mRNA_L-elsbetiae_contig1793.5128.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1793.5128.1
Unique NamemRNA_L-elsbetiae_contig1793.5128.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1793.5128.1 vs. uniprot
Match: A0A6H5J616_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J616_9PHAE)

HSP 1 Score: 399 bits (1026), Expect = 3.640e-134
Identity = 190/212 (89.62%), Postives = 203/212 (95.75%), Query Frame = 2 
Query:  245 RMSATAEISSFPYEDVLPFLKEHVQPSDQMLLLGCGTELALQLSRDGYGTRDKRSLMRCIDSDPDLVSAMKAAAEADPVCAKHMASGNLVFEALDVTGGMPELEQSSVDCVVDAGLLDKLVTTQGVDAAKACSDAAHRAVRLGNPLVALSMIDKDDFSQIFDGNWGWMQELDGDPGAVSQWYRDKKVNLKDVGNNFVELGISFFVYTNVDNC 880
            RM+ATAEI SFPYEDVLPFLKEHVQPSDQMLLLGCGTEL LQLSRDGYGTRD RS MRCIDSDPDL++AMK AAEADPVC+K+MA+G L+FEALDV GGMPEL QSS DCV+DAGLLDKL+TT+G+DAAKACSDAAHRAVRLGNPLVALSMI+KDDF+QIFDGNWGWMQELDGDPGAVSQWYRDKKVNLKDVGNNFVELGISFFVYTNVDNC
Sbjct:   77 RMAATAEIGSFPYEDVLPFLKEHVQPSDQMLLLGCGTELPLQLSRDGYGTRDGRSFMRCIDSDPDLIAAMKNAAEADPVCSKNMAAGKLIFEALDVAGGMPELTQSSADCVIDAGLLDKLITTEGLDAAKACSDAAHRAVRLGNPLVALSMINKDDFAQIFDGNWGWMQELDGDPGAVSQWYRDKKVNLKDVGNNFVELGISFFVYTNVDNC 288
[Close]
BLAST of mRNA_L-elsbetiae_contig1793.5128.1 vs. uniprot
Match: A0A835Z3E3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3E3_9STRA)

HSP 1 Score: 229 bits (585), Expect = 4.640e-68
Identity = 114/210 (54.29%), Postives = 147/210 (70.00%), Query Frame = 2 
Query:  254 ATAEISSFPYEDVLPFLKEHVQPSDQMLLLGCGTELALQLSRDGYGTRDKRSLMRCIDSDPDLVSAMKAAAEADPVCAKHMASGNLVFEALDVTGGMPELEQSSVDCVVDAGLLDKLVTTQGVDAAKACSDAAHRAVRLGNPLVALSM-IDKDDFSQIFDGNWGWMQELDGDPGAVSQWYRDKKVNLKDVGNNFVELGISFFVYTNVDNC 880
            A+  +++FPY+ VLPFLKEHVQPSDQ+L+LG    L L LS DGYGTRD RS +  +DSD   + A + AA  +P  A ++A+G L FE  +    M +LEQS VD V+D G++D L++T G  AA    DA HRAVRLGNPL+ LS   DKD F   F+  +GW+QELDGDPGAVS W+RD+K+N+K V N+F  LG+  +VYTNVDNC
Sbjct:   71 ASEGLAAFPYDSVLPFLKEHVQPSDQLLILGARNTLPLLLSADGYGTRDTRSFVLVVDSDAVALEAAQKAAALNPATAANLAAGQLRFELKEDLTAMDDLEQSCVDAVLDNGMIDWLLSTGGEAAAGGMIDAVHRAVRLGNPLICLSSGTDKDTFCSPFESRFGWVQELDGDPGAVSMWHRDQKINMKGVANDFAALGLKMYVYTNVDNC 280
[Close]
BLAST of mRNA_L-elsbetiae_contig1793.5128.1 vs. uniprot
Match: A0A7S2Y0F7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0F7_9STRA)

HSP 1 Score: 176 bits (445), Expect = 9.880e-48
Identity = 93/214 (43.46%), Postives = 129/214 (60.28%), Query Frame = 2 
Query:  251 SATAEISSFPYEDVLPFLKEHVQPSDQMLLLGCGTELALQLSRDGYGTRDKRSLMRCIDSDPDLVSAMKAAAEADPVCAKHMASGNLVFEALDVTGGMPELEQSSVDCVVDAGLLDKLVTTQGVDAAKACSDAAHRAVRLGNPLVALSMIDKDDFSQIFDGNWGWMQELDGDPGAVSQWYRDKKVNLKDVGNN----FVELGISFFVYTNVDNC 880
