mRNA_L-elsbetiae_contig17967.5138.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17967.5138.1
Unique NamemRNA_L-elsbetiae_contig17967.5138.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17967.5138.1 vs. uniprot
Match: A0A6H5JEP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEP8_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 3.800e-75
Identity = 119/130 (91.54%), Postives = 124/130 (95.38%), Query Frame = 1 
Query:    1 AAVQALLPEDEPWNGQKIRPLPELKEFLLANRHHGGKRGMNVITAMMLKAMSEGDIERAKYLKGAAICMTKAENTITGPFRQAVMFAENRLAPCMGSTVCEEYAGNDGADAGATWVVLKACVAEWELRLR 390
            AAV ALLPEDEPWNG KIRPLPELK+FLLANR HGGKRGMNVI+AMMLKAMSEGD++RAKYLKGAAICMTKAE+TITGPFRQAVMFAENRLAPCMGSTVCEEYAG D ADA ATWVVLKACVAEWELRLR
Sbjct:  368 AAVIALLPEDEPWNGAKIRPLPELKDFLLANRRHGGKRGMNVISAMMLKAMSEGDLDRAKYLKGAAICMTKAEDTITGPFRQAVMFAENRLAPCMGSTVCEEYAGEDAADAAATWVVLKACVAEWELRLR 497
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BLAST of mRNA_L-elsbetiae_contig17967.5138.1 vs. uniprot
Match: A0A836CQX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQX4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 8.480e-27
Identity = 64/130 (49.23%), Postives = 80/130 (61.54%), Query Frame = 1 
Query:    1 AAVQALLPEDEPWNGQKIRPLPELKEFLLANRHHGGKRGMNVITAMMLKAMSEGDIERAKYLKGAAICMTKAENTITGPFRQAVMFAENRLAPCMGSTVCEEYAGNDGADAGATWVVLKACVAEWELRLR 390
            AA++AL+P D          +  LKEFL+ANRH GG RG   +T +ML+A S  D  RA  ++   +   KAE+ +TGPFRQA+  AE RLAP MGS     Y G D ADA AT++ LKA VAEWE R R
Sbjct:  157 AALEALVPGDS-------TDVTALKEFLVANRHVGGNRGEAALTQLMLQAQSRRDRARALRMRHLLLAFMKAESAVTGPFRQAIKNAEARLAPNMGSQEVARYGGADAADAVATFLCLKALVAEWEKRYR 279
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BLAST of mRNA_L-elsbetiae_contig17967.5138.1 vs. uniprot
Match: A0A7S4D4Y1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4Y1_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 5.590e-16
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = 1 
Query:   70 LKEFLLANRHHGGKRGMNVITAMMLKAMSEGDIERAKYLKGAAICMTKAENTITGPFRQAVMFAENRLAPCMGSTVCEEYAGNDGADAGATWVVLKACVAEWELR 384
            L  F++ N+   G +   V+T++ L+A  + D  +A+Y       +   ENT+  PFR  +M  E RLAP MG+   E++AG D AD  ATW++LKA VAEWE R
Sbjct:  273 LSAFVVDNKDLLGVKARKVLTSLKLRAQQQFDKNKARYYDDMRRALILKENTLMAPFRLLMMRTEERLAPMMGNMEPEKWAGQDRADYLATWLLLKAAVAEWEKR 377
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BLAST of mRNA_L-elsbetiae_contig17967.5138.1 vs. uniprot
Match: A0A7S2VZJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZJ6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.570e-9
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:   67 ELKEFLLANRHH-GGKRGMNVITAMMLKAMSEGDIERAKYLKGAAICMTKAENTITGPFRQAVMFAENRLAPCMGSTVCEEYAGNDGADAGATWVVLKACVAEWELRL 387
            E  +F+LANR   GG + +     M LKA SEG  ERA YL+     +   E+++  PFRQ V+ AE R+ P  G+     +A     +  + ++VLK  VA WE ++
Sbjct:  236 EALDFVLANRDLLGGWKMLKTFGRMKLKAQSEGQKERALYLRQLWKRLWTLEDSLNAPFRQMVLDAEARVGPNFGNLDVTAFASGHLYERTSNYLVLKGMVAHWEKKV 343
