mRNA_L-elsbetiae_contig17943.5133.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17943.5133.1
Unique NamemRNA_L-elsbetiae_contig17943.5133.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17943.5133.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 6.690e-65
Identity = 104/171 (60.82%), Postives = 130/171 (76.02%), Query Frame = 1
Query:   28 RKRVPWSTYTKPMLGDGTFKGRFRMGHEDFMALLELIREELQRDEKMGGLRNGAIPVEYQLAMTLRWLAGSSIYEGMDMHVIARSTAYSIVHRVIDALNASSDLDCVWPVGDDVARAAAGFEKRSSWNVIEKAFGAMDGLFIRLIKPNHHEHAATNSFFSGHKKAFGMNFQ 540
            R+R  + TY +PM+ D TF+ RFRM + DFM L +++R +LQRDEKMG LRNGAIPVE+QLAMTLR+LAG S++E MD +VIA+STAY+IVHRVIDA+N +  L+C WP GDD    A  + +RS+  VI +  GAMDGLF+RLI P    HA   SF+SGHKKAFGMNFQ
Sbjct:   52 RERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222          
BLAST of mRNA_L-elsbetiae_contig17943.5133.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.970e-62
Identity = 99/178 (55.62%), Postives = 130/178 (73.03%), Query Frame = 1
Query:    7 TRKPLLPRKRVPWSTYTKPMLGDGTFKGRFRMGHEDFMALLELIREELQRDEKMGGLRNGAIPVEYQLAMTLRWLAGSSIYEGMDMHVIARSTAYSIVHRVIDALNASSDLDCVWPVGDDVARAAAGFEKRSSWNVIEKAFGAMDGLFIRLIKPNHHEHAATNSFFSGHKKAFGMNFQ 540
            TR   + R+R  W TY KPM+ DGTF+ RFRM + +F  L +++R +L+R+E+MG LRNG IPVE+QLAM LR+LAG S++E MD +VIARSTAY+IVHRVIDA+N + +LDCVWP G+D       + +RS+  VI    GAMDGLF+R+ +P+   H    SF+SGHKK FGMNFQ
Sbjct:   41 TRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGMYRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQ 218          
BLAST of mRNA_L-elsbetiae_contig17943.5133.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.800e-60
Identity = 101/179 (56.42%), Postives = 128/179 (71.51%), Query Frame = 1
Query:    4 RTRKPLLPRKRVPWSTYTKPMLGDGTFKGRFRMGHEDFMALLELIREELQRDEKMGGLRNGAIPVEYQLAMTLRWLAGSSIYEGMDMHVIARSTAYSIVHRVIDALNASSDLDCVWPVGDDVARAAAGFEKRSSWNVIEKAFGAMDGLFIRLIKPNHHEHAATNSFFSGHKKAFGMNFQ 540
            R R  L+ R+R P+ TY KPML D TF  RFRM ++DF  L++ +R  LQ++EK G LRNGAIPVEYQ+AMTLRWLAG SIYE MD HVIARSTAY +   VI+ALNA  +L+C WP G+D+    +     +  +V+ K  GAMDGLF+R+IKP+  E A  N +++GHKK FGMNFQ
Sbjct:   44 RNRSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 222          
BLAST of mRNA_L-elsbetiae_contig17943.5133.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.430e-49
Identity = 89/172 (51.74%), Postives = 116/172 (67.44%), Query Frame = 1
Query:    4 RTRKPLLPRKRVPWSTYTKPMLGDGTFKGRFRMGHEDFMALLELIREELQRDEKMGGLRNGAIPVEYQLAMTLRWLAGSSIYEGMDMHVIARSTAYSIVHRVIDALNASSDLDCVWPVGDDVARAAAGFEKRSSWNVIEKAFGAMDGLFIRLIKPNHHEHAATNSFFSGHKK 519
            R R  L+ R+R P+ T+ KP+L D TF  RFRM ++DF  L++ +R  L ++EKMG LR GAIPVEYQ+AMTLRWLAG SIYE MD HVIARSTAY +   VI+ALNA  +L+C WP               +  +V+ K  GAMDGLF+R+IKP+  E A  N +++GH+K
Sbjct:   44 RNRSTLVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWP--------------EARMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRK 201          
BLAST of mRNA_L-elsbetiae_contig17943.5133.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 3.560e-49
Identity = 85/141 (60.28%), Postives = 107/141 (75.89%), Query Frame = 1
Query:  118 MALLELIREELQRDEKMGGLRNGAIPVEYQLAMTLRWLAGSSIYEGMDMHVIARSTAYSIVHRVIDALNASSDLDCVWPVGDDVARAAAGFEKRSSWNVIEKAFGAMDGLFIRLIKPNHHEHAATNSFFSGHKKAFGMNFQ 540
            + L++ +R  LQ++++MG LRNGAIPVE Q+AMTLRWLAG SIYE MD HVIARSTAY +   VI+ALNA  +L+C WP G+D ARAA  F  RSS +V+ K  GA DGLF+R+IKP+  E A  N +++GHKK FGMNFQ
Sbjct:   71 LVLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 211          
BLAST of mRNA_L-elsbetiae_contig17943.5133.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 7.150e-48
