mRNA_L-elsbetiae_contig17973.5139.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17973.5139.1
Unique NamemRNA_L-elsbetiae_contig17973.5139.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17973.5139.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 3.120e-54
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = -2 
Query:    3 LVVSAADESWRVILCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVADVWRD 284
            LVVSAADESWRVI CWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVA+VWRD
Sbjct:  125 LVVSAADESWRVIFCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVAEVWRD 218
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BLAST of mRNA_L-elsbetiae_contig17973.5139.1 vs. uniprot
Match: A0A6H5LNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNU8_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 5.990e-52
Identity = 87/94 (92.55%), Postives = 92/94 (97.87%), Query Frame = -2 
Query:    3 LVVSAADESWRVILCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVADVWRD 284
            LVVSAAD++WRVILCWASAGR I+VDTQGIPISLVNLQVRSG+DSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQ+QLPGACLAVLVAD WRD
Sbjct:  103 LVVSAADDTWRVILCWASAGRRIDVDTQGIPISLVNLQVRSGVDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQEQLPGACLAVLVADAWRD 196
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BLAST of mRNA_L-elsbetiae_contig17973.5139.1 vs. uniprot
Match: A0A6H5J754_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J754_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 6.110e-52
Identity = 87/94 (92.55%), Postives = 92/94 (97.87%), Query Frame = -2 
Query:    3 LVVSAADESWRVILCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVADVWRD 284
            LVVSAAD++WRVILCWASAGR I+VDTQGIPISLVNLQVRSG+DSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQ+QLPGACLAVLVAD WRD
Sbjct:  103 LVVSAADDTWRVILCWASAGRRIDVDTQGIPISLVNLQVRSGVDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQEQLPGACLAVLVADAWRD 196
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BLAST of mRNA_L-elsbetiae_contig17973.5139.1 vs. uniprot
Match: A0A6H5KMS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS8_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.030e-51
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = -2 
Query:    3 LVVSAADESWRVILCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVADVWRD 284
            LVVSAADESWRVILCWASAGR IEVDT GIPISLV+LQVRSG+DSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVADVWRD
Sbjct:  105 LVVSAADESWRVILCWASAGRRIEVDT-GIPISLVSLQVRSGIDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVADVWRD 197
[Close]
BLAST of mRNA_L-elsbetiae_contig17973.5139.1 vs. uniprot
Match: A0A6H5K2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2W2_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 2.110e-50
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = -2 
Query:    3 LVVSAADESWRVILCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVADVWRD 284
            LVVSAAD++WRVILCWASAG+ I+VDTQGIPISLVNLQVRSG+D QS FFRQLNIA FGHRVVRYAPI+AFGKKWQ+QLPGACLAVLVAD WRD
Sbjct:   88 LVVSAADDTWRVILCWASAGKRIDVDTQGIPISLVNLQVRSGVDLQSRFFRQLNIAAFGHRVVRYAPISAFGKKWQEQLPGACLAVLVADAWRD 181
[Close]
BLAST of mRNA_L-elsbetiae_contig17973.5139.1 vs. uniprot
Match: A0A6H5KR88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR88_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 4.700e-50
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = -2 
Query:   15 LVVSAADESWRVILCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQ-LPGACLAVLVAD 284
            LVVSAAD++WRVI CWASAGR I+VDTQGIPISLVNLQVRSG+DSQSPFFRQLNIATFGHRVVRYAPI AFGKKWQ+Q LPGACLAVLVAD
Sbjct:  158 LVVSAADDTWRVIFCWASAGRRIDVDTQGIPISLVNLQVRSGVDSQSPFFRQLNIATFGHRVVRYAPIAAFGKKWQEQQLPGACLAVLVAD 248
[Close]
BLAST of mRNA_L-elsbetiae_contig17973.5139.1 vs. uniprot
Match: A0A6H5KE79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE79_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 6.160e-49
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = -2 
Query:    3 LVVSAADESWRVILCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAF----------GKKWQKQLPGACLAVLVADVWRD 284
            LVVSAAD++W VILCWASAGR I+VDTQGIPISLVNLQVRSG+DSQSP FRQLNIATFGHRVVRYAPITAF          GKKWQKQLPGACLAVLVADVWRD
Sbjct:  105 LVVSAADDTWLVILCWASAGRRIDVDTQGIPISLVNLQVRSGVDSQSPLFRQLNIATFGHRVVRYAPITAFVXXXXXXXXXGKKWQKQLPGACLAVLVADVWRD 208
[Close]
BLAST of mRNA_L-elsbetiae_contig17973.5139.1 vs. uniprot
Match: A0A6H5JDB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB7_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 4.930e-48
Identity = 83/94 (88.30%), Postives = 88/94 (93.62%), Query Frame = -2 
Query:    3 LVVSAADESWRVILCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVADVWRD 284