            S+T   +   Y+  LPFLKEH+   DQ+L+ G G  LA++L  DGYG   K  ++ CID D + V       E  P   K M SG + FE  D      +LEQS VD VVD   +D+L   +G +A     +AAH+AVRLGNPL++LS +D++ ++  F   +GW++ELDGDP AVS WYRD+  N  +VG N    FV+ G+  +VY+N+DNC
Sbjct:   51 SSTLTEADLDYDAALPFLKEHLTKHDQLLIFGTGDGLAIRLLEDGYGLEGKGDVI-CIDYDEEKVKTAITTVEGIPALKKDMDSGKIRFEC-DPFTSFDKLEQSCVDAVVDFAAIDRLYDERGEEAVSDIIEAAHKAVRLGNPLISLSKLDQETYTSFFGSKFGWVEELDGDPTAVSMWYRDQGTN-SNVGKNDASDFVQRGLKLYVYSNLDNC 261
[Close]
BLAST of mRNA_L-elsbetiae_contig1793.5128.1 vs. uniprot
Match: A0A7S0SVS2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SVS2_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.800e-39
Identity = 84/207 (40.58%), Postives = 122/207 (58.94%), Query Frame = 2 
Query:  266 ISSFPYEDVLPFLKEHVQPSDQMLLLGCGTELALQLSRDGYGTRDKRSLMRCIDSDPDLVSAMKAAAEADPVCAKHMASGNLVFEALDVTGGMPELEQSSVDCVVDAGLLDKLVTTQGVDAAKACS---DAAHRAVRLGNPLVALSMIDKDDFSQIFDGNWGWMQELDGDPGAVSQWYRDKKVNLKDVGNNFVELGISFFVYTNVDN 877
            I   PY D++PFL EH+Q SDQ+L LG  T+++L L +DGYGT+     +  ID++  LV+ +      D    K++ +  L    +D +      +QS+ D +VD GLLD ++ +   D  K      D    AVRLGN L+ LS IDK+ F + F+  +GW+QELDGDPG +SQWYR K  N++   +NF + G+  +VYTN DN
Sbjct:   29 IVKSPYSDIIPFLSEHIQLSDQILFLGASTDMSLSLLKDGYGTK-LTGRLTVIDNNNALVNDLNKVVSNDIDLKKYLGN-RLSIHKVDESNLSSICKQSTFDSIVDYGLLDSILLSDKPDKYKTFLNYIDNLQNAVRLGNILICLSTIDKEIFCKPFEERFGWVQELDGDPGEISQWYRGK-TNIQATASNFKKHGLKMYVYTNTDN 232
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1793.5128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J616_9PHAE3.640e-13489.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z3E3_9STRA4.640e-6854.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2Y0F7_9STRA9.880e-4843.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0SVS2_9STRA2.800e-3940.58Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1793contigL-elsbetiae_contig1793:8333..13827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_005360.1
Exons6
Model size1584
Cds size852
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1793.5128.1prot_L-elsbetiae_contig1793.5128.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1793 9034..13796 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.6643245-UTR-L-elsbetiae_contig1793:8332..90331622815747.6643245-UTR-L-elsbetiae_contig1793:8332..9033Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1793 8333..9033 -
1691683076.7289538-UTR-L-elsbetiae_contig1793:8332..90331691683076.7289538-UTR-L-elsbetiae_contig1793:8332..9033Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1793 8333..9033 -
