mRNA_L-elsbetiae_contig1799.5148.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1799.5148.1
Unique NamemRNA_L-elsbetiae_contig1799.5148.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1799.5148.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.190e-24
Identity = 53/90 (58.89%), Postives = 69/90 (76.67%), Query Frame = -3
Query:  103 KAGAAGAEEVVDSLLRLGADETIADYEGKTAADVVGTDIEKENNLADNVERVCELLTHAPADRAWRRRGYLVLCRAHNGKVQLRQEASST 372
            +AG  GA EVV+SLLR GADETIA+ +G  A D++G D+E+E+ L ++VERV ELL +APADRAWRRRGYL++CRA   +V  R+  S T
Sbjct:  253 QAGRQGAAEVVNSLLRAGADETIANVQGNKAVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGT 342          
BLAST of mRNA_L-elsbetiae_contig1799.5148.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 6.180e-18
Identity = 59/122 (48.36%), Postives = 74/122 (60.66%), Query Frame = -3
Query:   13 AGAAGAEEVVDSLLRLGADETIADYEGKTAADVVGTDIEKENNLADNVERVCELLTHAPADRAWRRRGYLVLCRAHNGKVQLRQEASSTETETMLS-TGKGTKLANASEI--NSSTGAVGDG 369
            AG  GA EVVD LLR  ADET  D  G T  ++VG    + +++  NV+RV +LL +AP DRAWRRRG LVLCRAH  ++ LRQ AS  +  T+L  T   TKL    ++   S  GA  DG
Sbjct:  250 AGDEGAVEVVDLLLRWNADETDDDAYGHTPGNIVGCMTPETDSMFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESTVLRVTRSRTKLVEREQVAGGSGEGAAADG 371          
BLAST of mRNA_L-elsbetiae_contig1799.5148.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.370e-17
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = -3
Query:  109 KAGAAGAEEVVDSLLRLGADETIADYEGKTAADVVGTDIEKENNLADNVERVCELLTHAPADRAWRRRGYLVLCRAH--NGKVQLRQEAS 372
            KAG+ G  E+VD LLR GADET     G TAAD+V    E+ ++LA++V+RV +LL  APADRAWRRRG+L+L RAH   G+VQ     S
Sbjct:  632 KAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRAHYPGGRVQFGHRTS 721          
BLAST of mRNA_L-elsbetiae_contig1799.5148.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 6.800e-15
Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  124 GAEEVVDSLLRLGADETIADYEGKTAADVVGTDIEKENNLADNVERVCELLTHAPADRAWRRRGYLVLCRAHNGKVQL 357
            G+ +VVD LLR GADETI   +G+TAAD +GT      +  D+ ER   LL  APADRAWRRRG LVLCRAH  ++QL
Sbjct:  288 GSAQVVDLLLRWGADETIVSKQGETAADSIGTRRCHRTDPEDD-ERARSLLARAPADRAWRRRGLLVLCRAHPDRLQL 364          
BLAST of mRNA_L-elsbetiae_contig1799.5148.1 vs. uniprot
Match: A0A6H5JMJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMJ6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.750e-14
Identity = 41/76 (53.95%), Postives = 51/76 (67.11%), Query Frame = -3
Query:  142 AGAAGAEEVVDSLLRLGADETIADYEGKTAADVVGTDIEKENNLADNVERVCELLTHAPADRAWRRRGYLVLCRAH 369
            AG  G  EVVDSLLR GADETI D EG+ A D++  ++   +   +  +RV +LL +A ADRAW RR YLVLCR H
Sbjct:   95 AGFEGDTEVVDSLLRSGADETILDSEGRAAVDMISWEVAGLHLSGEQDDRVRDLLVNAQADRAWHRRRYLVLCRTH 170          
BLAST of mRNA_L-elsbetiae_contig1799.5148.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.220e-14
Identity = 44/83 (53.01%), Postives = 54/83 (65.06%), Query Frame = -3
Query:  124 KAGAAGAEEVVDSLLRLGADETIADYEGKTAADVVGTDIEKENNLADNVERVCELLTHAPADRAWRRRGYLVLCRAHNGKVQL 372
            +AG  G  EVVD LLR GADET     G  AAD +G  + +E+ + +  E V +LL +APADRAWRRR  LVLCRA   K+QL
