mRNA_L-elsbetiae_contig1798.5143.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1798.5143.1
Unique NamemRNA_L-elsbetiae_contig1798.5143.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1798.5143.1 vs. uniprot
Match: D7FGV5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV5_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 5.990e-6
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  387 DTKAIVELMNRAFRHSDCDPLHAKAAMLRSCRAQ-----------ARLLKESRRTLEGGL 533
            D +A+V LMN  FRHS+C PL A+  +LRSC AQ           ARLLKESRRTLEG L
Sbjct: 1272 DAQAVVGLMNSVFRHSECGPLRAET-VLRSCAAQDWLVAGGFEHLARLLKESRRTLEGEL 1330
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1798.5143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGV5_ECTSI5.990e-656.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1798contigL-elsbetiae_contig1798:10904..13370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size634
Cds size255
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.9597487-UTR-L-elsbetiae_contig1798:10903..110711622815748.9597487-UTR-L-elsbetiae_contig1798:10903..11071Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 10904..11071 +
1691683077.630159-UTR-L-elsbetiae_contig1798:10903..110711691683077.630159-UTR-L-elsbetiae_contig1798:10903..11071Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 10904..11071 +
1622815748.9716997-UTR-L-elsbetiae_contig1798:11411..115691622815748.9716997-UTR-L-elsbetiae_contig1798:11411..11569Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 11412..11569 +
1691683077.63988-UTR-L-elsbetiae_contig1798:11411..115691691683077.63988-UTR-L-elsbetiae_contig1798:11411..11569Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 11412..11569 +
1622815749.040523-UTR-L-elsbetiae_contig1798:13317..133701622815749.040523-UTR-L-elsbetiae_contig1798:13317..13370Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 13318..13370 +
1691683077.6891778-UTR-L-elsbetiae_contig1798:13317..133701691683077.6891778-UTR-L-elsbetiae_contig1798:13317..13370Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 13318..13370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.9831762-CDS-L-elsbetiae_contig1798:11569..115891622815748.9831762-CDS-L-elsbetiae_contig1798:11569..11589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 11570..11589 +
1691683077.649174-CDS-L-elsbetiae_contig1798:11569..115891691683077.649174-CDS-L-elsbetiae_contig1798:11569..11589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 11570..11589 +
1622815748.996443-CDS-L-elsbetiae_contig1798:11940..120821622815748.996443-CDS-L-elsbetiae_contig1798:11940..12082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 11941..12082 +
1691683077.65803-CDS-L-elsbetiae_contig1798:11940..120821691683077.65803-CDS-L-elsbetiae_contig1798:11940..12082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 11941..12082 +
1622815749.0114284-CDS-L-elsbetiae_contig1798:12429..125001622815749.0114284-CDS-L-elsbetiae_contig1798:12429..12500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 12430..12500 +
1691683077.6672397-CDS-L-elsbetiae_contig1798:12429..125001691683077.6672397-CDS-L-elsbetiae_contig1798:12429..12500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 12430..12500 +
1622815749.0283518-CDS-L-elsbetiae_contig1798:13295..133171622815749.0283518-CDS-L-elsbetiae_contig1798:13295..13317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 13296..13317 +
1691683077.6795392-CDS-L-elsbetiae_contig1798:13295..133171691683077.6795392-CDS-L-elsbetiae_contig1798:13295..13317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 13296..13317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1798.5143.1prot_L-elsbetiae_contig1798.5143.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1798 11570..13317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1798.5143.1

>prot_L-elsbetiae_contig1798.5143.1 ID=prot_L-elsbetiae_contig1798.5143.1|Name=mRNA_L-elsbetiae_contig1798.5143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MLSRRERVRDCGFRRQQPSLDTKAIVELMNRAFRHSDCDPLHAKAAMLRS
