mRNA_L-elsbetiae_contig18014.5167.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18014.5167.1
Unique NamemRNA_L-elsbetiae_contig18014.5167.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18014.5167.1 vs. uniprot
Match: D8LC16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC16_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 7.590e-61
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    7 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIRNPKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE 276
            AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHI+NPKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE
Sbjct:    7 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIQNPKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE 96
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BLAST of mRNA_L-elsbetiae_contig18014.5167.1 vs. uniprot
Match: A0A6H5JHQ4_9PHAE (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ4_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 6.050e-58
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    7 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIRNPKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE 276
            AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHI+NPKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE
Sbjct:  173 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIQNPKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE 262
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BLAST of mRNA_L-elsbetiae_contig18014.5167.1 vs. uniprot
Match: A0A835Z290_9STRA (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z290_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.380e-43
Identity = 68/91 (74.73%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    4 QAVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIRNPKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE 276
            QAVE  Q+ +  + +DG  W ELAYCYLM+N+LQNSYT+YQHALYHI+NPK+A LWYGIGLLY+ YGSY HAIEAFDACLKMDPNFEL+HE
Sbjct:   40 QAVELYQRVIEANPEDGAAWAELAYCYLMLNELQNSYTSYQHALYHIKNPKNAHLWYGIGLLYNRYGSYSHAIEAFDACLKMDPNFELEHE 130
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BLAST of mRNA_L-elsbetiae_contig18014.5167.1 vs. uniprot
Match: UPI000644BA6A (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644BA6A)

HSP 1 Score: 125 bits (315), Expect = 1.290e-31
Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    1 QQAVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIRNPKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE 276
            Q+A +Y Q+ V  D+K+G  W  L +CYLM++DL  +YTAYQHALYH+ NPKD +LWYGIG+LYD YGSY HA EAF A LKM  NFE ++E
Sbjct:   87 QKASDYFQRVVTIDNKNGEAWGHLGHCYLMMDDLHKAYTAYQHALYHLPNPKDPKLWYGIGILYDRYGSYEHAEEAFTAVLKMSSNFEKNNE 178
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BLAST of mRNA_L-elsbetiae_contig18014.5167.1 vs. uniprot
Match: A0A6B2KZV5_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KZV5_9EUKA)

HSP 1 Score: 122 bits (306), Expect = 1.650e-30
Identity = 53/91 (58.24%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    4 QAVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIRNPKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE 276
            +A+EY Q+A+  +  +G  W  L +C+LMI DLQ +YTAYQ ALYH+ NP+D  LWYGIG+LYD YGS+ HA E+F+A LKMDPNFE  +E
Sbjct:   69 EAIEYFQKALTIESSNGEVWGALGHCFLMIEDLQKAYTAYQQALYHLPNPRDPNLWYGIGILYDRYGSFEHAEESFNAVLKMDPNFEKRNE 159
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BLAST of mRNA_L-elsbetiae_contig18014.5167.1 vs. uniprot
Match: A0A168LF62_MUCCL (Uncharacterized protein n=1 Tax=Mucor lusitanicus CBS 277.49 TaxID=747725 RepID=A0A168LF62_MUCCL)

HSP 1 Score: 119 bits (299), Expect = 3.770e-30
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 QQAVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIRNPKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE 276
            ++AVEY ++ +A  D  G TW  L +CYLM ++LQ +Y AYQ ALYH++NPKDA+LWYGIG+LYD YGS  HA EAF A +KMDP FE   E
Sbjct:   68 ERAVEYFKRVLAIQDSHGDTWAALGHCYLMSDNLQEAYQAYQQALYHLQNPKDAKLWYGIGILYDRYGSLEHAEEAFSAVMKMDPQFEKASE 159
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BLAST of mRNA_L-elsbetiae_contig18014.5167.1 vs. uniprot
Match: I1CHR2_RHIO9 (Uncharacterized protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CHR2_RHIO9)

HSP 1 Score: 119 bits (299), Expect = 6.430e-30
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    7 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIRNPKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE 276
            AVEY ++ +A  + +G  W  L +CYLM+++LQ +Y AYQ ALYH++NPKD +LWYGIG+LYD YGS  HA EAF A +KMDPNFE  +E
Sbjct:   34 AVEYFKRILALQENNGEAWSALGHCYLMMDNLQEAYQAYQQALYHLQNPKDPKLWYGIGILYDRYGSIDHAEEAFSAVMKMDPNFEKANE 123
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BLAST of mRNA_L-elsbetiae_contig18014.5167.1 vs. uniprot
Match: UPI000644F0E8 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644F0E8)

