mRNA_L-elsbetiae_contig18020.5170.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18020.5170.1
Unique NamemRNA_L-elsbetiae_contig18020.5170.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18020.5170.1 vs. uniprot
Match: A0A6H5JBQ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JBQ1_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.920e-44
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 1
Query:   28 GAPALRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYLFVTFILPLAAKLV 276
            GA  LRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAY+FV  ILPLAAKLV
Sbjct:  528 GARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYIFVKLILPLAAKLV 610          
BLAST of mRNA_L-elsbetiae_contig18020.5170.1 vs. uniprot
Match: A0A836CA52_9STRA (Phosphatidate cytidylyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA52_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.580e-34
Identity = 60/78 (76.92%), Postives = 69/78 (88.46%), Query Frame = 1
Query:   40 LRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYLFVTFILPLAAKL 273
            L WP W+ TG  YGAMLC++GLVGDLTAS+FKRDAGFKDSG++LPGHGGYLDRVDSYIFTAPPAYL++T  LPL  +L
Sbjct:  388 LSWPMWYLTGAIYGAMLCVIGLVGDLTASMFKRDAGFKDSGNILPGHGGYLDRVDSYIFTAPPAYLYITVALPLFRRL 465          
BLAST of mRNA_L-elsbetiae_contig18020.5170.1 vs. uniprot
Match: W7U3H9_9STRA (Phosphatidate cytidylyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3H9_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.220e-30
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   40 LRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYLFVTFILPLAAKL 273
            L WP WW +GPAYG ML ++ LVGDLTAS+FKRDAG KDSG LLPGHGG LDR+DS++FT P AYLFV  +LPLA ++
Sbjct:  333 LNWPLWWLSGPAYGLMLGVIALVGDLTASMFKRDAGLKDSGGLLPGHGGILDRIDSFMFTGPFAYLFVLVVLPLARRI 410          
BLAST of mRNA_L-elsbetiae_contig18020.5170.1 vs. uniprot
Match: A0A7S2KAI7_9STRA (Phosphatidate cytidylyltransferase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KAI7_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.790e-29
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   28 GAPALRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYLFVTFILP 258
            GA  L WP WWATGP +G  L L+GL+GDLTAS+ KRDAG KD G LLP HGG +DRVDSYIFTAP ++L +T +LP
Sbjct:   20 GAWVLNWPYWWATGPIHGLCLALLGLIGDLTASMLKRDAGLKDFGDLLPEHGGIMDRVDSYIFTAPYSWLVLTVVLP 96          
BLAST of mRNA_L-elsbetiae_contig18020.5170.1 vs. uniprot
Match: A0A482SP91_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP91_9ARCH)

HSP 1 Score: 109 bits (272), Expect = 7.780e-29
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   28 GAPALRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYLFVTFILPLAAKL 273
            GA  ++WP W ATG  YG ML ++ LVGDLTAS+ KRDA  KDSGSLLPGHGG LDR+DSY+FTAP A+ F   +LP A KL
Sbjct:   43 GAYVMQWPLWIATGTLYGIMLSVISLVGDLTASMMKRDAKMKDSGSLLPGHGGVLDRIDSYMFTAPAAFFFCRDVLPFALKL 124          
BLAST of mRNA_L-elsbetiae_contig18020.5170.1 vs. uniprot
Match: A0A7S2HB53_9STRA (Phosphatidate cytidylyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HB53_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.660e-28
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1
Query:   28 GAPALRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYLFVTFILPLAAK 270
            GA A++WP W  TGPA+G +L L  +VGDLTAS+FKRDAG KD G LLPGHGG LDR DSYI T P  Y F+++ILPL AK
Sbjct:  170 GAKAMQWPLWAITGPAFGVLLGLTAVVGDLTASMFKRDAGLKDYGDLLPGHGGVLDRFDSYILTGPLVYFFMSYILPLVAK 250          
BLAST of mRNA_L-elsbetiae_contig18020.5170.1 vs. uniprot
Match: A0A7S0VRI1_9CRYP (Phosphatidate cytidylyltransferase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VRI1_9CRYP)

