mRNA_L-elsbetiae_contig180.5159.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig180.5159.1
Unique NamemRNA_L-elsbetiae_contig180.5159.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig180.5159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig180contigL-elsbetiae_contig180:19429..19766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815750.608733-CDS-L-elsbetiae_contig180:19428..197641622815750.608733-CDS-L-elsbetiae_contig180:19428..19764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig180 19429..19764 +
1691683078.7141929-CDS-L-elsbetiae_contig180:19428..197641691683078.7141929-CDS-L-elsbetiae_contig180:19428..19764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig180 19429..19764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig180.5159.1prot_L-elsbetiae_contig180.5159.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig180 19429..19764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig180.5159.1

>prot_L-elsbetiae_contig180.5159.1 ID=prot_L-elsbetiae_contig180.5159.1|Name=mRNA_L-elsbetiae_contig180.5159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
PAPRPLPPAPSLPALATPPATMETAAPAPRLSLRRSNAPRLPPPLPSAPA
GVVPRQSFAKRNDRAPSGAEAKRRRTSERKTSGEEEEEGNRTPGADVDMS
SAREFGRRRRLP
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mRNA from alignment at L-elsbetiae_contig180:19429..19766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig180.5159.1 ID=mRNA_L-elsbetiae_contig180.5159.1|Name=mRNA_L-elsbetiae_contig180.5159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=338bp|location=Sequence derived from alignment at L-elsbetiae_contig180:19429..19766+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGCCCCACGGCCGCTACCGCCGGCCCCGTCCCTTCCCGCCTTGGCCAC
GCCGCCGGCAACGATGGAGACGGCGGCACCTGCCCCGCGACTCTCCCTTC
GCCGAAGCAATGCTCCGCGGCTACCGCCGCCCCTGCCGAGCGCGCCGGCA
GGCGTGGTGCCGCGGCAGTCATTCGCCAAGAGGAACGACCGGGCGCCATC
AGGCGCCGAGGCAAAGAGGAGGAGGACGAGTGAGAGGAAGACTAGCGGCG
AAGAGGAGGAGGAGGGCAACCGCACCCCGGGGGCAGACGTCGACATGTCG
TCGGCGCGTGAGTTTGGGCGGCGGCGGCGGCTGCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig180:19429..19766+

>mRNA_L-elsbetiae_contig180.5159.1 ID=mRNA_L-elsbetiae_contig180.5159.1|Name=mRNA_L-elsbetiae_contig180.5159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig180:19429..19766+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGCCCCACGGCCGCTACCGCCGGCCCCGTCCCTTCCCGCCTTGGCCAC
GCCGCCGGCAACGATGGAGACGGCGGCACCTGCCCCGCGACTCTCCCTTC
GCCGAAGCAATGCTCCGCGGCTACCGCCGCCCCTGCCGAGCGCGCCGGCA
GGCGTGGTGCCGCGGCAGTCATTCGCCAAGAGGAACGACCGGGCGCCATC
AGGCGCCGAGGCAAAGAGGAGGAGGACGAGTGAGAGGAAGACTAGCGGCG
AAGAGGAGGAGGAGGGCAACCGCACCCCGGGGGCAGACGTCGACATGTCG
TCGGCGCGTGAGTTTGGGCGGCGGCGGCGGCTGCCGCCCGCCCCACGGCC
GCTACCGCCGGCCCCGTCCCTTCCCGCCTTGGCCACGCCGCCGGCAACGA
TGGAGACGGCGGCACCTGCCCCGCGACTCTCCCTTCGCCGAAGCAATGCT
CCGCGGCTACCGCCGCCCCTGCCGAGCGCGCCGGCAGGCGTGGTGCCGCG
GCAGTCATTCGCCAAGAGGAACGACCGGGCGCCATCAGGCGCCGAGGCAA
AGAGGAGGAGGACGAGTGAGAGGAAGACTAGCGGCGAAGAGGAGGAGGAG
GGCAACCGCACCCCGGGGGCAGACGTCGACATGTCGTCGGCGCGTGAGTT
TGGGCGGCGGCGGCGGCTGCCG
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