mRNA_L-elsbetiae_contig1798.5142.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1798.5142.1
Unique NamemRNA_L-elsbetiae_contig1798.5142.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1798.5142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1798contigL-elsbetiae_contig1798:5656..9078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons6
Model size997
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1798.5142.1prot_L-elsbetiae_contig1798.5142.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1798 6334..8028 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.844644-UTR-L-elsbetiae_contig1798:5655..58701622815748.844644-UTR-L-elsbetiae_contig1798:5655..5870Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 5656..5870 +
1691683077.543567-UTR-L-elsbetiae_contig1798:5655..58701691683077.543567-UTR-L-elsbetiae_contig1798:5655..5870Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 5656..5870 +
1622815748.8594851-UTR-L-elsbetiae_contig1798:6259..63331622815748.8594851-UTR-L-elsbetiae_contig1798:6259..6333Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 6260..6333 +
1691683077.5551503-UTR-L-elsbetiae_contig1798:6259..63331691683077.5551503-UTR-L-elsbetiae_contig1798:6259..6333Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 6260..6333 +
1622815748.9152973-UTR-L-elsbetiae_contig1798:8028..80901622815748.9152973-UTR-L-elsbetiae_contig1798:8028..8090Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 8029..8090 +
1691683077.6118941-UTR-L-elsbetiae_contig1798:8028..80901691683077.6118941-UTR-L-elsbetiae_contig1798:8028..8090Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 8029..8090 +
1622815748.927032-UTR-L-elsbetiae_contig1798:8951..90781622815748.927032-UTR-L-elsbetiae_contig1798:8951..9078Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 8952..9078 +
1691683077.6208918-UTR-L-elsbetiae_contig1798:8951..90781691683077.6208918-UTR-L-elsbetiae_contig1798:8951..9078Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1798 8952..9078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.871096-CDS-L-elsbetiae_contig1798:6333..65161622815748.871096-CDS-L-elsbetiae_contig1798:6333..6516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 6334..6516 +
1691683077.5661983-CDS-L-elsbetiae_contig1798:6333..65161691683077.5661983-CDS-L-elsbetiae_contig1798:6333..6516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 6334..6516 +
1622815748.881118-CDS-L-elsbetiae_contig1798:6944..70731622815748.881118-CDS-L-elsbetiae_contig1798:6944..7073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 6945..7073 +
1691683077.5776188-CDS-L-elsbetiae_contig1798:6944..70731691683077.5776188-CDS-L-elsbetiae_contig1798:6944..7073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 6945..7073 +
1622815748.8926206-CDS-L-elsbetiae_contig1798:7517..76731622815748.8926206-CDS-L-elsbetiae_contig1798:7517..7673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 7518..7673 +
1691683077.5910294-CDS-L-elsbetiae_contig1798:7517..76731691683077.5910294-CDS-L-elsbetiae_contig1798:7517..7673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 7518..7673 +