HSP 1 Score: 120 bits (302), Expect = 7.320e-30
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    7 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIRNPKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE 276
            A E+ Q+ +  D+K+G  W +L  CYLM++DLQ +Y+AYQHALYH+ NPKD  LWYGIG+LYD YGSY HA EAF A LKMD  F+  +E
Sbjct:   72 AAEFFQRIITIDEKNGEAWGDLGNCYLMLDDLQKAYSAYQHALYHLPNPKDPNLWYGIGILYDRYGSYEHAEEAFTAVLKMDNKFDKANE 161
[Close]
BLAST of mRNA_L-elsbetiae_contig18014.5167.1 vs. uniprot
Match: A0A6B2L5V7_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L5V7_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 8.130e-30
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    4 QAVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIRNPKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE 276
            +A+EY Q+ ++ + K+G  W  L +CYLM  DLQ +Y AYQ ALY++ NPKDA LWYGIG+LYD YGS+ HA EAF+A LKMDPNFE  +E
Sbjct:   40 EAIEYFQRVLSIE-KNGEVWGALGHCYLMAEDLQQAYAAYQQALYYLPNPKDANLWYGIGILYDRYGSFEHAEEAFNAVLKMDPNFEKRNE 129
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BLAST of mRNA_L-elsbetiae_contig18014.5167.1 vs. uniprot
Match: A0A1X2GLR2_9FUNG (TPR-like protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GLR2_9FUNG)

HSP 1 Score: 118 bits (296), Expect = 9.480e-30
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    1 QQAVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIRNPKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE 276
            +QA++Y Q+ ++  ++DG TW  L +CYLM NDLQ +Y AYQ ALYH+ + KD +LWYGIG+LYD YGS  HA EAF A +KMDPNFE  +E
Sbjct:   65 EQAIDYFQRVLSLQNRDGDTWGALGHCYLMTNDLQQAYHAYQQALYHLPDVKDPKLWYGIGILYDRYGSLEHAEEAFVAAIKMDPNFEKINE 156
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18014.5167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC16_ECTSI7.590e-6198.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHQ4_9PHAE6.050e-5898.89Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
A0A835Z290_9STRA1.380e-4374.73Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
UPI000644BA6A1.290e-3160.87hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A6B2KZV5_9EUKA1.650e-3058.24Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A168LF62_MUCCL3.770e-3058.70Uncharacterized protein n=1 Tax=Mucor lusitanicus ... [more]
I1CHR2_RHIO96.430e-3057.78Uncharacterized protein n=1 Tax=Rhizopus delemar (... [more]
UPI000644F0E87.320e-3058.89hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A6B2L5V7_9EUKA8.130e-3059.34Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A1X2GLR2_9FUNG9.480e-3057.61TPR-like protein n=1 Tax=Hesseltinella vesiculosa ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18014contigL-elsbetiae_contig18014:1709..2719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.6
Seed ortholog evalue2.6e-48
Seed eggNOG ortholog2880.D8LC16
KEGG koko:K06665
KEGG Pathwayko04011,ko04111,map04011,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006323,GO:0006325,GO:0006333,GO:0006342,GO:0006355,GO:0006357,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016584,GO:0017053,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0034728,GO:0040029,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0080090,GO:0090568,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-20_004090.1
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.6844752-CDS-L-elsbetiae_contig18014:1708..18281622815751.6844752-CDS-L-elsbetiae_contig18014:1708..1828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18014 1709..1828 -
1691683079.4880307-CDS-L-elsbetiae_contig18014:1708..18281691683079.4880307-CDS-L-elsbetiae_contig18014:1708..1828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18014 1709..1828 -
1622815751.6942694-CDS-L-elsbetiae_contig18014:2563..27191622815751.6942694-CDS-L-elsbetiae_contig18014:2563..2719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18014 2564..2719 -
1691683079.5033398-CDS-L-elsbetiae_contig18014:2563..27191691683079.5033398-CDS-L-elsbetiae_contig18014:2563..2719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18014 2564..2719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18014.5167.1prot_L-elsbetiae_contig18014.5167.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18014 1709..2719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18014.5167.1

