetiae_contig18047.5176.1 vs. uniprot
Match: A0A7S4KE09_GUITH (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KE09_GUITH)

HSP 1 Score: 84.0 bits (206), Expect = 1.050e-16
Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:   22 GHLATEKWHELLRESKFVIGLGNPLSGPSAVDAVAAGCVFINPIFARP-------VKTIYNSQHPFLAQSVGEPYVCSFE-----QKDSNAAIECARKALEQDLPPLVPQ 315
            G+   E++ E+L  SKF++GLG+PLSGPSA+DA+  G +++NP F          +K+ Y SQHP++A+  G  YVCSF      + D     +C  +AL   L P +P+
Sbjct:  396 GYKTKEEFREILASSKFLLGLGDPLSGPSALDAMMVGAMYLNPSFPNKNSDYPEELKSFYTSQHPYMAEH-GGAYVCSFNMISRSEPDQAQLYQCVERALRSKLEPQIPR 504
[Close]
BLAST of mRNA_L-elsbetiae_contig18047.5176.1 vs. uniprot
Match: A0A7R9YA05_9STRA (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YA05_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.890e-16
Identity = 43/116 (37.07%), Postives = 66/116 (56.90%), Query Frame = 1 
Query:    1 HDNIVYHGHLATEKWHELLRESKFVIGLGNPLSGPSAVDAVAAGCVFINPIFARPVK-----------TIYNSQHPFLAQSVGEPYVCSFEQKDSNAAIECARKALEQD-LPPLVP 312
            H NI + GH   E++ +LL  S+F+I  G+ L+ PSA+DAVA GCV+IN ++ +P               Y S+HP+L + VG PYVC+  + + +  + C  +A+    L P VP
Sbjct:  201 HPNIEFLGHKTPEEFDQLLATSRFLITFGDTLNEPSAMDAVANGCVYINTVYNKPRSINADLTRGDYGVAYRSEHPYLGERVGPPYVCTAREGELDDYMHCVDEAMRVGPLDPFVP 316
[Close]
BLAST of mRNA_L-elsbetiae_contig18047.5176.1 vs. uniprot
Match: A0A210Q687_MIZYE (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=4 Tax=Pectinidae TaxID=6566 RepID=A0A210Q687_MIZYE)

HSP 1 Score: 79.0 bits (193), Expect = 6.350e-15
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 1 
Query:   10 IVYHGHLATEKWHELLRESKFVIGLGNPLSGPSAVDAVAAGCVFINPIF-------------ARPVKTIYNSQHPFLAQSVGEPYVCSFEQKDSNAAIECARKALE 288
            +  HG L  E  H LLR+SK  +GLG P  GP+ ++A+A GCVFINP F              +P +    SQHP+  Q +GEPYV + +  + N   +   K LE
Sbjct:  506 VTNHGFLNGEDLHYLLRQSKIFVGLGFPYEGPAPLEAIANGCVFINPRFKPPHSSKNTPFFKGKPTQRQVTSQHPYAEQFIGEPYVYTIDINNLNEVKDTVAKILE 611
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18047.5176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2RPM8_9STRA5.710e-4160.00Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
A0A6H5JS43_9PHAE6.240e-4177.78Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
A0A7S3UVM7_HETAK5.090e-3250.00Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
A0A7S3UWN5_HETAK3.320e-3050.00Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
A0A7S0W0V7_9CRYP1.860e-2547.57Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
A0A7S3YPU8_9EUKA6.930e-2550.48Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
A0A7S4KDV6_GUITH1.690e-1739.09Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
A0A7S4KE09_GUITH1.050e-1639.09Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
A0A7R9YA05_9STRA1.890e-1637.07Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
A0A210Q687_MIZYE6.350e-1538.68Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18047contigL-elsbetiae_contig18047:2253..3219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue5e-16
Seed eggNOG ortholog227086.JGI_V11_82563
Preferred nameMGAT5
KEGG koko:K00744,ko:K09661
KEGG ReactionR05991,R07621,R07622,R07623,R07624,R07625
KEGG Pathwayko00510,ko00515,ko01100,map00510,map00515,map01100
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005795,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0030144,GO:0031090,GO:0031984,GO:0034645,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity
EggNOG OGs28M5P@1,2QTNG@2759
EC2.4.1.155
COG Functional cat.S
CAZyGT18
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons3
Model size316
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18047.5176.1prot_L-elsbetiae_contig18047.5176.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18047 2253..3219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.473856-CDS-L-elsbetiae_contig18047:2252..23371622815752.473856-CDS-L-elsbetiae_contig18047:2252..2337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18047 2253..2337 +
1691683080.0101519-CDS-L-elsbetiae_contig18047:2252..23371691683080.0101519-CDS-L-elsbetiae_contig18047:2252..2337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18047 2253..2337 +
1622815752.4903288-CDS-L-elsbetiae_contig18047:2690..28511622815752.4903288-CDS-L-elsbetiae_contig18047:2690..2851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18047 2691..2851 +
1691683080.022646-CDS-L-elsbetiae_contig18047:2690..28511691683080.022646-CDS-L-elsbetiae_contig18047:2690..2851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18047 2691..2851 +
1622815752.5075972-CDS-L-elsbetiae_contig18047:3150..32191622815752.5075972-CDS-L-elsbetiae_contig18047:3150..3219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18047 3151..3219 +
1691683080.0318294-CDS-L-elsbetiae_contig18047:3150..32191691683080.0318294-CDS-L-elsbetiae_contig18047:3150..3219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18047 3151..3219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18047.5176.1

