mRNA_L-elsbetiae_contig17991.5149.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17991.5149.1
Unique NamemRNA_L-elsbetiae_contig17991.5149.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17991.5149.1 vs. uniprot
Match: D7G985_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G985_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 8.280e-6
Identity = 21/35 (60.00%), Postives = 24/35 (68.57%), Query Frame = 2 
Query:    5 KRCAHRGCSKHPTYGVQGSKAREFCADHKMEDMVN 109
            KRC H GC K P+YG  GSK REFCA H  + MV+
Sbjct:    7 KRCGHLGCMKRPSYGTDGSKKREFCAQHSQQGMVS 41
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BLAST of mRNA_L-elsbetiae_contig17991.5149.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 2.440e-5
Identity = 20/35 (57.14%), Postives = 24/35 (68.57%), Query Frame = 2 
Query:    2 SKRCAHRGCSKHPTYGVQGSKAREFCADHKMEDMV 106
            SKRC H GC+K P+YG  GSK  E CA H ++ MV
Sbjct:    6 SKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
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BLAST of mRNA_L-elsbetiae_contig17991.5149.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 3.260e-5
Identity = 20/33 (60.61%), Postives = 23/33 (69.70%), Query Frame = 2 
Query:   11 CAHRGCSKHPTYGVQGSKAREFCADHKMEDMVN 109
            C H  C+K PTYGV GSK REFC+ H  + MVN
Sbjct:   64 CGHENCTKRPTYGVAGSKKREFCSQHARDGMVN 96
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BLAST of mRNA_L-elsbetiae_contig17991.5149.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 4.110e-5
Identity = 20/33 (60.61%), Postives = 23/33 (69.70%), Query Frame = 2 
Query:   11 CAHRGCSKHPTYGVQGSKAREFCADHKMEDMVN 109
            C H  C+K PTYGV GSK REFC+ H  + MVN
Sbjct:    4 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVN 36
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BLAST of mRNA_L-elsbetiae_contig17991.5149.1 vs. uniprot
Match: D8LCI2_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 8.110e-5
Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 2 
Query:    8 RCAHRGCSKHPTYGVQGSKAREFCADHKMEDMVNPRS 118
            RC H GC KH +YGV+G+K REFC  H    MV+ RS
Sbjct:    5 RCGHPGCGKHSSYGVKGTKEREFCGRHAKMGMVDVRS 41
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17991.5149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G985_ECTSI8.280e-660.00EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FUJ6_ECTSI2.440e-557.14EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE3.260e-560.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI4.110e-560.61EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LCI2_ECTSI8.110e-556.76EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17991contigL-elsbetiae_contig17991:1146..2193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size443
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17991.5149.1prot_L-elsbetiae_contig17991.5149.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17991 1237..2129 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.4494493-UTR-L-elsbetiae_contig17991:1145..12361622815749.4494493-UTR-L-elsbetiae_contig17991:1145..1236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17991 1146..1236 +
1691683077.933475-UTR-L-elsbetiae_contig17991:1145..12361691683077.933475-UTR-L-elsbetiae_contig17991:1145..1236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17991 1146..1236 +
1622815749.4863846-UTR-L-elsbetiae_contig17991:2129..21931622815749.4863846-UTR-L-elsbetiae_contig17991:2129..2193Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17991 2130..2193 +