1622815747.7465227-UTR-L-elsbetiae_contig1793:13796..138271622815747.7465227-UTR-L-elsbetiae_contig1793:13796..13827Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1793 13797..13827 -
1691683076.8088243-UTR-L-elsbetiae_contig1793:13796..138271691683076.8088243-UTR-L-elsbetiae_contig1793:13796..13827Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1793 13797..13827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.677893-CDS-L-elsbetiae_contig1793:9033..91801622815747.677893-CDS-L-elsbetiae_contig1793:9033..9180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 9034..9180 -
1691683076.737913-CDS-L-elsbetiae_contig1793:9033..91801691683076.737913-CDS-L-elsbetiae_contig1793:9033..9180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 9034..9180 -
1622815747.6919944-CDS-L-elsbetiae_contig1793:9678..97981622815747.6919944-CDS-L-elsbetiae_contig1793:9678..9798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 9679..9798 -
1691683076.748588-CDS-L-elsbetiae_contig1793:9678..97981691683076.748588-CDS-L-elsbetiae_contig1793:9678..9798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 9679..9798 -
1622815747.7029035-CDS-L-elsbetiae_contig1793:10901..110131622815747.7029035-CDS-L-elsbetiae_contig1793:10901..11013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 10902..11013 -
1691683076.7573395-CDS-L-elsbetiae_contig1793:10901..110131691683076.7573395-CDS-L-elsbetiae_contig1793:10901..11013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 10902..11013 -
1622815747.7133384-CDS-L-elsbetiae_contig1793:11409..115171622815747.7133384-CDS-L-elsbetiae_contig1793:11409..11517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 11410..11517 -
1691683076.7661738-CDS-L-elsbetiae_contig1793:11409..115171691683076.7661738-CDS-L-elsbetiae_contig1793:11409..11517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 11410..11517 -
1622815747.724078-CDS-L-elsbetiae_contig1793:12747..128781622815747.724078-CDS-L-elsbetiae_contig1793:12747..12878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 12748..12878 -
1691683076.775244-CDS-L-elsbetiae_contig1793:12747..128781691683076.775244-CDS-L-elsbetiae_contig1793:12747..12878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 12748..12878 -
1622815747.7360153-CDS-L-elsbetiae_contig1793:13562..137961622815747.7360153-CDS-L-elsbetiae_contig1793:13562..13796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 13563..13796 -