>prot_L-elsbetiae_contig18014.5167.1 ID=prot_L-elsbetiae_contig18014.5167.1|Name=mRNA_L-elsbetiae_contig18014.5167.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
QQAVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIRN
PKDARLWYGIGLLYDCYGSYGHAIEAFDACLKMDPNFELDHE
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mRNA from alignment at L-elsbetiae_contig18014:1709..2719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18014.5167.1 ID=mRNA_L-elsbetiae_contig18014.5167.1|Name=mRNA_L-elsbetiae_contig18014.5167.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1011bp|location=Sequence derived from alignment at L-elsbetiae_contig18014:1709..2719- (Laminarionema elsbetiae ELsaHSoW15)
CAACAGGCCGTGGAATACTTGCAGCAAGCAGTAGCGTTCGACGACAAGGA
CGGTCACACGTGGGAGGAGCTGGCCTACTGCTACCTGATGATCAACGACC
TTCAGAACTCGTACACGGCGTACCAACACGCCCTCTACCACATACGAAAC
CCGAAGGTGGGGTGTCGGCGGGGGGGGGAGGGCTCCGCGGGAGTAAGTAA
GAACAAAGGGGCCAGGTCGTGCGAGAGCTTAAAAGGAAGCCACACGCCTT
TTGTCATCCGTGTATAGAAGCATTCTCGGCGCACTTTTCGTGGCGCTTGT
CAGAAGAATCGCGACCAGGCTGCTGTTCTTGGTTGCCTTTGATGCGGTGG
TGATGCGCTCGCTGCTGCGAGGGAGTTAGCCGGCCCTCGTTCTCTCGTGT
TTGATGACGCTAGTTATGTATCCATGTACAAAGGAGTTGTAAACATGTAA
ATATGTTCTCCGCCTCGCTGCCTGTGTTGTCCGCCTTTCCGTGACTGCAA
TCTCTGATACCCCCTCGGTGCCTCGACGGGGCCTCTCGCCTGGTTCCAGC
AGTCAGAGAAGAGAGAGACACGGAATGTTGTTTTTGTCCTCTCTTTGGGT
TGTGCGTGTGTGTTCTGTTGATTTGTGCACCTGCTGTGCGCTGCTCAAAA
AGCCAGCTCTTTTCCGTGTGTCCTTTCTCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCTCGCCCCCCCGCCGCGCCCGCCCC
GCGCCGGCNNNNNNNNNNTTTTTTTGTTTTTTTCCCCTCCTGTGCGCCGC
TCAAAAAACCCGCCCTTTTCCCTGTGTCCTTTCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCACGTCATTCTGGCATGGCCGCTGCGCAGGACGCGCGC
TTGTGGTACGGCATTGGGCTCTTGTACGACTGCTACGGGAGCTACGGCCA
CGCGATCGAAGCGTTCGACGCGTGCCTGAAGATGGACCCCAACTTCGAAC
TGGACCATGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18014:1709..2719-

>mRNA_L-elsbetiae_contig18014.5167.1 ID=mRNA_L-elsbetiae_contig18014.5167.1|Name=mRNA_L-elsbetiae_contig18014.5167.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig18014:1709..2719- (Laminarionema elsbetiae ELsaHSoW15)
CAACAGGCCGTGGAATACTTGCAGCAAGCAGTAGCGTTCGACGACAAGGA
CGGTCACACGTGGGAGGAGCTGGCCTACTGCTACCTGATGATCAACGACC
TTCAGAACTCGTACACGGCGTACCAACACGCCCTCTACCACATACGAAAC
CCGAAGCAACAGGCCGTGGAATACTTGCAGCAAGCAGTAGCGTTCGACGA
CAAGGACGGTCACACGTGGGAGGAGCTGGCCTACTGCTACCTGATGATCA
ACGACCTTCAGAACTCGTACACGGCGTACCAACACGCCCTCTACCACATA
CGAAACCCGAAGGACGCGCGCTTGTGGTACGGCATTGGGCTCTTGTACGA
CTGCTACGGGAGCTACGGCCACGCGATCGAAGCGTTCGACGCGTGCCTGA
AGATGGACCCCAACTTCGAACTGGACCATGAGGACGCGCGCTTGTGGTAC
GGCATTGGGCTCTTGTACGACTGCTACGGGAGCTACGGCCACGCGATCGA
AGCGTTCGACGCGTGCCTGAAGATGGACCCCAACTTCGAACTGGACCATG
AG
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