1691683077.966426-UTR-L-elsbetiae_contig17991:2129..21931691683077.966426-UTR-L-elsbetiae_contig17991:2129..2193Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17991 2130..2193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.4624403-CDS-L-elsbetiae_contig17991:1236..14631622815749.4624403-CDS-L-elsbetiae_contig17991:1236..1463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17991 1237..1463 +
1691683077.942981-CDS-L-elsbetiae_contig17991:1236..14631691683077.942981-CDS-L-elsbetiae_contig17991:1236..1463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17991 1237..1463 +
1622815749.4734728-CDS-L-elsbetiae_contig17991:2068..21291622815749.4734728-CDS-L-elsbetiae_contig17991:2068..2129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17991 2069..2129 +
1691683077.9552083-CDS-L-elsbetiae_contig17991:2068..21291691683077.9552083-CDS-L-elsbetiae_contig17991:2068..2129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17991 2069..2129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17991.5149.1

>prot_L-elsbetiae_contig17991.5149.1 ID=prot_L-elsbetiae_contig17991.5149.1|Name=mRNA_L-elsbetiae_contig17991.5149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MEDMVNPRSAHALGGGTGSDEGVGSAASFAGVCVGEERECKERVLSASER
ANTPAAVTVEEGVIMSALSGTAEAVRRTTGGHKKRRRTEAAPNRP*
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mRNA from alignment at L-elsbetiae_contig17991:1146..2193+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17991.5149.1 ID=mRNA_L-elsbetiae_contig17991.5149.1|Name=mRNA_L-elsbetiae_contig17991.5149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1048bp|location=Sequence derived from alignment at L-elsbetiae_contig17991:1146..2193+ (Laminarionema elsbetiae ELsaHSoW15)
CAGTAAGAGGTGTGCCCATCGTGGTTGCAGCAAGCACCCGACTTACGGCG
TACAGGGCAGCAAGGCTCGGGAGTTCTGCGCTGATCACAAGATGGAGGAC
ATGGTGAACCCACGCTCAGCCCATGCTTTGGGTGGGGGCACCGGCAGTGA
CGAAGGCGTAGGTTCAGCTGCAAGTTTCGCCGGGGTTTGTGTTGGAGAGG
AACGAGAGTGCAAGGAACGAGTTCTCTCGGCGAGCGAGCGAGCCAACACC
CCTGCTGCGGTGACGGTGGAAGAGGGCGTGATCATGTCCGCCCTGTCGGG
CACCGCAGAAGCTGTGAGGTATGTACGTGGAACGTGCCTGGCACGGTTGG
GGCGGTCGCACAGGGAATAAGTACGTTTTGGCCATTTGGATGTTGTTGCA
ATTCGCTCTCTCTCCTCCGCATATATAGATGCGGATTAAGGATCCGGCGA
CACGGCGTTGGTGTTAGTTAGGCGACCTCGCTCGCCACCGTAAGCAAGCG
TGTGTTCTCCTGTGTATGTGCTGCTGATGCAAGACATGTCAGTATGCAGC
AGTTCTGCGGACCCAAAGGTAATGCTGGGGTGCTGTGTATCCATCGGGCG
TGTCGCTGGCATGTGGTGTTGGATTAGATAACAATCTATCGTATATTGTT
TTGGGACCAAGCTACGAAGAAATCTGGTGCACAATGGTTGAACTACGACA
GCGTCAAGGCTGGGCGGTTGTGCGTTTTCCCATTGCCCATATCTCGTGGA
AAGCCCTTCCAGTACCAGGGTTGTTCTCTTGTCTTTGGTTCCTGCTTCCA
TGTCGCTAGTGTTTGTGGCGACTGCCTGGTTTGTCAGAACTGCAGCAGCG
ACGAGAACCGGCTTGTCTCCATACTTTTGTTTTGTTCATGCTCTATCCCG
TGCTCCTTTTTTTGCTCGGCCAGACGAACCACCGGCGGACACAAGAAGCG
ACGCCGGACAGAAGCAGCGCCGAACCGCCCTTAGCGTGTGTTTATGCTTG
GCGCCGGGATACGGGAGGTAGAGATCGGACGGTGCCACACGCGAAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17991:1146..2193+

>mRNA_L-elsbetiae_contig17991.5149.1 ID=mRNA_L-elsbetiae_contig17991.5149.1|Name=mRNA_L-elsbetiae_contig17991.5149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig17991:1146..2193+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGACATGGTGAACCCACGCTCAGCCCATGCTTTGGGTGGGGGCAC
CGGCAGTGACGAAGGCGTAGGTTCAGCTGCAAGTTTCGCCGGGGTTTGTG
TTGGAGAGGAACGAGAGTGCAAGGAACGAGTTCTCTCGGCGAGCGAGCGA
GCCAACACCCCTGCTGCGGTGACGGTGGAAGAGGGCGTGATCATGTCCGC
CCTGTCGGGCACCGCAGAAGCTGTGAGATGGAGGACATGGTGAACCCACG
CTCAGCCCATGCTTTGGGTGGGGGCACCGGCAGTGACGAAGGCGTAGGTT
CAGCTGCAAGTTTCGCCGGGGTTTGTGTTGGAGAGGAACGAGAGTGCAAG
GAACGAGTTCTCTCGGCGAGCGAGCGAGCCAACACCCCTGCTGCGGTGAC
GGTGGAAGAGGGCGTGATCATGTCCGCCCTGTCGGGCACCGCAGAAGCTG
TGAGACGAACCACCGGCGGACACAAGAAGCGACGCCGGACAGAAGCAGCG
CCGAACCGCCCTTAGACGAACCACCGGCGGACACAAGAAGCGACGCCGGA
CAGAAGCAGCGCCGAACCGCCCTTAG
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