1691683076.7935479-CDS-L-elsbetiae_contig1793:13562..137961691683076.7935479-CDS-L-elsbetiae_contig1793:13562..13796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1793 13563..13796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1793.5128.1

>prot_L-elsbetiae_contig1793.5128.1 ID=prot_L-elsbetiae_contig1793.5128.1|Name=mRNA_L-elsbetiae_contig1793.5128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=284bp
MTSALSGIGRWGLVVAAVSLRSFSVDSFFVGSASTAQRVNAFDRSSSRGQ
QQQQQKQQQRETGCRSSLPEDRMSATAEISSFPYEDVLPFLKEHVQPSDQ
MLLLGCGTELALQLSRDGYGTRDKRSLMRCIDSDPDLVSAMKAAAEADPV
CAKHMASGNLVFEALDVTGGMPELEQSSVDCVVDAGLLDKLVTTQGVDAA
KACSDAAHRAVRLGNPLVALSMIDKDDFSQIFDGNWGWMQELDGDPGAVS
QWYRDKKVNLKDVGNNFVELGISFFVYTNVDNC*
back to top

mRNA from alignment at L-elsbetiae_contig1793:8333..13827-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1793.5128.1 ID=mRNA_L-elsbetiae_contig1793.5128.1|Name=mRNA_L-elsbetiae_contig1793.5128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5495bp|location=Sequence derived from alignment at L-elsbetiae_contig1793:8333..13827- (Laminarionema elsbetiae ELsaHSoW15)
ATTCTACTTCCACACTGACTACGCTTGCAAAATGACCTCCGCTCTCAGCG
GAATAGGGCGATGGGGCTTGGTAGTAGCTGCCGTGAGCCTTCGTAGCTTC
AGTGTGGATAGTTTCTTCGTGGGATCGGCGTCAACGGCGCAGCGGGTCAA
CGCGTTTGATCGATCATCCTCGCGAGGGCAGCAGCAGCAGCAACAGAAGC
AGCAGCAGCGAGAGACGGGATGCCGATCATCACTTCCAGAGGATAGGATG
TCAGCCACCGCAGAGGTAAGATCTGCAAAACGTGCTCTGCCGCGAAGCAG
CTAGGAGCCGGTGGGGTAGTGCAGGGTTGTTGTTCCTTCACTTGCATGTT
CAACTTTCGATCGTTTTCTCTTCATGTGTCGAACACATGCCATTCATCAC
ACCACACATGTTTGCATGGCCTGGTCCATGCTGATGCACACATACAGCTG
CGCCGTTGCTGTTGTTGCTGATGTTGTGGTGCGTCGGTGGCTGAGACGGT
GTTGGTACACATATATGTACATGCGCGGCAGACGGTGCTTGCTATGTAGG
CGCTCTCTTCCCGCCCCTCCCACCGCGCCGTGTGTGGTCTCTGCAGTAGC
AGTACAGCAGCAGTAGCAGCGATCGGGTGGCAAGAGTATCAGGCTAGACT
GTCACCACCAGAACTAGCAGATACACATACATACACACTTCCTCCGCCAT
TTGTGCGCACTGCACATGGTAAATGAACTTGCTGCCACCGTCGTGCTGAC
TGCTGCACGCTCCCTGTGCACGCGCTGCCGGCCCAGGATAGTCTAATCTA
AATTACTAATCTATCTACTTGTAGAGCACACACGGTTGACATATTTAACG
TCCATTCTCGCGCTTATTGCCTTATTTTTGAACATCTTACGGTCCTTGGC
GTATATTGCTGTGGTTATGCTCCGCCGGCACGGCACCCGCCAAAAGCAGA
TCAGCTCCTTCCCTTACGAGGACGTGCTTCCGTTCCTGAAGGAGCATGTG
CAGCCCTCTGACCAGATGTTGCTGCTCGGGTGTGGAACGGAGCTCGCCTT
ACAGCTCTCCCGGGACGGCTACGGCACAAGGTGATATGCTATGGGTATTA
CTATGTATAGAAGCTATTGTAGGTTGACTCCCCAAATAGTCGAAAACCAC
CCTGGAGAACCAGAGGGTTCAAAAAGCTGGATGGCATTTTTCCTCACCGG
GGCTGATTTTTGGAGGCTGCTGACGGGCACACAGAACCCACCTAAGACCA
CAACAGCGAGCTTGTCTCACCCTCGGTAATAAAGAGATGGGATAGGCTAA
CACTATCATAATAAAGCACAAGGTGATATGCCTGTCTGCCCTCGTGCTGG
CACGGGGAATTGCGTTGCCGGTGTGCTGTTCGTCGTCTCGGGGACACACG
CACTCGTCGTCAAGAGTTGGCGAAGGCATAAACAACAATTAAAAATCGCA
GTGTTGGTCCCACGTGTGTTCGCAGCGCCAAAGCCATTTTTCCAAGCTCC
