mRNA_L-elsbetiae_contig18.5151.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18.5151.1
Unique NamemRNA_L-elsbetiae_contig18.5151.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18.5151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18contigL-elsbetiae_contig18:13998..15660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size352
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18.5151.1prot_L-elsbetiae_contig18.5151.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18 14000..15660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.9351134-CDS-L-elsbetiae_contig18:13999..140281622815749.9351134-CDS-L-elsbetiae_contig18:13999..14028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18 14000..14028 -
1691683078.30699-CDS-L-elsbetiae_contig18:13999..140281691683078.30699-CDS-L-elsbetiae_contig18:13999..14028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18 14000..14028 -
1622815749.9474845-CDS-L-elsbetiae_contig18:14358..145951622815749.9474845-CDS-L-elsbetiae_contig18:14358..14595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18 14359..14595 -
1691683078.3247926-CDS-L-elsbetiae_contig18:14358..145951691683078.3247926-CDS-L-elsbetiae_contig18:14358..14595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18 14359..14595 -
1622815749.9632475-CDS-L-elsbetiae_contig18:15578..156601622815749.9632475-CDS-L-elsbetiae_contig18:15578..15660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18 15579..15660 -
1691683078.3378735-CDS-L-elsbetiae_contig18:15578..156601691683078.3378735-CDS-L-elsbetiae_contig18:15578..15660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18 15579..15660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18.5151.1

>prot_L-elsbetiae_contig18.5151.1 ID=prot_L-elsbetiae_contig18.5151.1|Name=mRNA_L-elsbetiae_contig18.5151.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
EACCGSGIISSGRICSAETGAPCIVADDEIVTPEPTVTPTSTMTSPPVPT
PAPVDTPGNFDEIESYLVTPPTRIMTIPDDPSGCTTTTTPKFRFAASSGL
VGRGRLYAESPGCFTM
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mRNA from alignment at L-elsbetiae_contig18:13998..15660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18.5151.1 ID=mRNA_L-elsbetiae_contig18.5151.1|Name=mRNA_L-elsbetiae_contig18.5151.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1663bp|location=Sequence derived from alignment at L-elsbetiae_contig18:13998..15660- (Laminarionema elsbetiae ELsaHSoW15)
GAGGCCTGCTGTGGCTCGGGCATCATATCTTCGGGGCGCATTTGCTCCGC
CGAGACTGGAGCACCGTGTATCGTGGCAGATGGTAAGCGCGTGGAGTGAG
GTCAACGACTATAGAGAAAACGCTTGTCAACAGGATTTCCAACTTCGTAC