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17967.5138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JEP8_9PHAE3.800e-7591.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CQX4_9STRA8.480e-2749.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D4Y1_HETAK5.590e-1640.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2VZJ6_9STRA2.570e-936.11Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17967contigL-elsbetiae_contig17967:327..2319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.2
Seed ortholog evalue1.1e-63
Seed eggNOG ortholog2880.D7G7G1
Hectar predicted targeting categoryother localisation
EggNOG OGs2E30C@1,2SA5W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_000130.1
Exons3
Model size399
Cds size399
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17967.5138.1prot_L-elsbetiae_contig17967.5138.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17967 327..2319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.5772312-CDS-L-elsbetiae_contig17967:326..4931622815748.5772312-CDS-L-elsbetiae_contig17967:326..493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17967 327..493 +
1691683077.3701506-CDS-L-elsbetiae_contig17967:326..4931691683077.3701506-CDS-L-elsbetiae_contig17967:326..493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17967 327..493 +
1622815748.5882702-CDS-L-elsbetiae_contig17967:1475..15541622815748.5882702-CDS-L-elsbetiae_contig17967:1475..1554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17967 1476..1554 +
1691683077.3811626-CDS-L-elsbetiae_contig17967:1475..15541691683077.3811626-CDS-L-elsbetiae_contig17967:1475..1554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17967 1476..1554 +
1622815748.6004834-CDS-L-elsbetiae_contig17967:2166..23191622815748.6004834-CDS-L-elsbetiae_contig17967:2166..2319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17967 2167..2319 +
1691683077.3899472-CDS-L-elsbetiae_contig17967:2166..23191691683077.3899472-CDS-L-elsbetiae_contig17967:2166..2319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17967 2167..2319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17967.5138.1

>prot_L-elsbetiae_contig17967.5138.1 ID=prot_L-elsbetiae_contig17967.5138.1|Name=mRNA_L-elsbetiae_contig17967.5138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
AAVQALLPEDEPWNGQKIRPLPELKEFLLANRHHGGKRGMNVITAMMLKA
MSEGDIERAKYLKGAAICMTKAENTITGPFRQAVMFAENRLAPCMGSTVC
EEYAGNDGADAGATWVVLKACVAEWELRLRCV*
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mRNA from alignment at L-elsbetiae_contig17967:327..2319+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17967.5138.1 ID=mRNA_L-elsbetiae_contig17967.5138.1|Name=mRNA_L-elsbetiae_contig17967.5138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1993bp|location=Sequence derived from alignment at L-elsbetiae_contig17967:327..2319+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGCTGTGCAGGCACTCCTGCCGGAAGACGAGCCGTGGAACGGGCAGAA
GATCAGGCCTTTGCCGGAGCTGAAGGAGTTCCTGCTGGCGAACCGGCACC
ACGGGGGAAAGCGCGGCATGAACGTCATCACGGCCATGATGCTCAAGGCC
ATGAGTGAGGGGGACATGTGAGCCCAACCTTAACCCACCACTTTGTGGTA