1622815748.905265-CDS-L-elsbetiae_contig1798:7977..80281622815748.905265-CDS-L-elsbetiae_contig1798:7977..8028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 7978..8028 +
1691683077.6029155-CDS-L-elsbetiae_contig1798:7977..80281691683077.6029155-CDS-L-elsbetiae_contig1798:7977..8028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1798 7978..8028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1798.5142.1

>prot_L-elsbetiae_contig1798.5142.1 ID=prot_L-elsbetiae_contig1798.5142.1|Name=mRNA_L-elsbetiae_contig1798.5142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MRRCHASVFPRRRRPSSQPWRKALTTRHSCGESRRRGEEKISRTTLEGVN
ATLPSLGQQQQLLCCCFPVPLRTTRRQGGGGWGLGKGAQVAATQAGEPAG
IRTQEKLRGWTRLLWHTKSRGRPNRAGEICQLMRQRVGVGAVVGWAEMVA
DAVSFSTRHVRSWGGAGRLVPH*
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mRNA from alignment at L-elsbetiae_contig1798:5656..9078+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1798.5142.1 ID=mRNA_L-elsbetiae_contig1798.5142.1|Name=mRNA_L-elsbetiae_contig1798.5142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3423bp|location=Sequence derived from alignment at L-elsbetiae_contig1798:5656..9078+ (Laminarionema elsbetiae ELsaHSoW15)
GACTGCCCCCGGGAAACCCACAGCAGTTAGCCGAACTTAACGAGCTGCAC
CTAGATTCTGTTGGTGTTTCGCCACAGAACGCGGGAGGGTGAGTCACATA
CCATTACTAGCGACTTCGTATCTTCCAAGCGTCGGACGAGAGGGTTGCTA
GAGCGGAGCAGCAGCTCGGATGGGCGACCGGCGGACGGGTGCAGGGAAGA
GCAGGAGACTATTCGGTACGTGCTTTGTGTGTGTGTCGTAACGGGGGTTA
AAGGTCGCGTTTCAGTTTTGCGGAGAGTTCAAGCAGCATCTACCAAAAGC
TGTTTTGTCCGGGGATTTCGGGCTCGCTTCCAGGGCACCGTTTAATGCCG
TTCGTTTACCCCGACCCCTCAAAAACCTTGAACCACCACCGCAAAGAAAA
TCGAAAAGGTTGCGGGCCATGGAATCGATGCTACATTCTCCCCTCCCATC
CTATCGTTGCCTGTCGCCTGGTGCCCATATCCACCGCTTTTTAGTTAGGG
GTCGCCTGGCGATCTTTCGGTGCTCGTGTCATCTACAAAGTGGTAGCTGG
TACATAGGGTCTTACCCGATACCCCGCATCGCATCACGTTGTTTGATGAA
CAAGACCGGGGTGTCGCTGCAGACCGTGGCGAGGAAGACGTTTAGAGCGC
GATCGGAAGGGTGAGGGTAGAGCGGGGCATGAGAAGGTGCCACGCCAGCG
TCTTCCCGCGTCGGCGACGGCCGTCGAGCCAGCCTTGGCGGAAAGCACTA
ACGACACGGCATTCGTGCGGAGAAAGCAGGAGGAGAGGCGAAGAGAAGAT
ATCTCGAACGACGCTGGAGGGCGTCAACGCAACACTTCCCTCTCTGGGAC
AACAGCAACAGGTGGGGTTCAACGTCGAGCTCGAGAAACCTTGGTACCAC
GGGTTTGTTTTGATGCTCGAGCACGCGTTGTTGGTTGTTTGGATTCTCAA
CGGGTTCTCTGGAGCGACTTTTTATTTTGTTTATTTTTGTGTGCCGAGTT
TCCGTGCGGGACACCGCGCTTCCAACCCGGCGGCGCTGTCCAAAAGCCGT
TGTACAAAATGTTCGGGACGCTTTACAGTCGGTAGTACTCCTGCGTTCTT
TAAAGACCTACTTTTGATCGCACCCCCGCCCTAACCCCGGCTCCTCCCGA
TCGTAGGACCAACACCTAGACCGAATACCATGCTTAGAACCTCCGATGAT
TATTATTACTAGTCCGATTTCTTACTGAACTCCCCATGCCCTTTTCTCGC
CGCTTGCCTTCGCTGTGACCCCACTTCTACCGTTTTAAGCTACTCTGCTG
CTGTTTTCCAGTGCCGCTGCGAACGACACGGCGGCAGGGGGGCGGCGGCT
GGGGTCTCGGAAAAGGAGCACAGGTGGCGGCAACGCAAGCTGGAGAACCG
GCAGGGATTCGTACGCAGGTGAAGTACGACAACACGGCTCGCGTCCAATA
GATTTTTACGTCGGACTTTAAGCAAGATGGCACGAGGATTTGGGCGTTTT
CTAGGTTCGTTCCTTGCCGAGACGCTTCTGTGGTGCAGCACACATCGACG
TGTAGGTAGGAGTATTATTTGAAATGGCCATACTTATTTAGAAAAATACA
AAAAATACAAAACTTAACTCGTGTTTCTCTCGTCTCCATTGCGTCTGGCG
TCGTTTTGGCCACTAATACATAGTTATGTCTATCACCGGTATGCTATTTC
GGTTATCACCGTTCCGGTCCAAAGTCGTACATACGAAGTGTTGTGTGCAT
ACTTCGTGGTTACACAAATTACACATGCGATGATCACCTGCGTAATTTAG
