mRNA_L-elsbetiae_contig1793.5129.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1793.5129.1
Unique NamemRNA_L-elsbetiae_contig1793.5129.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1793.5129.1 vs. uniprot
Match: D7FL62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL62_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 6.780e-51
Identity = 119/163 (73.01%), Postives = 127/163 (77.91%), Query Frame = 1 
Query:    1 MKGALAAV--CVALMGA-SNAFVVPGPSAIVSGRSTRASTSQVIVMGRGDTRTAKGKRMRHSYGKRRAPRRQGGGNLRGGRPQKQKEVIYFDGEIVKKAAPVARRWENIEYDEASMPKPAPVEAA---VAEEPEAESAVXXXXXXXXXXXXVEEVAEVSPAAE 471
            M GALA +   VA+M + SNAFVVPGPS +VSGRSTRASTSQVIVMGRGDTRT KGKRMRHSYGK               RPQKQKEV+YF+GEIVKKAAPVARRWENIEYDEASMPKPAPVEAA   V E  EA+SAVXXXXXXXXXXXX     E +PAAE
Sbjct:    1 MHGALATLGLVVAMMASVSNAFVVPGPSQVVSGRSTRASTSQVIVMGRGDTRTTKGKRMRHSYGK--------------CRPQKQKEVVYFEGEIVKKAAPVARRWENIEYDEASMPKPAPVEAAAEEVTEAEEADSAVXXXXXXXXXXXXXVAEEEAAPAAE 149
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1793.5129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL62_ECTSI6.780e-5173.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1793contigL-elsbetiae_contig1793:14077..16752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_005370.1
Exons3
Model size471
Cds size471
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1793.5129.1prot_L-elsbetiae_contig1793.5129.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1793 14077..16752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.7774048-CDS-L-elsbetiae_contig1793:14076..141931622815747.7774048-CDS-L-elsbetiae_contig1793:14076..14193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 14077..14193 +
1691683076.819842-CDS-L-elsbetiae_contig1793:14076..141931691683076.819842-CDS-L-elsbetiae_contig1793:14076..14193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 14077..14193 +
1622815747.7879589-CDS-L-elsbetiae_contig1793:15236..152891622815747.7879589-CDS-L-elsbetiae_contig1793:15236..15289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 15237..15289 +
1691683076.829991-CDS-L-elsbetiae_contig1793:15236..152891691683076.829991-CDS-L-elsbetiae_contig1793:15236..15289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 15237..15289 +
1622815747.8015058-CDS-L-elsbetiae_contig1793:16451..167521622815747.8015058-CDS-L-elsbetiae_contig1793:16451..16752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 16452..16752 +
