mRNA_L-elsbetiae_contig18033.5172.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18033.5172.1
Unique NamemRNA_L-elsbetiae_contig18033.5172.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig18033.5172.1 vs. uniprot
Match: D7G7E3_ECTSI (FA_desaturase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E3_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 3.600e-70
Identity = 97/108 (89.81%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    4 QRPRVQEVVSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHARPYLRKSILAPEDQYDPFLVRWQSFFAPVFMMLFPGATLGQTQAYLRGLREGNLWHVSIT 327
            +RPRVQE VSR+CNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHARPYLRKSILAP +QYDPFLV+WQ FFAP FMM+ PGA+LGQTQAYLRGLREGNLWHVSIT
Sbjct:  174 KRPRVQEAVSRLCNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHARPYLRKSILAPAEQYDPFLVKWQRFFAPAFMMVMPGASLGQTQAYLRGLREGNLWHVSIT 281
[Close]
BLAST of mRNA_L-elsbetiae_contig18033.5172.1 vs. uniprot
Match: A0A6H5KKY7_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY7_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 4.290e-67
Identity = 98/108 (90.74%), Postives = 104/108 (96.30%), Query Frame = 1 
Query:    4 QRPRVQEVVSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHARPYLRKSILAPEDQYDPFLVRWQSFFAPVFMMLFPGATLGQTQAYLRGLREGNLWHVSIT 327
            +RPRVQEVVSR+CNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHARPYLRKSILAP +QYDPFLV+WQ FFAP FMM+ PGA+LGQTQAYLRGLREGNLWHVSIT
Sbjct:  291 KRPRVQEVVSRLCNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHARPYLRKSILAPAEQYDPFLVKWQRFFAPAFMMVMPGASLGQTQAYLRGLREGNLWHVSIT 398
[Close]
BLAST of mRNA_L-elsbetiae_contig18033.5172.1 vs. uniprot
Match: A0A835YLX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX3_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.670e-40
Identity = 60/100 (60.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:   19 QEVVSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHARPYLRKSILAPEDQYDPFLVRWQSFFAPVFMMLFPGATLGQTQAYLRGLREGNLWHV 318
            QE +SR CNAWTLW+H +W++HHVYGHHSFTGDP RDPDL+HARP++RKS+L+P  +Y  + V WQ   AP FM + PG +LGQT +Y RG  +G++W V
Sbjct:  192 QEALSRCCNAWTLWNHAMWMLHHVYGHHSFTGDPTRDPDLIHARPFIRKSLLSPLHEYFRWFVDWQHVVAPGFMCVIPGQSLGQTISYARGAAQGHVWRV 291
[Close]
BLAST of mRNA_L-elsbetiae_contig18033.5172.1 vs. uniprot
Match: A0A0G4FKE0_9ALVE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FKE0_9ALVE)

HSP 1 Score: 85.9 bits (211), Expect = 2.700e-17
Identity = 44/99 (44.44%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:    7 RPRVQEVVSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHARPYLRKSILAPEDQYDPFL---VRWQSFFAPVFMMLFPGATLGQTQAYLRGL 294
            +P V E++SR+CNA   W H +W  HHVYGHHSFTGD  +DPD  + RP+ RK    P+D    FL   +  Q   A + + +FPG   GQ   YL+ L
Sbjct:  270 KPWVNELLSRLCNASQSWFHHVWARHHVYGHHSFTGDVAKDPDTRYGRPFFRKH---PDDAEKKFLAVGLENQPASALIALAVFPGQFFGQGLLYLQAL 365
[Close]
BLAST of mRNA_L-elsbetiae_contig18033.5172.1 vs. uniprot
Match: A0A5K0U7T4_9VIRU (Cytochrome b5-like heme/steroid binding domain n=1 Tax=Yasminevirus sp. GU-2018 TaxID=2420051 RepID=A0A5K0U7T4_9VIRU)

HSP 1 Score: 79.7 bits (195), Expect = 3.670e-15
Identity = 37/105 (35.24%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:   13 RVQEVVSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHARPYLRKSILAPEDQYDPFLVRWQSFFAPVFMMLFPGATLGQTQAY-LRGLREGNLWHVSI 324
            ++  ++SR  N   LW H LW+MHHV  HHSFTGD   DPD++H RP+++K+       Y    + +  F   +  ++FPG  +GQ   Y L     G +W +  
Sbjct:  183 KINTLLSRTWNGIALWDHQLWLMHHVVRHHSFTGDDNWDPDVLHLRPFVQKTPYDKRSGYISTALNFPRFMTLLVSVVFPGLFVGQCVMYHLMWPLRGRIWRMEF 287
[Close]
BLAST of mRNA_L-elsbetiae_contig18033.5172.1 vs. uniprot
Match: A0A6C0KGR0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KGR0_9ZZZZ)