TGATATGAAACCCTCTCTCCTGAAACGAATATCCCCCCAAAACGTTCTCC
TCTATGATGCAGGAGAAGTTGCGAGGGTGGACGAGATTGCTGTGGCATAC
GAAATCGAGGGGAAGGCCCAATCGCGCCGGCGAAATATGTCAGCTTATGC
GACAGAGAGTGGGTGTGGGCGCCGTCGTGGGTTGGGCGGAGATGGTCGCG
GACGCCGTTTCCTTTTCGGTGAGAGAGAGTGCGTGGTGCGAGATTGCCGG
CTTGCAGTCACCCCCTTGATCTCTGCGTTCCGGACAAGCTGATGCACGCT
ACAAGGGCCTCGGACGGCGGGGGGCTGCGCCTCCCCCGCCCTCCCCCGCC
CTCCGTTAAATGTTGCTCTTGTCAAAATGACAAATGATAGAGACGACGGG
TTTTTTTTTCGAGTTGCGTACCAAGCGGCTGCATGCGAAGTCAGAGAGAG
AGAGAGAGAGCGGGGTCCGTTTCCCCATGGTTATTCTGATAAAAATGCGT
GCTTTGTTATTTATCCCCGCAGACCCGCCACGTGCGCAGTTGGGGGGGGG
CTGGGAGATTGGTGCCGCACTAACTTTTCAAGGGGCGTGCGTCGAGGCTC
TTTTTTCCTTCTTCAAGTTGCCTCGGCCAACTAAGGTGGGTTGTGCTTCT
TCCAGCCTCTCTACGAATAGATCAAACCTAGGTCCACGTCTGGAAAAAGA
GTGCTCGCAAAAACGTGCTGGGGGTGATATATTGGTGTTGAGCGCGCCAT
ACATACATATATACACTCGGAGTTTTTGAGTTTTTTTGTTTATTTCTTGT
GCACAAGTACATACCGGCGTACCAATAATCGGACAGGGATTCGAGTGAGT
TTGGATTGGGATGTTATTTCAGCGATACACCAGTGTTCTGTGTCTATCTA
TACTTCTATTGGGCACAGGCAGATATGTACAATGATAGCCCTCTTTTGCT
TCGAAATTTTAGAGCTCTTGTTTTACAAAGACGAGAGCGCCCCCCGCGGT
TGCGCGGCTGTGGGGTTAATCAGAGGGTGCCCAACTTGAACGATGTTCTT
GTGGCAACGACCCTTCGTATCCCTCTCACTCTAACTCTCACGATTTGGCA
CTGATTTATCCCACTCTGTGCACAGCTTCGGTCTTTGGTCCTTGGCGATG
ATAGCTTTTTGCTGGTGTTATTCGAGATGCAAATAACAGTGGCGGCCTGA
TCCCATTTTCCTTCACCTGTGCTGGGCGTGCTAGGTGCAGTGCTAGGTGC
AGTGTCGACAGACCAAGCTTTCCAGCGGCTAAATATTCAAGAAACAGCGA
CAACCCACACATATCTCTACTGTACCATATGCAACACGACATCTCTGACG
GGCAACTCGTCCGAGTTGGATTGTTTCAGAGATGTTGAAAAATACGTCAT
GGTTGACAAATGCCGAGGCACCGCCGCTGTATCGTGTCTCACGCATTTCT
CCCTCCCTCCTCCCCTCCCTATGTGCGTCTCCCCCTCGTGTCCCAGGCGC
CCACTTCTCCGCCTGTGCCAGCCGCCGTCCGTCAGGCTGGCTAGGGCTGG
ACCTGCGGCCACGGACATGTTCCTCCTCGTAGTGTCCTGCTTCATGCGCG
CCGTCCACTGCAGCGGCGACGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1798:5656..9078+

>mRNA_L-elsbetiae_contig1798.5142.1 ID=mRNA_L-elsbetiae_contig1798.5142.1|Name=mRNA_L-elsbetiae_contig1798.5142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig1798:5656..9078+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAAGGTGCCACGCCAGCGTCTTCCCGCGTCGGCGACGGCCGTCGAG
CCAGCCTTGGCGGAAAGCACTAACGACACGGCATTCGTGCGGAGAAAGCA
GGAGGAGAGGCGAAGAGAAGATATCTCGAACGACGCTGGAGGGCGTCAAC
GCAACACTTCCCTCTCTGGGACAACAGCAACAGATGAGAAGGTGCCACGC
CAGCGTCTTCCCGCGTCGGCGACGGCCGTCGAGCCAGCCTTGGCGGAAAG
CACTAACGACACGGCATTCGTGCGGAGAAAGCAGGAGGAGAGGCGAAGAG
AAGATATCTCGAACGACGCTGGAGGGCGTCAACGCAACACTTCCCTCTCT
GGGACAACAGCAACAGCTACTCTGCTGCTGTTTTCCAGTGCCGCTGCGAA
CGACACGGCGGCAGGGGGGCGGCGGCTGGGGTCTCGGAAAAGGAGCACAG
GTGGCGGCAACGCAAGCTGGAGAACCGGCAGGGATTCGTACGCAGCTACT
CTGCTGCTGTTTTCCAGTGCCGCTGCGAACGACACGGCGGCAGGGGGGCG
GCGGCTGGGGTCTCGGAAAAGGAGCACAGGTGGCGGCAACGCAAGCTGGA
GAACCGGCAGGGATTCGTACGCAGGAGAAGTTGCGAGGGTGGACGAGATT
GCTGTGGCATACGAAATCGAGGGGAAGGCCCAATCGCGCCGGCGAAATAT
GTCAGCTTATGCGACAGAGAGTGGGTGTGGGCGCCGTCGTGGGTTGGGCG
GAGATGGTCGCGGACGCCGTTTCCTTTTCGGAGAAGTTGCGAGGGTGGAC
GAGATTGCTGTGGCATACGAAATCGAGGGGAAGGCCCAATCGCGCCGGCG
AAATATGTCAGCTTATGCGACAGAGAGTGGGTGTGGGCGCCGTCGTGGGT
TGGGCGGAGATGGTCGCGGACGCCGTTTCCTTTTCGACCCGCCACGTGCG
CAGTTGGGGGGGGGCTGGGAGATTGGTGCCGCACTAAACCCGCCACGTGC
GCAGTTGGGGGGGGGCTGGGAGATTGGTGCCGCACTAA
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