CGTCCGGCTTCGGGGCTGATTCTCCAACAGTTTCCCTACATTCGGCCCAG
TGCATTCTCACAAAGTGCACCAGGTACAAGAATGCTCGATCATCTGTTAA
CTAAAATTTGTAGCTCGAACCGAAGTTTGGGATAAAATATCAACCAGAGC
CCCCCGTCAGTTGCGATGCGAGTTGAAGGCCTCGCGCTGTGAGCAGAAAC
AGCCTTCATGGATGATATCAACCGCTCCTGACATTGGTCCGGCCAAGTAG
AAAAACACCTAAAATGAAAACAAAATAGTCTATTATAAAGCCTCCCCTTT
TGTATCCATACCTCTGCCAGGCCAACTAGCAAATGTTCCCGGGAGAAGCC
CTCCGTAACATGGTGGTCGTGTTTTCTTTCTATTCATGATATATATGCTC
TAGGAATACATTGCAGTGTCTGACTTTAGTGCCGGTTTGACAAGTATATC
TTCATAGTAGTAGTCTATGTGTGCAGCAGTTGTGGAGGGATTTTCAGTTT
TCTTTTTGTGTGTAACAAAGCACCCAAACGCGGAAAAACATCCTGGCTCT
TACGAATAGCGATATCGCCCCGGCAGAGTCGTTCATTTCTTGTTGCACCG
TGTCGGGAAGAGGAAATAAATGCTGGTCCGGGAGTATTGAAGCGGAAACA
CGCCGAGATCTTGCGAACGTTGGATGCTCACAGGAGAAACACTGTACGCT
TGCTCTGGGCACGCTACATAATAGTGCAATGCACTTCCACGCTGTCCTTT
GAATATCTAGGCTGTGTATCTATCTATGCTCGTCGATCGGTTTGCTTACT
GCAACAACACTCCACCCCACCCGAAGTATATCGCGACGTCGTCTGTTCCT
CTCGATGTTGCTCTGACACTCTTTTGCCATTGTTTGTTGCCGTCGCACTT
CCTTGGGCCTTACAGATGAGATCGTCACCCCCGAGCCCACTGTGACCCCT
ACGTCAACCATGACTTCGCCTCCCGTGCCTACCCCCGCACCCGTGGACAC
CCCCGGGAACTTCGACGAGATTGAATCCTACCTGGTCACACCTCCGACTA
GAATCATGACGATCCCAGACGACCCGTCGGGGTGCACCACAACTACAACC
CCTAAGTTCCGTTTTGCTGCAAGCAGCGGGTTGGTCGGCAGGGGCCGTCT
CTGTGAGTGGAACTCGTCAGCCCAGGCGAGGTGTTTGCGGCTATGTTTGG
GGGTACTTACTTGGCCGTTGCGGAACAATATTGAGAGAATGACGAACTAG
GCCGACTGCAGGCCGGTGCGATGCATCGGGTGTCGCTGAATCGCGGCAAA
GTATACTACATGTGGCAAACGTATGCGATGCCTTATCGGGAGGTGGCTGG
TGGGGGGTCAATACTGGAAATTTATAAACTGATCCGCCTCCTTTTGCCCC
TTCCACCTGGCTGTGCGCGTATCTTCGGCACAAATTTCCCTCTCTCGCGA
TACACACCCCTGGATCTCGCACCGGGTCGCAGACGCGGAGAGCCCCGGCT
GCTTTACGATGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18:13998..15660-

>mRNA_L-elsbetiae_contig18.5151.1 ID=mRNA_L-elsbetiae_contig18.5151.1|Name=mRNA_L-elsbetiae_contig18.5151.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig18:13998..15660- (Laminarionema elsbetiae ELsaHSoW15)
GAGGCCTGCTGTGGCTCGGGCATCATATCTTCGGGGCGCATTTGCTCCGC
CGAGACTGGAGCACCGTGTATCGTGGCAGATGGAGGCCTGCTGTGGCTCG
GGCATCATATCTTCGGGGCGCATTTGCTCCGCCGAGACTGGAGCACCGTG
TATCGTGGCAGATGATGAGATCGTCACCCCCGAGCCCACTGTGACCCCTA
CGTCAACCATGACTTCGCCTCCCGTGCCTACCCCCGCACCCGTGGACACC
CCCGGGAACTTCGACGAGATTGAATCCTACCTGGTCACACCTCCGACTAG
AATCATGACGATCCCAGACGACCCGTCGGGGTGCACCACAACTACAACCC
CTAAGTTCCGTTTTGCTGCAAGCAGCGGGTTGGTCGGCAGGGGCCGTCTC
TATGAGATCGTCACCCCCGAGCCCACTGTGACCCCTACGTCAACCATGAC
TTCGCCTCCCGTGCCTACCCCCGCACCCGTGGACACCCCCGGGAACTTCG
ACGAGATTGAATCCTACCTGGTCACACCTCCGACTAGAATCATGACGATC
CCAGACGACCCGTCGGGGTGCACCACAACTACAACCCCTAAGTTCCGTTT
TGCTGCAAGCAGCGGGTTGGTCGGCAGGGGCCGTCTCTACGCGGAGAGCC
CCGGCTGCTTTACGATGACGCGGAGAGCCCCGGCTGCTTTACGATG
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