HSP 1 Score: 79.0 bits (193), Expect = 6.550e-15
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 1 
Query:   16 VQEVVSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHARPYLRKS--ILAPEDQYDPFLVRWQSFFAPVFMMLFPGATLGQTQAY-LRGLREGNLWHVSI 324
            +  ++SR+     LW+H LW  HH   HH +TGD E+DPD++++RP+LRKS  I   + ++   L+   SF   +F  ++PG  LGQT  Y +  +    LW + +
Sbjct:  158 INNILSRIIQGMCLWNHTLWSYHHCIRHHQYTGDIEKDPDMINSRPFLRKSKQIRPRKSEFTKILL---SFKTVLFNTIYPGTALGQTIMYHVYWINYRKLWKMDL 260
[Close]
BLAST of mRNA_L-elsbetiae_contig18033.5172.1 vs. uniprot
Match: L8H5B9_ACACA (Fatty acid desaturase subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H5B9_ACACA)

HSP 1 Score: 70.1 bits (170), Expect = 9.210e-12
Identity = 36/95 (37.89%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:    4 QRPRVQEVVSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHARPYLRKSILAPEDQYDPFLVRWQSFFAPVFMMLFPGATLGQTQAYLR 288
            + P V  V+  + + W LW H LW+ HH YGHHS+TG   RDPDLV+ + + RK   +P  Q       W ++   V +   P   +GQ+  YLR
Sbjct:  183 KNPLVNRVLHTLWSDWNLWSHFLWLRHHTYGHHSYTGVYRRDPDLVNGQVFFRKHSESPF-QAQHTQQWWVTY---VLLWFLPNQHVGQSLLYLR 273
[Close]
BLAST of mRNA_L-elsbetiae_contig18033.5172.1 vs. uniprot
Match: A0A0V0QTF1_PSEPJ (Cytochrome b5-like heme/steroid binding domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QTF1_PSEPJ)

HSP 1 Score: 68.6 bits (166), Expect = 3.140e-11
Identity = 32/101 (31.68%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:   22 EVVSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHARPYLRKSILAPEDQYDPFLVRWQSFFAPVFMMLFPGATLGQTQAYLRGLR-EGNLWHVS 321
            +V +R+  A+ L+   LW+ HH + HH++TGD   DPD+++ +P++RK    P  +Y  +  +       + M L PG  +GQ   Y    R +G +W +S
Sbjct:  185 DVFTRIVGAFLLFRPELWMTHHSFRHHAYTGDENLDPDIINYQPFIRKVDRVPAKKYMKYTNKILGLVTCITMWLLPGQGVGQALIYEFTWRIQGRIWRMS 285
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18033.5172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G7E3_ECTSI3.600e-7089.81FA_desaturase domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KKY7_9PHAE4.290e-6790.74Cytochrome b5 heme-binding domain-containing prote... [more]
A0A835YLX3_9STRA1.670e-4060.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4FKE0_9ALVE2.700e-1744.44Cytochrome b5 heme-binding domain-containing prote... [more]
A0A5K0U7T4_9VIRU3.670e-1535.24Cytochrome b5-like heme/steroid binding domain n=1... [more]
A0A6C0KGR0_9ZZZZ6.550e-1535.85Uncharacterized protein n=1 Tax=viral metagenome T... [more]
L8H5B9_ACACA9.210e-1237.89Fatty acid desaturase subfamily protein n=1 Tax=Ac... [more]
A0A0V0QTF1_PSEPJ3.140e-1131.68Cytochrome b5-like heme/steroid binding domain n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18033contigL-elsbetiae_contig18033:64..2819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size330
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18033.5172.1prot_L-elsbetiae_contig18033.5172.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18033 64..2819 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.0302188-CDS-L-elsbetiae_contig18033:63..1841622815752.0302188-CDS-L-elsbetiae_contig18033:63..184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18033 64..184 -
1691683079.6943972-CDS-L-elsbetiae_contig18033:63..1841691683079.6943972-CDS-L-elsbetiae_contig18033:63..184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18033 64..184 -
1622815752.0415075-CDS-L-elsbetiae_contig18033:1896..19931622815752.0415075-CDS-L-elsbetiae_contig18033:1896..1993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18033 1897..1993 -
1691683079.711536-CDS-L-elsbetiae_contig18033:1896..19931691683079.711536-CDS-L-elsbetiae_contig18033:1896..1993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18033 1897..1993 -
1622815752.0526664-CDS-L-elsbetiae_contig18033:2707..28191622815752.0526664-CDS-L-elsbetiae_contig18033:2707..2819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18033 2708..2819 -
1691683079.7191682-CDS-L-elsbetiae_contig18033:2707..28191691683079.7191682-CDS-L-elsbetiae_contig18033:2707..2819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18033 2708..2819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18033.5172.1