            LVVSAADE+WRVILCWASAGREIEV+TQGIPISLV+LQVRSG+DSQSP FR L IATFGHRVVRYAPITAF KKWQ+QLPGACL VLVAD WRD
Sbjct:  118 LVVSAADETWRVILCWASAGREIEVNTQGIPISLVDLQVRSGVDSQSPLFRPLTIATFGHRVVRYAPITAFRKKWQEQLPGACLVVLVADAWRD 211
[Close]
BLAST of mRNA_L-elsbetiae_contig17973.5139.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 4.990e-48
Identity = 80/94 (85.11%), Postives = 89/94 (94.68%), Query Frame = -2 
Query:    3 LVVSAADESWRVILCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVADVWRD 284
            LVVS+ADE+WRVILCWASAGR I+VD+QGIP SL++LQVRSG+DSQSP FRQLNIATFGHRVVRY P+TAFGKKWQ+QLPGACLAVLVAD WRD
Sbjct:  125 LVVSSADETWRVILCWASAGRRIDVDSQGIPFSLLSLQVRSGVDSQSPLFRQLNIATFGHRVVRYTPMTAFGKKWQEQLPGACLAVLVADTWRD 218
[Close]
BLAST of mRNA_L-elsbetiae_contig17973.5139.1 vs. uniprot
Match: A0A6H5JU52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU52_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 5.830e-47
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:   48 LVVSAADESWRVILCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQL 284
            LVVSAADESWRVILCWASAGREIEVDTQGIPISLVNLQV+SG+DSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQL
Sbjct:  146 LVVSAADESWRVILCWASAGREIEVDTQGIPISLVNLQVQSGVDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQL 224
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17973.5139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQN9_ECTSI3.120e-5497.87Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5LNU8_9PHAE5.990e-5292.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J754_9PHAE6.110e-5292.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMS8_9PHAE1.030e-5195.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2W2_9PHAE2.110e-5087.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR88_9PHAE4.700e-5090.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE79_9PHAE6.160e-4983.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDB7_9PHAE4.930e-4888.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS9_9PHAE4.990e-4885.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU52_9PHAE5.830e-4797.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17973contigL-elsbetiae_contig17973:2..286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_005630.1
Exons1
Model size286
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.631978-CDS-L-elsbetiae_contig17973:1..2861622815748.631978-CDS-L-elsbetiae_contig17973:1..286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17973 2..286 +
1691683077.398715-CDS-L-elsbetiae_contig17973:1..2861691683077.398715-CDS-L-elsbetiae_contig17973:1..286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17973 2..286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17973.5139.1prot_L-elsbetiae_contig17973.5139.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17973 2..286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17973.5139.1

>prot_L-elsbetiae_contig17973.5139.1 ID=prot_L-elsbetiae_contig17973.5139.1|Name=mRNA_L-elsbetiae_contig17973.5139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
LSRQTSATRTARQAPGSCFCHFLPNAVMGAYLTTLCPKVAMLSCLKKGLC
ESRPDRTWRFTREIGMPWVSTSISLPADAQQRITRQLSSAADTTS
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mRNA from alignment at L-elsbetiae_contig17973:2..286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17973.5139.1 ID=mRNA_L-elsbetiae_contig17973.5139.1|Name=mRNA_L-elsbetiae_contig17973.5139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=285bp|location=Sequence derived from alignment at L-elsbetiae_contig17973:2..286+ (Laminarionema elsbetiae ELsaHSoW15)
CTATCGCGCCAAACGTCGGCGACGAGGACAGCGAGACAGGCTCCGGGAAG
CTGTTTCTGCCATTTTTTGCCGAATGCGGTGATGGGGGCATATCTCACAA
CTCTGTGCCCGAAGGTCGCTATGTTAAGCTGTCTGAAAAAAGGGCTCTGT
GAGTCGAGACCAGATCGGACCTGGAGGTTCACAAGAGAGATCGGGATGCC
CTGGGTGTCGACTTCGATCTCCCTGCCAGCTGACGCCCAGCAGAGGATCA
CTCGCCAGCTCTCGTCGGCCGCTGACACAACCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17973:2..286+

>mRNA_L-elsbetiae_contig17973.5139.1 ID=mRNA_L-elsbetiae_contig17973.5139.1|Name=mRNA_L-elsbetiae_contig17973.5139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig17973:2..286+ (Laminarionema elsbetiae ELsaHSoW15)
CTATCGCGCCAAACGTCGGCGACGAGGACAGCGAGACAGGCTCCGGGAAG
CTGTTTCTGCCATTTTTTGCCGAATGCGGTGATGGGGGCATATCTCACAA
CTCTGTGCCCGAAGGTCGCTATGTTAAGCTGTCTGAAAAAAGGGCTCTGT
GAGTCGAGACCAGATCGGACCTGGAGGTTCACAAGAGAGATCGGGATGCC
CTGGGTGTCGACTTCGATCTCCCTGCCAGCTGACGCCCAGCAGAGGATCA
CTCGCCAGCTCTCGTCGGCCGCTGACACAACCAGCCTATCGCGCCAAACG
TCGGCGACGAGGACAGCGAGACAGGCTCCGGGAAGCTGTTTCTGCCATTT
TTTGCCGAATGCGGTGATGGGGGCATATCTCACAACTCTGTGCCCGAAGG
TCGCTATGTTAAGCTGTCTGAAAAAAGGGCTCTGTGAGTCGAGACCAGAT
CGGACCTGGAGGTTCACAAGAGAGATCGGGATGCCCTGGGTGTCGACTTC
GATCTCCCTGCCAGCTGACGCCCAGCAGAGGATCACTCGCCAGCTCTCGT
CGGCCGCTGACACAACCAGC
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