1691683076.8406897-CDS-L-elsbetiae_contig1793:16451..167521691683076.8406897-CDS-L-elsbetiae_contig1793:16451..16752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 16452..16752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1793.5129.1

>prot_L-elsbetiae_contig1793.5129.1 ID=prot_L-elsbetiae_contig1793.5129.1|Name=mRNA_L-elsbetiae_contig1793.5129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
MKGALAAVCVALMGASNAFVVPGPSAIVSGRSTRASTSQVIVMGRGDTRT
AKGKRMRHSYGKRRAPRRQGGGNLRGGRPQKQKEVIYFDGEIVKKAAPVA
RRWENIEYDEASMPKPAPVEAAVAEEPEAESAVEEAEAEAAPVAAVEEVA
EVSPAAE
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mRNA from alignment at L-elsbetiae_contig1793:14077..16752+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1793.5129.1 ID=mRNA_L-elsbetiae_contig1793.5129.1|Name=mRNA_L-elsbetiae_contig1793.5129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2676bp|location=Sequence derived from alignment at L-elsbetiae_contig1793:14077..16752+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGGAGCTCTCGCGGCCGTCTGTGTTGCCCTCATGGGAGCCTCGAA
CGCTTTCGTCGTGCCAGGGCCGTCGGCGATCGTCTCTGGCCGGTCCACGC
GTGCCTCCACATCCCAGGTACCAAAGTTAGGCTTAGTTCGTCGTTCACAG
AGGGTGTCTAGACTGCTGTCGGCGGGCGTTGCGTGTGTCGGTTGCAGTTC
TTTTTAGGTCTACGTTTGCGGACACCAGTCAGACAGAGACGATCACATGT
TTGTGCATGCGGCAAGTTGATGTGGCCAAGGAAGGGGAGATATAATTAAG
TTCGGGGTGGGAAGGACGTCAGCAGCGGAGGTTTGATTCGTCCTGTCGTG
GAGAACCTGCGGCCCGTCTTGGGCGGTGTGGACACATGCGACAGACGATG
TGGACGAGCGGTGCATATTACTTGGTTTTAGTACAGGCGAGAAGAACATA
CAAAAAAACATGCGTGGCAAACGAACCGAGCGTTGTGTTGGCTGCCTGCT
GCTACTGTGCAGGCATCAACCAAGGCCACTAGTGTTTACGCAGCAGTAAC
AGCACTCGAGTGGCTGCACACGCATGTATCCAGCGTTCTCCCACACATAG
CTTTCGGGTGGGATGCAGTAGATGACGTGATGTTGGAAGGCAGTTCCATA
CTCAAGACCCACGCGTTGACCCGAGAAGCGGCGGTGACGGTTTGTGAAAT
CGTTCAGACCGCACCCAGCCAGCTGTGTGGCATTGGATGGAAACCAAAGA
GACAAAAAATGGTTCCGGTCGCTTTTTTTATTGTGTTTTCTGTGCACGCT
GCGTCTTTCAAGGCTTTTAATTCCAACCACCAGGTATGTATGTAAAAACA
CGCACGTTCGTTTTTTTAATACTCCACATGCTAGGTAAAACTTTTTTCAC
ATCGAAAACCGTTCCGATCTCTCCACCCAGTACCTTCCCTATGGGCGTAC
CTAGGTTACAACTACCCTCCTTTTCCTCACCTCGTGATCGTCACCTCACC
TGTTGCCTGTGTGCAGAACCTAACCTTTATTCCCCCGTTCTCCTGCCCAC
TACTACTACTGTATCGTGCTCGTTGCTGTGTTGCTGTGCCCGTTGCGGTT
GGACGTGGGCTCACACCAACCACATCCCATCCCATCTTGTGTTTTTCTTT
TTTTGGTCAGGTGATCGTGATGGGCAGGGGAGACACTCGCACAGCCAAGG
GCAAGCGCATGAGGTGAGACGGCCAAGGCCAGCTGGGACCGACCATCAGG
GTGTATTGAGTACATTAGAAAATGCATGTGTTGGTTGTTGTTGTTGTTGT
TGTTGTTGCTGATTCACATGAGCTCTCCAGTCCAAAACATCCTTGGGGGG
CCGTGGTCACAAAACGAGGCACACTCGACGTGTTTCCGCATCGTATAGGC
TGACCCCAACTTGACCTCAGCTCGCCATTCCTCGCCCCGCCTTTACCTAC
CTTACCTCCACCCTGTAGTATATGTATACTCCGTATGTATACCGTACAGC