>prot_L-elsbetiae_contig18033.5172.1 ID=prot_L-elsbetiae_contig18033.5172.1|Name=mRNA_L-elsbetiae_contig18033.5172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MQRPRVQEVVSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHAR
PYLRKSILAPEDQYDPFLVRWQSFFAPVFMMLFPGATLGQTQAYLRGLRE
GNLWHVSIT*
back to top

mRNA from alignment at L-elsbetiae_contig18033:64..2819-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18033.5172.1 ID=mRNA_L-elsbetiae_contig18033.5172.1|Name=mRNA_L-elsbetiae_contig18033.5172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2756bp|location=Sequence derived from alignment at L-elsbetiae_contig18033:64..2819- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGAGGCCGCGAGTACAGGAGGTGGTGTCGCGAGTCTGCAACGCGTG
GACGCTCTGGCATCACGGGCTTTGGGTCATGCACCATGTGTACGGCCACC
ACTCCTTCACCGGTCCGTCGCTTTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGATGATTGTGATGACAACGATGATGGCGATGAGGTTGATGATGAT
GGTGATGATGGTGATGTGGTGATATTAGTGATGATGATGATGTTGATGAT
GATGATGATGATGATGGTGATGTGGTGATTGCTGATGATGGTGATGTGAT
GATAATAGTGATTGCGATGATGGTGATGGATCGTGATGTTGGTGATGATG
GTGCTGACAGTGATAATAATGGCAATAGCGAGGAGAATGATGACGCTGGT
ACTGTCGTGTTGTTGCGTTCCCAAATTCCGAACGCTTGGCCAACTGAAAA
TATTACCCGCGGAGACTTTTGGTCGTCGTGGAACACTCCTATGTGACCCC
GGTTGGGTCGTCTAACTAGAGTAGAAGTGGAGGATGGGACAGACAAAAAA
AAAAAAAACTTTTGAAAGAAAAATCAGTCAAATAGATAGTCAAGAACGGC
TCGATTTGTTATTGCTTCCGCGGCGAGAAAAAGCAGTCATATCTCCACAC
GCCATGAAGCCGGAGTTGGTTTTTATTCCGGTTTATGTTTCCCCCTTTGT
CCCGGGACCGCCGTGCTTTTTCATTGACGCCATGCCCCCCCTGATCCCCC
CCCCCCCCCCCCCACTACCCGCACCCGTCCGACACGTCGCCCCCTGTTTC
TTTCCTTCATAAATTTACATCAACAGGAGACCCCGAGCGAGACCCGGACC
TGGTCCACGCTCGGCCTTATCTGAGGAAGAGCATCCTAGCCCCGGAAGAC
CAGTATGACCCGTTTCTAGTGAGGTGAGAGACGACGCCTATCGTAAGAGA
CGACGCGTGTCGTAGGAGACGACGCGTGTCGTAGGAGACGACACGTATCG
TAAGAGACGACGCGTTTCGTAGGAGACAGCACGTATCGTAAGAGACGACG
CGTGTCGTAGGAGACGACACGTATCGTAAGAGACGACGCGTGTCGTGGGA
GACGGCACGTATCATAAGAGACGACGCGTGTCGTAAGAGACGACGCGTGT
CGTAAGAGACGCGTGGTGCGCAAATGTACATGTACGTGTGTAATGGGCGG
AGAAAACACGGAGTCAGGCGAGAGACCGATACCGTAGGTGCCACAAGGTA
CCACACCCCCTGGACCGACTTTTAGAGCTCCATTTCTCCGTAACGAAGAG
GGTGCCAGCACCAAACAATACCTTTTCGGACAGCCCTCGACTAGATATTT
CTAACGCCACCCCTTTCGGCACTGACACTCTTCTTTCTGGGGAGGAATCG
AGCTTTGAAAATCCGTCCAGGGGGTGTGGTATCCTGTGTCACGTACGGTA
CACATGTATGTACGTACATATGGTAGTTTTTGTTCACGTTTTTTGTCACG
TGAGAAGTATCATAGGAGAACGACACGTATCGTAGGAGACGTGTGTGGGT
GTGTGGGTGTGTGTGTGTGTGTTTGTGTGTGTCTTGATATTAAAAACCGT
TCCGATCTCTCTATCCAGCACACCTCCATGAAGTCCGTACTGACCCAACA
CTGACGCGGTCGATTCCCGTGGTCACAGGATAACTTGCCCTAAAAAAGTC
GTATGTTACACAAATACATAACACGTACGTGTGTAGTGTGCGGAGAGGGA
CACGGAGTCGGCGGAGAGACAGACACATACACTTTGTACACGCTTGCTGG
TCAGGCGAGAAGAGACGGATGTAGAGACGCACGTACTTGTGTGCTGGAGG
GGGTCCAACCCCCCCCCTCCTGTGTGACCCCGGTTGGGTCGTCTAGCCAG
TCGTGGTGGAGGAAGGGGGCCAGTGGGGCAGACGACGAATATGCCAGTGG
TGGGCAAAAAAAAAAAAAAAAAAAACAATGTGCGAAGATGACCCCGGTTG
GTTCTAGCTGTACAGACAAATGCACTGCAAAGTGTAGTACCTCTACGTAC
ACCGCAAAGGTGTGGTACACGTCTCCACTTGGGGGGACTGTCGCCAAAAT
AAATGGGAAGGACACACACACACACACACACACACACACACACAGAGAGA
GAGATGCACGGAGGTGCGCGCGGGAGAGACGCAATGAAAACACATTTTTT
TTCTGCAAGGCGAGGGGCGTAGACGCATATTTTGGGGAGCACACACGCGC
GAGAAGAGATTTGACCTGGCAGAGATGCAGGGGAGATGGTAAAATCTTAT
TCTTATTTTCTACTCGGCCGGCCCAATTATGACGTCACTACATGGAATAC
CGACTGAATCTCACGGAGTCCCGTCTCAATGTGGGTTAGGTTCCATTTAA
AAAAATAAACAATGAATCGAAGAAAAAAAGGATGGGGGATTGTTGTGCCT
TCGCCTTACTTTCCCACTCCGTATTTTCTACCCCCCCCCCCCCCCCCCCT
CCGCCCCTTNNNNNNNNNNAACAAAGTGCAACAATCACAAAAGAGGGTTG
GGGACTTGTTGGTACTTGCCCTTTCTTTCCCCCCCCGTTTTTTCCCCCCC
CCCCCCCCCCCCGCCGGCGCTTTTTGCTGCTGCAGATGGCAAAGCTTCTT
CGCCCCCGTTTTCATGATGTTGTTCCCGGGTGCCACGCTGGGTCAGACCC
AGGCGTACCTGAGGGGCCTGAGAGAGGGGAACCTCTGGCACGTCTCCATC
ACGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18033:64..2819-