Sbjct:  272 RAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRARPDKMQL 354          
BLAST of mRNA_L-elsbetiae_contig1799.5148.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.870e-14
Identity = 50/92 (54.35%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  106 KAGAAGAEEVVDSLLRLGADETIADYEGKTAADVVGTDIEKEN---NLADNVERVCELLTHAPADRAWRRRGYLVLCRAHNGKVQLRQEASS 372
            +AG  G   +VD LLR GADET  + +G+TAA+VVG  IE      N  D VERV +LL +AP DRAWRRRG+LVLCRA   K +  + ASS
Sbjct:  215 QAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQD-VERVRDLLENAPVDRAWRRRGFLVLCRAFWIKARRLRAASS 305          
BLAST of mRNA_L-elsbetiae_contig1799.5148.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.400e-13
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = -3
Query:  103 KAGAAGAEEVVDSLLRLGADETIADYEGKTAADVVGTDIEKEN---NLADNVERVCELLTHAPADRAWRRRGYLVLCRAHNGKVQLRQEASST 372
            +AG  G   +VD LLR GADET  + +G+TAA+VVG  IE      N  D +ERV +LL +APADRAWRRRG LVLCRA   K +  + ASS+
Sbjct:  264 QAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQD-LERVRDLLENAPADRAWRRRGLLVLCRAFWIKSRRLRAASSS 355          
BLAST of mRNA_L-elsbetiae_contig1799.5148.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.160e-13
Identity = 44/78 (56.41%), Postives = 52/78 (66.67%), Query Frame = -3
Query:  124 GAEEVVDSLLRLGADETIADYEGKTAADVVGTDIEKENNLADNVERVCELLTHAPADRAWRRRGYLVLCRAHNGKVQL 357
            G+ +VV  LLR GADETI   +GKTAAD +GT         D+ ER   LLT APADRAWRRRG LVLC A+  ++QL
Sbjct:  284 GSVQVVGLLLRWGADETIVCKQGKTAADRIGTRRFPSTEPGDD-ERARSLLTRAPADRAWRRRGLLVLCHAYPDRLQL 360          
BLAST of mRNA_L-elsbetiae_contig1799.5148.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 6.230e-13
Identity = 48/86 (55.81%), Postives = 57/86 (66.28%), Query Frame = -3
Query:  115 AGAAGAEEVVDSLLRLGADETIADYEGKTAADVVGTDIEKENNLADN-VERVCELLTHAPADRAWRRRGYLVLCRAHNGKVQLRQE 369
            AG  G+ E+VD LLR GADET  D  G+  AD VG  +E  + L  + V  V ELL +APADRAWRRRG LVLCRA   + +LRQE
Sbjct:  272 AGRQGSAELVDLLLRRGADETTPDRNGQQPADRVGHCMELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQE 357          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1799.5148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXK5_9PHAE5.190e-2458.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G981_ECTSI6.180e-1848.36Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JHY9_9PHAE1.370e-1754.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1U1_ECTSI6.800e-1557.69Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JMJ6_9PHAE2.750e-1453.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKL4_ECTSI3.220e-1453.01Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D7G6X8_ECTSI3.870e-1454.35Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KNU3_9PHAE1.400e-1353.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G137_ECTSI4.160e-1356.41Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FYD0_ECTSI6.230e-1355.81Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1799contigL-elsbetiae_contig1799:18326..18699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size374
Cds size324
