mRNA_L-elsbetiae_contig1795.5135.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1795.5135.1
Unique NamemRNA_L-elsbetiae_contig1795.5135.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1795.5135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1795contigL-elsbetiae_contig1795:13622..14274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_005720.1
Exons2
Model size318
Cds size318
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.19061-CDS-L-elsbetiae_contig1795:13621..137321622815748.19061-CDS-L-elsbetiae_contig1795:13621..13732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1795 13622..13732 +
1691683077.0928156-CDS-L-elsbetiae_contig1795:13621..137321691683077.0928156-CDS-L-elsbetiae_contig1795:13621..13732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1795 13622..13732 +
1622815748.208587-CDS-L-elsbetiae_contig1795:14067..142741622815748.208587-CDS-L-elsbetiae_contig1795:14067..14274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1795 14068..14274 +
1691683077.1023438-CDS-L-elsbetiae_contig1795:14067..142741691683077.1023438-CDS-L-elsbetiae_contig1795:14067..14274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1795 14068..14274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1795.5135.1prot_L-elsbetiae_contig1795.5135.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1795 13622..14274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1795.5135.1

>prot_L-elsbetiae_contig1795.5135.1 ID=prot_L-elsbetiae_contig1795.5135.1|Name=mRNA_L-elsbetiae_contig1795.5135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MAKTEEAAAGSDMQAKVTGVKKLLANFKKKLANVKKQHKNAEKTLKNVQK
QAKNAEKQMKNAQKKLGGDDKESAGEEEEEEPGKDANDGDAQTDDADADA
EVTPS*
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mRNA from alignment at L-elsbetiae_contig1795:13622..14274+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1795.5135.1 ID=mRNA_L-elsbetiae_contig1795.5135.1|Name=mRNA_L-elsbetiae_contig1795.5135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=653bp|location=Sequence derived from alignment at L-elsbetiae_contig1795:13622..14274+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAAGACAGAAGAAGCGGCGGCCGGGAGCGACATGCAGGCGAAAGT
AACGGGCGTGAAGAAACTGCTGGCTAACTTTAAGAAAAAGCTGGCCAACG
TCAAGAAGCAGGTGTGGATGCTGTAAGCAAGCGTGTAGTTAGTGGTCGAT
CGGGGTCTTATCCGCAGCCGTGCAGCTTCTATGAGTTCAATGCCACGATT
TGCCTACTTTGGAAAGCATGTGCCAGGCTCTCCAATAATAATGTAGTGGA
TATATTGTAAAGGGTTCACTTCCGGCCTCTCACCCTGTTGGAAAAGGTTC
CTAGATATCAGCTGGTAAGTATTGTGCATCCTGTTCCGGAGGTTTTTTGT
CCAAGTCGAAGTTCAACAAATGGAAAGGGCAAACGGTAAGTGTGTGCTTC
GTCCCACCTTCCCGCCCTCCCTCAAAACCATATTCGCCGACGAAAGCACA
AGAATGCAGAGAAGACTCTGAAAAATGTGCAAAAGCAAGCGAAGAATGCG
GAGAAGCAAATGAAGAACGCGCAGAAGAAACTCGGGGGTGACGACAAAGA
GTCCGCCGGGGAGGAGGAGGAAGAGGAGCCTGGAAAAGATGCCAACGACG
GTGATGCTCAAACCGACGACGCCGACGCCGACGCTGAGGTTACTCCGTCA
TAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1795:13622..14274+

>mRNA_L-elsbetiae_contig1795.5135.1 ID=mRNA_L-elsbetiae_contig1795.5135.1|Name=mRNA_L-elsbetiae_contig1795.5135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig1795:13622..14274+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAAGACAGAAGAAGCGGCGGCCGGGAGCGACATGCAGGCGAAAGT
AACGGGCGTGAAGAAACTGCTGGCTAACTTTAAGAAAAAGCTGGCCAACG
TCAAGAAGCAGATGGCGAAGACAGAAGAAGCGGCGGCCGGGAGCGACATG
CAGGCGAAAGTAACGGGCGTGAAGAAACTGCTGGCTAACTTTAAGAAAAA
GCTGGCCAACGTCAAGAAGCAGCACAAGAATGCAGAGAAGACTCTGAAAA
ATGTGCAAAAGCAAGCGAAGAATGCGGAGAAGCAAATGAAGAACGCGCAG
AAGAAACTCGGGGGTGACGACAAAGAGTCCGCCGGGGAGGAGGAGGAAGA
GGAGCCTGGAAAAGATGCCAACGACGGTGATGCTCAAACCGACGACGCCG
ACGCCGACGCTGAGGTTACTCCGTCATAACACAAGAATGCAGAGAAGACT
CTGAAAAATGTGCAAAAGCAAGCGAAGAATGCGGAGAAGCAAATGAAGAA
CGCGCAGAAGAAACTCGGGGGTGACGACAAAGAGTCCGCCGGGGAGGAGG
AGGAAGAGGAGCCTGGAAAAGATGCCAACGACGGTGATGCTCAAACCGAC
GACGCCGACGCCGACGCTGAGGTTACTCCGTCATAA
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