>mRNA_L-elsbetiae_contig18033.5172.1 ID=mRNA_L-elsbetiae_contig18033.5172.1|Name=mRNA_L-elsbetiae_contig18033.5172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig18033:64..2819- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGAGGCCGCGAGTACAGGAGGTGGTGTCGCGAGTCTGCAACGCGTG
GACGCTCTGGCATCACGGGCTTTGGGTCATGCACCATGTGTACGGCCACC
ACTCCTTCACCGATGCAGAGGCCGCGAGTACAGGAGGTGGTGTCGCGAGT
CTGCAACGCGTGGACGCTCTGGCATCACGGGCTTTGGGTCATGCACCATG
TGTACGGCCACCACTCCTTCACCGGAGACCCCGAGCGAGACCCGGACCTG
GTCCACGCTCGGCCTTATCTGAGGAAGAGCATCCTAGCCCCGGAAGACCA
GTATGACCCGTTTCTAGTGAGGAGACCCCGAGCGAGACCCGGACCTGGTC
CACGCTCGGCCTTATCTGAGGAAGAGCATCCTAGCCCCGGAAGACCAGTA
TGACCCGTTTCTAGTGAGATGGCAAAGCTTCTTCGCCCCCGTTTTCATGA
TGTTGTTCCCGGGTGCCACGCTGGGTCAGACCCAGGCGTACCTGAGGGGC
CTGAGAGAGGGGAACCTCTGGCACGTCTCCATCACGTGAATGGCAAAGCT
TCTTCGCCCCCGTTTTCATGATGTTGTTCCCGGGTGCCACGCTGGGTCAG
ACCCAGGCGTACCTGAGGGGCCTGAGAGAGGGGAACCTCTGGCACGTCTC
CATCACGTGA
back to top