AGTATGTATGTATGTACTTCTATGTAAATAAATATGTGTGTACTCCGGAA
TGTGTACAATACTACAACAATCTAACCTCTTTTCTTTAAGGTACTAAAAT
ACATCAAAGTATCTTTGATGATTTGCGCACATCTTAAAAACGGAAATAGA
GTATATATGGATTGTGTTTGGCACCTTCCTGTGTACATGGCAACTTTGTC
TCCCAAAGAGTTGTCGAAGGCAAGTTGAACTTGACCAAGCAATGCAAACA
AGAAAGACGTTATCTTCGTTGTTGTTTCTCACATAAGCTCTCTACTGTTG
TCCAAAATATTAACACCCATGGGGGCCCGTGGCCACAGGAACAGGGCACA
CTCGACGCCGCTGAAGAAAAAGTAAAATAAAACTATGATACATGGTAAGC
GCCAGGCGATACTAAACTGAATCCCGAAGGGGTCTTGCGTCTCGCTGGCT
CTAAAATAACAGAAGGTAGGGTACACACCACTCGGAGAATATAATACAAT
AAAGCTAGATAAACCAGATACCCACGCCAGGTAGAGGAAAGAGAGCTATC
GAAAGCCGAGGCTTCCCACGCCCGTCTACAATGCCGGGGGGTTCCGTGTC
GGGTTCTCGCCGCTTGTGTGCCCAGCGGTGAAGCGCGGGGCGCGTCTCTC
CCCCGTTCTGCCTGGCGAACACAAGGGCAGCGAGCGTTTGAGGACGTGCT
ATCGTACAGCAGCAGACATGCAGATGCCACCGAATGTGCTGCACTGTTTG
TAAGTTGTACACTCCCAACACACTAAACGATAATAAACACCCCCTGAAAC
GACTTGTTGGCAGACTGGACGTAGACTGCTGACATGTGTCAATAAAAGTC
CCCCCCCCCCCCCAAAAAAAAACAGGCACAGTTACGGCAAGAGGCGGGCG
CCAAGGCGGCAAGGGGGCGGCAACTTGCGCGGGGGCCGGCCCCAGAAGCA
GAAGGAGGTGATCTACTTCGACGGGGAGATCGTCAAGAAGGCGGCCCCCG
TCGCCCGGAGGTGGGAGAACATCGAGTACGACGAGGCGTCCATGCCCAAG
CCCGCGCCGGTCGAGGCGGCGGTGGCGGAGGAGCCGGAGGCCGAGTCGGC
TGTCGAGGAGGCTGAGGCCGAGGCCGCTCCGGTAGCGGCCGTGGAGGAGG
TCGCCGAGGTGTCGCCCGCAGCCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1793:14077..16752+

>mRNA_L-elsbetiae_contig1793.5129.1 ID=mRNA_L-elsbetiae_contig1793.5129.1|Name=mRNA_L-elsbetiae_contig1793.5129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig1793:14077..16752+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGGAGCTCTCGCGGCCGTCTGTGTTGCCCTCATGGGAGCCTCGAA
CGCTTTCGTCGTGCCAGGGCCGTCGGCGATCGTCTCTGGCCGGTCCACGC
GTGCCTCCACATCCCAGATGAAAGGAGCTCTCGCGGCCGTCTGTGTTGCC
CTCATGGGAGCCTCGAACGCTTTCGTCGTGCCAGGGCCGTCGGCGATCGT
CTCTGGCCGGTCCACGCGTGCCTCCACATCCCAGGTGATCGTGATGGGCA
GGGGAGACACTCGCACAGCCAAGGGCAAGCGCATGAGGTGATCGTGATGG
GCAGGGGAGACACTCGCACAGCCAAGGGCAAGCGCATGAGGCACAGTTAC
GGCAAGAGGCGGGCGCCAAGGCGGCAAGGGGGCGGCAACTTGCGCGGGGG
CCGGCCCCAGAAGCAGAAGGAGGTGATCTACTTCGACGGGGAGATCGTCA
AGAAGGCGGCCCCCGTCGCCCGGAGGTGGGAGAACATCGAGTACGACGAG
GCGTCCATGCCCAAGCCCGCGCCGGTCGAGGCGGCGGTGGCGGAGGAGCC
GGAGGCCGAGTCGGCTGTCGAGGAGGCTGAGGCCGAGGCCGCTCCGGTAG
CGGCCGTGGAGGAGGTCGCCGAGGTGTCGCCCGCAGCCGAGGCACAGTTA
CGGCAAGAGGCGGGCGCCAAGGCGGCAAGGGGGCGGCAACTTGCGCGGGG
GCCGGCCCCAGAAGCAGAAGGAGGTGATCTACTTCGACGGGGAGATCGTC
AAGAAGGCGGCCCCCGTCGCCCGGAGGTGGGAGAACATCGAGTACGACGA
GGCGTCCATGCCCAAGCCCGCGCCGGTCGAGGCGGCGGTGGCGGAGGAGC
CGGAGGCCGAGTCGGCTGTCGAGGAGGCTGAGGCCGAGGCCGCTCCGGTA
GCGGCCGTGGAGGAGGTCGCCGAGGTGTCGCCCGCAGCCGAG
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