HSP 1 Score: 114 bits (285), Expect = 4.160e-28
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query:   28 GAPALRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYLFVTFI 252
            GA  +RWP WW TGPAYG M+  +GL+GDLT S+FKRDAG KD+G+LLPGHGG LDRVDSY+ TA P Y FV FI
Sbjct:  354 GARLMRWPIWWFTGPAYGGMISSLGLLGDLTVSLFKRDAGVKDTGTLLPGHGGLLDRVDSYLLTAMPVYYFVKFI 428          
BLAST of mRNA_L-elsbetiae_contig18020.5170.1 vs. uniprot
Match: A0A0G4G1U8_9ALVE (Phosphatidate cytidylyltransferase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G1U8_9ALVE)

HSP 1 Score: 113 bits (283), Expect = 1.580e-27
Identity = 57/90 (63.33%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    1 LCVRVRACGGAPALRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYLFVTFILPLAAK 270
            LC  + +  GA  + WP W  +G  YG ML  V L+GDLTAS FKRDAG KDSG +LPGHGG LDRVDSY+FTAP AY FV FILPL +K
Sbjct:  408 LCSLLLSVLGAWLMAWPLWPISGSIYGVMLAYVSLLGDLTASTFKRDAGLKDSGKILPGHGGLLDRVDSYLFTAPSAYFFVVFILPLFSK 497          
BLAST of mRNA_L-elsbetiae_contig18020.5170.1 vs. uniprot
Match: K9F1F5_9CYAN (Phosphatidate cytidylyltransferase n=6 Tax=Leptolyngbyaceae TaxID=1890438 RepID=K9F1F5_9CYAN)

HSP 1 Score: 109 bits (273), Expect = 2.840e-27
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   22 CGGAPALRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYLFVTFILP 258
            C GA  ++WP WW TGPA+G M+ +  L+GDLT S+ KRDAG KDSG+L+PGHGG LDR DSY+FTAP  + F+T +LP
Sbjct:  205 CTGAWLMQWPLWWITGPAFGTMIGVSSLLGDLTESLMKRDAGVKDSGTLIPGHGGILDRTDSYVFTAPLVFYFITMLLP 283          
BLAST of mRNA_L-elsbetiae_contig18020.5170.1 vs. uniprot
Match: A0A7S0TS08_HEMAN (Phosphatidate cytidylyltransferase n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TS08_HEMAN)

HSP 1 Score: 112 bits (281), Expect = 3.210e-27
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 1
Query:   28 GAPALRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYLFVTFI 252
            GA  +RWP WW TGPAYG M+  +GL+GDLT S+FKRDAG KD+G++LPGHGG LDRVDSY+ TA P Y FV FI
Sbjct:  448 GARLMRWPIWWLTGPAYGFMISSLGLLGDLTVSLFKRDAGVKDTGNVLPGHGGLLDRVDSYLLTAMPVYYFVKFI 522          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18020.5170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBQ1_9PHAE1.920e-4493.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CA52_9STRA1.580e-3476.92Phosphatidate cytidylyltransferase n=1 Tax=Tribone... [more]
W7U3H9_9STRA6.220e-3069.23Phosphatidate cytidylyltransferase n=2 Tax=Monodop... [more]
A0A7S2KAI7_9STRA4.790e-2966.23Phosphatidate cytidylyltransferase (Fragment) n=1 ... [more]
A0A482SP91_9ARCH7.780e-2964.63Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2HB53_9STRA1.660e-2865.43Phosphatidate cytidylyltransferase n=1 Tax=Dictyoc... [more]
A0A7S0VRI1_9CRYP4.160e-2869.33Phosphatidate cytidylyltransferase n=1 Tax=Hemisel... [more]
A0A0G4G1U8_9ALVE1.580e-2763.33Phosphatidate cytidylyltransferase n=1 Tax=Chromer... [more]
K9F1F5_9CYAN2.840e-2760.76Phosphatidate cytidylyltransferase n=6 Tax=Leptoly... [more]
A0A7S0TS08_HEMAN3.210e-2768.00Phosphatidate cytidylyltransferase n=3 Tax=Hemisel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18020contigL-elsbetiae_contig18020:398..673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue4.1e-38
Seed eggNOG ortholog2880.D7FLN3
KEGG rclassRC00002,RC00055,RC00523
KEGG koko:K00981,ko:K14163
KEGG ReactionR01799,R03661,R05578
KEGG Pathwayko00564,ko00860,ko00970,ko01100,ko01110,ko01120,ko04070,map00564,map00860,map00970,map01100,map01110,map01120,map04070
KEGG ModuleM00093,M00121,M00359
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0034654,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055035,GO:0055086,GO:0070567,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.phosphatidate cytidylyltransferase activity
EggNOG OGsCOG0575@1,KOG1440@2759
EC2.7.7.41,6.1.1.15,6.1.1.17
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.9335215-CDS-L-elsbetiae_contig18020:397..6731622815751.9335215-CDS-L-elsbetiae_contig18020:397..673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18020 398..673 +
1691683079.659303-CDS-L-elsbetiae_contig18020:397..6731691683079.659303-CDS-L-elsbetiae_contig18020:397..673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18020 398..673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18020.5170.1prot_L-elsbetiae_contig18020.5170.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18020 398..673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18020.5170.1