Identity = 81/125 (64.80%), Postives = 95/125 (76.00%), Query Frame = 1
Query:  166 MGGLRNGAIPVEYQLAMTLRWLAGSSIYEGMDMHVIARSTAYSIVHRVIDALNASSDLDCVWPVGDDVARAAAGFEKRSSWNVIEKAFGAMDGLFIRLIKPNHHEHAATNSFFSGHKKAFGMNFQ 540
            MG LRNGAIPVE Q+AMTLRWLAG SIYE MD HVIARSTAY +   VI+ALNA  +L+C WP G+D ARAA  F  RSS +V+ K  GAMD LF+R+IKP+  E A  N +++GHKK FGMNFQ
Sbjct:    1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 125          
BLAST of mRNA_L-elsbetiae_contig17943.5133.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.960e-32
Identity = 77/159 (48.43%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    1 VRTRKPLLPRKRVPWSTYTKPMLGDGTFKGRFRMGHEDFMALLELIREELQRDEKMGGLRNGAIPVEYQLAMTLRWLAGSSIYEGMDMHVIARSTAYSIVHRVIDALNASSD--LDCVWPVGDDVARAAAGFEK------RSSWNVIEKAFGAMDGLFI 453
            +R+R  L+ R R P+ TY KPML D TF  RFRM ++DF  L++ +R  LQ++EKMG LRNGAIPVEYQ+AMTLRWLAG S YE MD HVIARSTAY   H V DA        ++C     D  A   +GF+K         + V + A+GA + + +
Sbjct:   43 MRSRSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY---HAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVV 198          
BLAST of mRNA_L-elsbetiae_contig17943.5133.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.480e-28
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 1
Query:  166 MGGLRNGAIPVEYQLAMTLRWLAGSSIYEGMDMHVIARSTAYSIVHRVIDALNASSDLDCVWPVGDDVARAAAGFEKRSSW 408
            MG LRNGAIPVEYQ+AMTLRWLAG SIYE MD HVIARSTAY +   VI+ALNA  +L+C WP G+D A AA  F  RSS+
Sbjct:    1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAAGAAELFRNRSSY 81          
BLAST of mRNA_L-elsbetiae_contig17943.5133.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.280e-27
Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = 1
Query:  235 GSSIYEGMDMHVIARSTAYSIVHRVIDALNASSDLDCVWPVGDDVARAAAGFEKRSSWNVIEKAFGAMDGLFIRLIKPNHHEHAATNSFFSGHKKAFGMNFQ 540
            G SI+E MD  V A+STAY+IV+RVIDA+N + + DCVWP GDD       + +RS+ NVI    GAMDGLF+ + +P+   H     F+SGHKK FGMNFQ
Sbjct:   51 GGSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDDALDQCGVYRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQ 152          
BLAST of mRNA_L-elsbetiae_contig17943.5133.1 vs. uniprot
Match: A0A6H5JYU2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.820e-23
Identity = 54/95 (56.84%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  256 MDMHVIARSTAYSIVHRVIDALNASSDLDCVWPVGDDVARAAAGFEKRSSWNVIEKAFGAMDGLFIRLIKPNHHEHAATNSFFSGHKKAFGMNFQ 540
            MD HVIARSTAY     VI+ALNA S+++C WP G+D ARAA  F  RSS +V+ K  GAMDG F+R+IKP+  E    N   +GHKK FG NFQ
Sbjct:    1 MDDHVIARSTAYHETSTVINALNACSEVNCKWPEGEDAARAAELFRNRSSIDVVRKCVGAMDGFFVRMIKPSAKEVVEPNLCNNGHKKGFGTNFQ 95          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17943.5133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K6M2_9PHAE6.690e-6560.82DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE1.970e-6255.62DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE2.800e-6056.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS8_9PHAE1.430e-4951.74DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE3.560e-4960.28DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KD49_9PHAE7.150e-4864.80Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K540_9PHAE1.960e-3248.43DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J9B3_9PHAE3.480e-2869.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCG0_9PHAE3.280e-2752.94DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JYU2_9PHAE1.820e-2356.84Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17943contigL-elsbetiae_contig17943:2077..2616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue5.8e-20