>prot_L-elsbetiae_contig18047.5176.1 ID=prot_L-elsbetiae_contig18047.5176.1|Name=mRNA_L-elsbetiae_contig18047.5176.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
HDNIVYHGHLATEKWHELLRESKFVIGLGNPLSGPSAVDAVAAGCVFINP
IFARPVKTIYNSQHPFLAQSVGEPYVCSFEQKDSNAAIECARKALEQDLP
PLVPQ
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mRNA from alignment at L-elsbetiae_contig18047:2253..3219+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18047.5176.1 ID=mRNA_L-elsbetiae_contig18047.5176.1|Name=mRNA_L-elsbetiae_contig18047.5176.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=967bp|location=Sequence derived from alignment at L-elsbetiae_contig18047:2253..3219+ (Laminarionema elsbetiae ELsaHSoW15)
CATGACAACATCGTGTACCATGGCCACCTGGCTACAGAGAAGTGGCACGA
ACTTCTCAGAGAATCCAAATTCGTCATCGGTCTAGGTGAATGTTTCTTCC
ACAACCAGCCTCGTTCCCTGTGGTCGACGCAAAACGGAAGCTTTTCTGTA
GTGATGCATGTGGTTCAGCCTGGGTTGTAAAACGTCTGATTCATGACGGA
TGCTGTACTTGGCGCATCATGTAGCGGAAGCCAGCACACAGGCTTTCTGT
AGCAATCGAATGGGCATGTAGCTCATGTGCTGAGTGTGGCAGATTTTGTG
AATGTCGTCGGAGTGTTGGTGGTATTTGGTATACGGTCAACATAAGAGTT
GGCGAGTGCTTGCTTCGATATTGATCTTCTGATATGACGTCTCTGTCGAT
GTCGTTTCGTCGTCGCCGTTGCTCTGTAAACAAAACAGGGAATCCACTAT
CAGGACCATCCGCTGTTGATGCCGTGGCGGCGGGGTGCGTCTTCATCAAC
CCCATCTTTGCGAGACCGGTAAAGACCATCTACAACTCGCAGCACCCTTT
CTTAGCGCAAAGCGTGGGAGAACCGTACGTGTGCTCCTTCGAACAAAAGG
TATACCGCTAAATACCATCACCCGCCTTCAACATGCCTAGGCTCTACCTT
ACAGGCTCCAACCCGAGACTAAATGGTCCTTGACTTCATAGAATCTTCAT
CACGATCTGCTGCTCCACACTTAACATTTGTTGCAGCGTGTTCGCTCATG
ATCATTGGAGCTGATATGGATACTCGACGCAGAACACTTTGAACAGTTTG
AGATGTCTAGATTCCACTTTTGAGATGTTGACCCCAGAACTCTTGTTCTA
GGATTTCTCCTGAAGCGTACGTCTCGGGACCCTATTTGTATGGCCCAGGA
CTCGAACGCCGCGATAGAGTGCGCGCGGAAGGCGTTGGAGCAAGATCTGC
CACCATTGGTACCGCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18047:2253..3219+

>mRNA_L-elsbetiae_contig18047.5176.1 ID=mRNA_L-elsbetiae_contig18047.5176.1|Name=mRNA_L-elsbetiae_contig18047.5176.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig18047:2253..3219+ (Laminarionema elsbetiae ELsaHSoW15)
CATGACAACATCGTGTACCATGGCCACCTGGCTACAGAGAAGTGGCACGA
ACTTCTCAGAGAATCCAAATTCGTCATCGGTCTAGCATGACAACATCGTG
TACCATGGCCACCTGGCTACAGAGAAGTGGCACGAACTTCTCAGAGAATC
CAAATTCGTCATCGGTCTAGGGAATCCACTATCAGGACCATCCGCTGTTG
ATGCCGTGGCGGCGGGGTGCGTCTTCATCAACCCCATCTTTGCGAGACCG
GTAAAGACCATCTACAACTCGCAGCACCCTTTCTTAGCGCAAAGCGTGGG
AGAACCGTACGTGTGCTCCTTCGAACAAAAGGGAATCCACTATCAGGACC
ATCCGCTGTTGATGCCGTGGCGGCGGGGTGCGTCTTCATCAACCCCATCT
TTGCGAGACCGGTAAAGACCATCTACAACTCGCAGCACCCTTTCTTAGCG
CAAAGCGTGGGAGAACCGTACGTGTGCTCCTTCGAACAAAAGGACTCGAA
CGCCGCGATAGAGTGCGCGCGGAAGGCGTTGGAGCAAGATCTGCCACCAT
TGGTACCGCAAGACTCGAACGCCGCGATAGAGTGCGCGCGGAAGGCGTTG
GAGCAAGATCTGCCACCATTGGTACCGCAA
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