>prot_L-elsbetiae_contig18020.5170.1 ID=prot_L-elsbetiae_contig18020.5170.1|Name=mRNA_L-elsbetiae_contig18020.5170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
LCVRVRACGGAPALRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGF
KDSGSLLPGHGGYLDRVDSYIFTAPPAYLFVTFILPLAAKLV
back to top

mRNA from alignment at L-elsbetiae_contig18020:398..673+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18020.5170.1 ID=mRNA_L-elsbetiae_contig18020.5170.1|Name=mRNA_L-elsbetiae_contig18020.5170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=276bp|location=Sequence derived from alignment at L-elsbetiae_contig18020:398..673+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTGTGTACGCGTGCGTGCGTGTGGCGGCGCCCCTGCACTCAGGTGGCC GGCGTGGTGGGCCACGGGACCGGCGTACGGCGCCATGCTCTGCCTCGTGG GTCTGGTGGGGGACCTGACCGCGTCGGTCTTCAAGCGCGACGCCGGGTTC AAGGACTCGGGGAGCCTGCTGCCCGGGCACGGGGGCTACCTGGACCGCGT CGACAGCTACATCTTCACGGCGCCCCCGGCGTACCTCTTCGTCACGTTCA TCCTCCCGCTGGCCGCCAAGCTCGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18020:398..673+

>mRNA_L-elsbetiae_contig18020.5170.1 ID=mRNA_L-elsbetiae_contig18020.5170.1|Name=mRNA_L-elsbetiae_contig18020.5170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig18020:398..673+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTGTGTACGCGTGCGTGCGTGTGGCGGCGCCCCTGCACTCAGGTGGCC
GGCGTGGTGGGCCACGGGACCGGCGTACGGCGCCATGCTCTGCCTCGTGG
GTCTGGTGGGGGACCTGACCGCGTCGGTCTTCAAGCGCGACGCCGGGTTC
AAGGACTCGGGGAGCCTGCTGCCCGGGCACGGGGGCTACCTGGACCGCGT
CGACAGCTACATCTTCACGGCGCCCCCGGCGTACCTCTTCGTCACGTTCA
TCCTCCCGCTGGCCGCCAAGCTCGTGCTCTGTGTACGCGTGCGTGCGTGT
GGCGGCGCCCCTGCACTCAGGTGGCCGGCGTGGTGGGCCACGGGACCGGC
GTACGGCGCCATGCTCTGCCTCGTGGGTCTGGTGGGGGACCTGACCGCGT
CGGTCTTCAAGCGCGACGCCGGGTTCAAGGACTCGGGGAGCCTGCTGCCC
GGGCACGGGGGCTACCTGGACCGCGTCGACAGCTACATCTTCACGGCGCC
CCCGGCGTACCTCTTCGTCACGTTCATCCTCCCGCTGGCCGCCAAGCTCG
TG
back to top