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.2026265-UTR-L-elsbetiae_contig1799:18325..183751622815749.2026265-UTR-L-elsbetiae_contig1799:18325..18375Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1799 18326..18375 +
1691683077.769653-UTR-L-elsbetiae_contig1799:18325..183751691683077.769653-UTR-L-elsbetiae_contig1799:18325..18375Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1799 18326..18375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.2177012-CDS-L-elsbetiae_contig1799:18375..186991622815749.2177012-CDS-L-elsbetiae_contig1799:18375..18699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1799 18376..18699 +
1691683077.7797253-CDS-L-elsbetiae_contig1799:18375..186991691683077.7797253-CDS-L-elsbetiae_contig1799:18375..18699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1799 18376..18699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1799.5148.1prot_L-elsbetiae_contig1799.5148.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1799 18376..18699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1799.5148.1

>prot_L-elsbetiae_contig1799.5148.1 ID=prot_L-elsbetiae_contig1799.5148.1|Name=mRNA_L-elsbetiae_contig1799.5148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MRLPAWYLCPCSALSRSQCCWPPVSAAPCRCGRGTTPGSPGDAMLCRPER
ASTVRTRARHYRLDCSLFRCRYRLHLRLFSLRSQRWSRPHLTSAENLPPP
RLLPLQL*
back to top

mRNA from alignment at L-elsbetiae_contig1799:18326..18699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1799.5148.1 ID=mRNA_L-elsbetiae_contig1799.5148.1|Name=mRNA_L-elsbetiae_contig1799.5148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=374bp|location=Sequence derived from alignment at L-elsbetiae_contig1799:18326..18699+ (Laminarionema elsbetiae ELsaHSoW15)
CTCATCCGCAACGCCGTCTCCCACGGCGCCAGTACTGCTGTTAATTTCTG ATGCGTTTGCCAGCTTGGTACCTTTGCCCGTGCTCAGCATTGTCTCGGTC TCAGTGCTGCTGGCCTCCTGTCTCAGCTGCACCTTGCCGTTGTGGGCGCG GCACAACACCAGGTAGCCCCGGCGACGCCATGCTCTGTCGGCCGGAGCGT GCGTCAACAGTTCGCACACGCGCTCGACATTATCGGCTAGATTGTTCTCT TTTTCGATGTCGGTACCGACTACATCTGCGGCTGTTTTCCCTTCGTAGTC AGCGATGGTCTCGTCCGCACCTAACCTCAGCAGAGAATCTACCACCTCCT CGGCTCCTGCCGCTCCAGCTTTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1799:18326..18699+

>mRNA_L-elsbetiae_contig1799.5148.1 ID=mRNA_L-elsbetiae_contig1799.5148.1|Name=mRNA_L-elsbetiae_contig1799.5148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig1799:18326..18699+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTTTGCCAGCTTGGTACCTTTGCCCGTGCTCAGCATTGTCTCGGTC
TCAGTGCTGCTGGCCTCCTGTCTCAGCTGCACCTTGCCGTTGTGGGCGCG
GCACAACACCAGGTAGCCCCGGCGACGCCATGCTCTGTCGGCCGGAGCGT
GCGTCAACAGTTCGCACACGCGCTCGACATTATCGGCTAGATTGTTCTCT
TTTTCGATGTCGGTACCGACTACATCTGCGGCTGTTTTCCCTTCGTAGTC
AGCGATGGTCTCGTCCGCACCTAACCTCAGCAGAGAATCTACCACCTCCT
CGGCTCCTGCCGCTCCAGCTTTAGATGCGTTTGCCAGCTTGGTACCTTTG
CCCGTGCTCAGCATTGTCTCGGTCTCAGTGCTGCTGGCCTCCTGTCTCAG
CTGCACCTTGCCGTTGTGGGCGCGGCACAACACCAGGTAGCCCCGGCGAC
GCCATGCTCTGTCGGCCGGAGCGTGCGTCAACAGTTCGCACACGCGCTCG
ACATTATCGGCTAGATTGTTCTCTTTTTCGATGTCGGTACCGACTACATC
TGCGGCTGTTTTCCCTTCGTAGTCAGCGATGGTCTCGTCCGCACCTAACC
TCAGCAGAGAATCTACCACCTCCTCGGCTCCTGCCGCTCCAGCTTTAG
back to top