TGTAGTTGGTGTGTAGTAACCAGGCTTGTGTGTGCGTAGTTTTGGTGGCC
CCAAGTAGAGCAGGGTTACTTGTCATTGCCCCCACGGCACACAGATGCCA
TGCAATACATACACATACGGATGTAGATACGGAAAACATGCGCAGTGTCG
AGAATCTGGAACTCCTCATGCACAGGAAGTATCGCGTTTGTCGGCTCGTT
GGGCCCATTTTTGGGGTAGGTGTGTGCCTTTGTAACAGGGGGAGTTAGCC
CTGTGGCCACGGGACCGTCCGTGTGGTGTGTTGGACGAGTATTGTACGGA
CAGATGAGGGTACATGCTGAGTAGACAGAGATCGGGACGGCTTTTGATAC
GACAAAAACAGTGAACAACAGCAACAACAACGATATCATCGACACAGGCG
TGCATGACTGGTTGCCGTCGTGTTTTTTTTGTCAATCCCCAACTGCGACC
GTACCCGACAAGTCCACACCACTGTGCCCCCATATATGTATGTACCAGTC
GCAACTGTTGCAGAGCCCCGCCCCGCTCGTGTAAGACGCCCGCCTGTGGG
TACACAGTAGTGGACATTTTTGGGTACAGTAGTATGTACCTACACCTTTT
TACGAGCGGGGGGCCCCTGTTGGAATGGATTTCGCCAGCGTGTGCCACTG
CTGTTTTTGTGCTGTTGCACTGCTGCTGCTGTTGCTGCCGCAGCTGCTGC
TGGTTGTACGGTTCCGCTTTAGAGATATATCAGCCTGGGTCGCCAATCGT
TACTCATGCTGGTCTCCCTGGCCTTCCTTGCCGTTATTGTTACCGGTGTG
TTCTTGTGATTGACTGACTACCGTTATTCTTACCGGTGATGGCGTGTTCT
TGTGATTGACTGACTTAACGTCGTTGTTACCGGTGGGAGTTTGTTCTTGT
GACTGACTGACTACCGTTATTGTTACCGTTATTGTTACCGTCATTTCAGC
GAGCGCGCGAAGTACCTTAAGGGGGCGGCTATATGCATGACCAAGGCGGA
GAACACCATCACGGGACCATTTCGCCAGGTCGGTTGTTGTATTATAGTGC
TGTCATGCACTACAATTATAGTGTTTTTTTTCTTCTGTTTTTTCTCCTCC
CATTATTGGCTTATTCGTCGTCTGCCCCACTGGCCCCCATACCCCACTAC
GACTAGCTAGACGACCCAGCCGGGGTCACACAGGAGGGGGGGCATGGACC
CCCTCCTGTGGTGCCTGCTGCCTGTGTTACGTTTAATCGTGCTGTCATGC
ACTACAATTAACTAGTTAACTACAGCAGTTACAGCTTTAATGTACACACA
CCTGATACGATTTGCAAGCAACTTGCACTGAGCTACGTATATAGAGTAGG
TACGGCTAAACACGGCAGACGCGAGAAAGGGATGGAAAAGACTCCCGCAA
TGCACTTGTATAAAACCCTAACTCTAGATGCTGTAGTGTCCTACCACGGG
GGCTACGCCATGTACCATACATAATATTTACCGATACATACACCCTAACC
CCCATCAGTTCTTATGCCTCTGCCTCTTGTGTTTCGGCCTCTGTCTTGTC
TTGCTGCGACGTTATGGATATCTACGTCGATCATTTCCATTTCTTGTCTG
ACGATTACCACGACGGTGACGCCATGTGATCTTACGACAGGCGGTCATGT
TTGCCGAGAACCGGTTGGCGCCGTGCATGGGGAGCACGGTGTGCGAGGAG
TACGCCGGGAATGACGGGGCGGACGCGGGCGCAACGTGGGTCGTGCTCAA
GGCCTGCGTCGCGGAGTGGGAGCTGCGCCTGAGGTGTGTTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17967:327..2319+

>mRNA_L-elsbetiae_contig17967.5138.1 ID=mRNA_L-elsbetiae_contig17967.5138.1|Name=mRNA_L-elsbetiae_contig17967.5138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig17967:327..2319+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGCTGTGCAGGCACTCCTGCCGGAAGACGAGCCGTGGAACGGGCAGAA
GATCAGGCCTTTGCCGGAGCTGAAGGAGTTCCTGCTGGCGAACCGGCACC
ACGGGGGAAAGCGCGGCATGAACGTCATCACGGCCATGATGCTCAAGGCC
ATGAGTGAGGGGGACATGCTGCTGTGCAGGCACTCCTGCCGGAAGACGAG
CCGTGGAACGGGCAGAAGATCAGGCCTTTGCCGGAGCTGAAGGAGTTCCT
GCTGGCGAACCGGCACCACGGGGGAAAGCGCGGCATGAACGTCATCACGG
CCATGATGCTCAAGGCCATGAGTGAGGGGGACATCGAGCGCGCGAAGTAC
CTTAAGGGGGCGGCTATATGCATGACCAAGGCGGAGAACACCATCACGGG
ACCATTTCGCCAGCGAGCGCGCGAAGTACCTTAAGGGGGCGGCTATATGC
ATGACCAAGGCGGAGAACACCATCACGGGACCATTTCGCCAGGCGGTCAT
GTTTGCCGAGAACCGGTTGGCGCCGTGCATGGGGAGCACGGTGTGCGAGG
AGTACGCCGGGAATGACGGGGCGGACGCGGGCGCAACGTGGGTCGTGCTC
AAGGCCTGCGTCGCGGAGTGGGAGCTGCGCCTGAGGTGTGTTTGAGCGGT
CATGTTTGCCGAGAACCGGTTGGCGCCGTGCATGGGGAGCACGGTGTGCG
AGGAGTACGCCGGGAATGACGGGGCGGACGCGGGCGCAACGTGGGTCGTG
CTCAAGGCCTGCGTCGCGGAGTGGGAGCTGCGCCTGAGGTGTGTTTGA
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