CRAQARLLKESRRTLEGGLGAAQTPTRRWRPCAG*
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mRNA from alignment at L-elsbetiae_contig1798:10904..13370+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1798.5143.1 ID=mRNA_L-elsbetiae_contig1798.5143.1|Name=mRNA_L-elsbetiae_contig1798.5143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2467bp|location=Sequence derived from alignment at L-elsbetiae_contig1798:10904..13370+ (Laminarionema elsbetiae ELsaHSoW15)
AGGACACCGTGGACACCGCCCACGCTATCATCGCCGATATCCACGTTGCT
CACAGCGACAACAGTGACGAGGGCCTCGACGACAGCAGTACTACACCAAG
AACGCTCACGAAGCCGCGTCAACCGCTTCGTGGCAATCGTCAACGCCGGG
GCGGCCGAAGTGGTCCAGGTGAGGCTTAATGACGACAGACAGAACTGCGG
TGGCTCTTGCTGATACCTAGATATTTTTGCCGGGCGGCTGCCCGTTTTCA
GCTGCTGGTATCTCTGTTACCGGTGCCTTCTACTGGTGATGTTGCTGCAT
TGTCCCTTTAAGTACTTTCTCCATTCCACCACTACCTCATGTATCGGGCG
AGTCTAGCCTAGCCTACCTAAGCCCTATATCCCGCCGCTGCCGCTATACG
TCTCCTGGCATGACACGCCTTTTCTCCCGCCTTCTACTGCTGAGACGCTA
TTCTACTTCTGCCGCTGCTGGTGCTGCTGCTGCTATTTGACTCTACTCTA
CTCTGCAGTGCACTACACTACTGCCCGGGGGGCGGCACGATACGGCAGGG
ATGGCGACGGCGATAGCGACGACAACGACATTGTCTCAGCGGGCTCTTCG
GTGGTGGTGACGGAAACCTTTGTGATGAGAGATGCCGGAATGTGCTGAGG
GCGGGCGCGGTGTGCGATGTTATCCAGACGGGAGAGGTATGTGTGTGTGT
ATGGTGGGTGGGAAGCGTGTTCGTGATGTTGTTCGGTGTTCGTTGTCGTT
TGGGCGTCCATGCTCCGCTCTTCACCAGCGTTTCATAAAAGCGCGACCGA
GCCATCTACGATACAGCCTGCGGTTACTTCATACGGAGTATTGTAATACA
TGACTGCTGTGGAATTTGGACAACACAACCACGTCGGTCTGGGTAGGCAT
GTTGTTTTTGCTCGTCTGATGGCATCAGAGGTGCTAATAGTAGTTAGAAC
GGTTCCAATGCTGCAACTACAGCAGTACCACCACCACCACCACCAACCCT
GCGTCGTGGTTGTATTGTGGCTGTCTTGCCGCGCCAGGGTTCGGGACTGC
GGTTTCCGGAGGCAGCAGCCCTCGTTGGACACGAAGGCCATCGTGGAGCT
CATGAACAGAGCCTTTAGGCACTCGGACTGCGACCCGCTGCACGCGAAAG
CTGCCATGCTGAGGAGCTGCAGGGCGCAGGTGTGTTGTTGTGGTGTTGTG
GCTTGATTGGTACCGTAAGCTGGGTTGCCTTGGCCGCTCGATGTACAGGT
TAACGTTATTTTGTGAAGATTTGGCCGATTGGTGAAAGTAGGTTGCGCAA
TACGGCTTGGCACCATGCCGCGGCCACGACCTCTTGCGTATCGTATCGAG
CATCGAACCCAGCGATGGTGTCTACCTCTCTGCTGTGCTGGGCTGTGCTT
TGCACCTACGCCGCGCGTCGTTTGTTTGGGCGTTCAAACGAGTTTGGCAA
CCCCGGCATCTGAATGCTTATTTCTCGTGTTGTCCCGTTTAATTGTTTTT
TCTTCGTGCATGATATGATGGGATAGGCAAGGCTTTTGAAGGAGAGCAGG
CGTACACTGGAGGGGGGGCTAGGTGCTGCGCAGACCCCTACGCGAAGGCG
AGTGTCGTGTGTTTAGATCGTAGTCTCTGGCCGTCCTGTAACCGTGCCGG
TGTTGTTGTGTCTACATACATAGCTGCAGCCTGTTCGCCCGCCCGAGCAG
CTACAACTGGCAAGCAGCTCGTTGCTGCTGCAGTAGTGCACGTTGTTGGT
CATGTTGCTATTGATGATGGTGGTTCGAGCCACGTGTCAGATACATTGCC
CGCCGAACCCATCCCCTCCTACTCTCTACTCTTACAACCATCATCCACCC
GCGCCCCCGACTCGACCAACACACACACACACACACGGCATCTGTCAACG
ACAAACACAGGATCAATGTTTTAAAAAAATTGAAAAGGGAGGAAAGAATA
ACACACAAGCCGAGCTGGGCAGCTTTGGAGGAGAGGACACACCCCGTCGC
CGCCTTCCAAAGCCCAAGAAAACTCACTCTGCCCTTGTCGGAACCCTTCG
CTCCCTGCTCCCGCTCGTCCGGGCGCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCAAAAAAAACCCCCGCGCCCCCCCCGCGGCGGCGGGCCGG
GCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCGGGGGGCGCGCN
NNNNNNCCAAACCCCAAGAAAACCCCCCCCCCCCTTGCCGGACCCCTCCG
CCCCCTCCCCCCCCCCGCCCGGGCCCCCCCCCCCCCCCACCCCCTCCCTC
CCCGGCACCAAAAACGTACCGCGGAACCCCCGGCGGGGCCGGGGCCGGGA
TCGACACGACCCCCCTCGACCCCTCTTCCTCCACGGCGGTAGATGGAGAC
CGTGCGCGGGCTAGCGGCGGTGGTGGTGCAGCTGCTGGCTGCTCTTGCCC
CCCACGGCGCGGCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1798:10904..13370+

>mRNA_L-elsbetiae_contig1798.5143.1 ID=mRNA_L-elsbetiae_contig1798.5143.1|Name=mRNA_L-elsbetiae_contig1798.5143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig1798:10904..13370+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTATCCAGACGGGAGAGATGTTATCCAGACGGGAGAGGGTTCGGGAC
TGCGGTTTCCGGAGGCAGCAGCCCTCGTTGGACACGAAGGCCATCGTGGA
GCTCATGAACAGAGCCTTTAGGCACTCGGACTGCGACCCGCTGCACGCGA
AAGCTGCCATGCTGAGGAGCTGCAGGGCGCAGGGTTCGGGACTGCGGTTT
CCGGAGGCAGCAGCCCTCGTTGGACACGAAGGCCATCGTGGAGCTCATGA
ACAGAGCCTTTAGGCACTCGGACTGCGACCCGCTGCACGCGAAAGCTGCC
ATGCTGAGGAGCTGCAGGGCGCAGGCAAGGCTTTTGAAGGAGAGCAGGCG
TACACTGGAGGGGGGGCTAGGTGCTGCGCAGACCCCTACGCGAAGGCAAG
GCTTTTGAAGGAGAGCAGGCGTACACTGGAGGGGGGGCTAGGTGCTGCGC
AGACCCCTACGCGAAGATGGAGACCGTGCGCGGGCTAGATGGAGACCGTG
CGCGGGCTAG
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