Seed eggNOG ortholog4792.ETI46469
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.nuclease activity
EggNOG OGs3QI3U@4776,KOG4585@1,KOG4585@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.1458344-CDS-L-elsbetiae_contig17943:2076..26161622815748.1458344-CDS-L-elsbetiae_contig17943:2076..2616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17943 2077..2616 -
1691683077.0810726-CDS-L-elsbetiae_contig17943:2076..26161691683077.0810726-CDS-L-elsbetiae_contig17943:2076..2616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17943 2077..2616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17943.5133.1prot_L-elsbetiae_contig17943.5133.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17943 2077..2616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17943.5133.1

>prot_L-elsbetiae_contig17943.5133.1 ID=prot_L-elsbetiae_contig17943.5133.1|Name=mRNA_L-elsbetiae_contig17943.5133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp
VRTRKPLLPRKRVPWSTYTKPMLGDGTFKGRFRMGHEDFMALLELIREEL
QRDEKMGGLRNGAIPVEYQLAMTLRWLAGSSIYEGMDMHVIARSTAYSIV
HRVIDALNASSDLDCVWPVGDDVARAAAGFEKRSSWNVIEKAFGAMDGLF
IRLIKPNHHEHAATNSFFSGHKKAFGMNFQ
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mRNA from alignment at L-elsbetiae_contig17943:2077..2616-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17943.5133.1 ID=mRNA_L-elsbetiae_contig17943.5133.1|Name=mRNA_L-elsbetiae_contig17943.5133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig17943:2077..2616- (Laminarionema elsbetiae ELsaHSoW15)
GTGAGGACCCGCAAGCCTCTCCTGCCAAGAAAGCGCGTGCCTTGGTCGAC CTACACGAAGCCAATGCTTGGAGACGGCACCTTCAAGGGGCGCTTTCGCA TGGGCCACGAGGACTTCATGGCTCTGTTGGAGCTTATCCGGGAGGAGCTA CAGAGAGATGAGAAGATGGGCGGGCTGCGCAACGGCGCCATTCCTGTTGA GTACCAACTGGCGATGACGCTTCGTTGGTTGGCTGGATCGTCGATTTACG AGGGGATGGACATGCACGTGATAGCGAGAAGCACGGCGTACAGCATCGTC CACCGCGTCATCGACGCTCTGAACGCTTCCTCAGACCTGGACTGCGTATG GCCGGTAGGCGACGACGTTGCGAGGGCAGCGGCCGGTTTTGAGAAGCGCA GCTCGTGGAACGTCATCGAGAAAGCGTTCGGAGCGATGGATGGCCTGTTC ATCCGTCTCATCAAGCCGAACCATCACGAGCATGCCGCCACCAACTCCTT CTTCAGCGGCCACAAGAAGGCCTTCGGGATGAACTTCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17943:2077..2616-

>mRNA_L-elsbetiae_contig17943.5133.1 ID=mRNA_L-elsbetiae_contig17943.5133.1|Name=mRNA_L-elsbetiae_contig17943.5133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig17943:2077..2616- (Laminarionema elsbetiae ELsaHSoW15)
GTGAGGACCCGCAAGCCTCTCCTGCCAAGAAAGCGCGTGCCTTGGTCGAC
CTACACGAAGCCAATGCTTGGAGACGGCACCTTCAAGGGGCGCTTTCGCA
TGGGCCACGAGGACTTCATGGCTCTGTTGGAGCTTATCCGGGAGGAGCTA
CAGAGAGATGAGAAGATGGGCGGGCTGCGCAACGGCGCCATTCCTGTTGA
GTACCAACTGGCGATGACGCTTCGTTGGTTGGCTGGATCGTCGATTTACG
AGGGGATGGACATGCACGTGATAGCGAGAAGCACGGCGTACAGCATCGTC
CACCGCGTCATCGACGCTCTGAACGCTTCCTCAGACCTGGACTGCGTATG
GCCGGTAGGCGACGACGTTGCGAGGGCAGCGGCCGGTTTTGAGAAGCGCA
GCTCGTGGAACGTCATCGAGAAAGCGTTCGGAGCGATGGATGGCCTGTTC
ATCCGTCTCATCAAGCCGAACCATCACGAGCATGCCGCCACCAACTCCTT
CTTCAGCGGCCACAAGAAGGCCTTCGGGATGAACTTCCAGGTGAGGACCC
GCAAGCCTCTCCTGCCAAGAAAGCGCGTGCCTTGGTCGACCTACACGAAG
CCAATGCTTGGAGACGGCACCTTCAAGGGGCGCTTTCGCATGGGCCACGA
GGACTTCATGGCTCTGTTGGAGCTTATCCGGGAGGAGCTACAGAGAGATG
AGAAGATGGGCGGGCTGCGCAACGGCGCCATTCCTGTTGAGTACCAACTG
GCGATGACGCTTCGTTGGTTGGCTGGATCGTCGATTTACGAGGGGATGGA
CATGCACGTGATAGCGAGAAGCACGGCGTACAGCATCGTCCACCGCGTCA
TCGACGCTCTGAACGCTTCCTCAGACCTGGACTGCGTATGGCCGGTAGGC
GACGACGTTGCGAGGGCAGCGGCCGGTTTTGAGAAGCGCAGCTCGTGGAA
CGTCATCGAGAAAGCGTTCGGAGCGATGGATGGCCTGTTCATCCGTCTCA
TCAAGCCGAACCATCACGAGCATGCCGCCACCAACTCCTTCTTCAGCGGC
CACAAGAAGGCCTTCGGGATGAACTTCCAG
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