CATGAAGATCTTATTTTGTTGTTAGATTGATTCCGGCGCTGGGCTCTGCC
GTAAAAACAACGGCGGGAAAAAACTGGAGGCAGGGAAAATTATAAAATGG
TGCGCTCTGGTCTGCACGGCGCATTGTAAAAACCGACTCGAGGGCTCCCT
AGCGCAGTAGCCTTCGCACGTTTTACTGGAAGAAATCATATGGGATGAAG
TATGGAAACGGCTTATGGGGGGTCGGTTTGGGGTTAGGGTTAGGGTTAGG
TTACGGAGCCCCTGTCTATTGTTTCCTATACAGACAGGAAATACAGGAAT
TCCTCACGAGAGCGTTCCCCCTAGCGCTGCTTGCATGATATGTACGTGGC
CAGCTCTGCAGACAGAGGTGTGCAGTCGGCCTGTGCGAGAAGTCATTCCG
CTTATTTAAGAAAAAATAAAAAACAATGAATCAAAGACGGAACCTACCCC
ACACTACTAGAGCAAGGACTCGATATGGGGTTCAAACGGTATTCCATACA
GTAGTGACGAAATATTTGGCGAAGCGAGCAGAAAACGACCTAAAATATTA
GAAGAGTTCAACATCACCCCTGCAAAGATTTGCGTTTTTCCTCCACAGCA
GCAGTATGTAACACTTCGAAGCACCGCCCCGCTCTCCCGGAGGCTCGACG
ATCTCGACGTCGAACGCGTGTGATCTGACCTATTCTCCTCCCGTGTTTTG
TTTTTTCTCTCTTGTCGTGGTTTTGGCGCTCTTTTTGTCGTTGTGCCTCG
CGCTGCCCATGTGTGGTGCGGTGGCCATGTCATGCCATGCCGTGTCACGT
CATGTGTCAGAGATAAGCGATCGTTGATGCGCTGCATTGACTCAGACCCG
GACTTGGTTTCGGCCATGAAGGCTGCAGCGGAGGCCGACCCTGTCTGCGC
CAAGCACATGGCCAGCGGGTAAGCTTGAGAGAGAGGGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGGAATACTCGCTGAGACAGAGAGAGAGA
CAGATACCAAGAAATCCTCTCGGGGCGCCTTTCAGCTCGGCGCATAGGCA
TCGATACTTCGCCTTGCTCGTTCACGTAGTTGCGGCTCTTTCTGCGGGTT
TCTGGCTTTGCTTGCCCTGGCTGCTCTTGTGCTGGCGCTTCCGCGGCTGC
TGTCTTCCTGGCTTGCTTGATTGTTACTTCATATGTGTACGTGTGCTGTC
TCTCGTTCCCGATGTCGTGACGCCTCGGGTGTCGTGTTGTGTCCCTGTCG
TACATCCCTGCCTCGGCCGCCTCGCAACGCCCCACTCAACCCACTGCCGC
CGATGCTGCCAAAGGAACTTGGTTTTCGAGGCGTTGGATGTTACGGGGGG
CATGCCGGAGCTCGAGCAGTCTTCCGTCGACTGTGTGGTGGACGCGGGCC
TCCTGGACAAGCTCGTCACGACCCAGGTAAGAGTAAGCGCAAGGGTAAGA
AGGGTGAGGCAAGGTGAATTTTGGCTTGCTCTATGTAGTCAGTCGCACGT
CGAATCCGCTGCTTTGCCGTGCGCGCTCGTTGGGTGTCCAAACAATAATA
ACTCCCTCGGTTTTGGACACCTTTCGACGGCATGCCACAGCGCACCGGAG
CAGTGCAATTATTGTTTTGGGCTTACTCGGCGTACTGATTTGGCGGCGTG
ACTTGTTCACCGTGATATCGTTTTTGTTGCAAGTATCAGGGCGGGAGGGA
AGTGCCGGCAGGACTTTTATCCCCTGAAAAAGCCGGATGGCCAACTTTCG
CCGGGCTATTGTACCGGATTGGGCACATGAGGGGGGGGGGGGGGTTGCTC
TGTAAGCACCCGTGTGTGCATGAATGCCAAAACTGATTCGGCGCCGTCGT
ATCGGGGCATACGTTACATTCGCGGCTAAAACGCTTGCGAGGGCGATTCA
TTGTGTAGACATGCTTTCACGACGACGCCACCTTCCATGCGCCCTCTGTG
TTTCCTCTCTCTCTCTCGTCGTCCTCGCCGCCTTTTCTCTCTCGTTGTAC
GTGTTATGTCGCATAACGGCTGAGCAACCCGCGACGCACGTTTTAAAAAT
AAACAATGAATCACAGATGAACCTACCCCACACTAGAGCAAGGACTCGAT
ATGGGGTTCAAACGGTATTCCTATGCAGAGACATAATATTTGGCGAAGCG
AGCAGAAAAACAACCTAAAATATCAGAAGAGTTCAACATCTCCCATGCAA
AGATTTAAGATTTTGCGAGGTCGGCCAACAATTATTCAGGCGGGTAGAGC
CCGCCGTGATGCCGTAATGTTGTCATCTACACCAACTGACAGCTAAAAAC
ACATGCATATGTGTACCAGCATGCAGAACGCGTCTGTGTTATAAACCCGG
GTCGTCTTTCTTTTTCTTGCCCTATGTTTTTTTTTTTTTTATCATCGTCA
AAGTTGCGCGTGTGTCTATGGCGTCCGTCCATATGTCTACAACATATGGT
AGCAAGGAGCCATGTTGATCATTTCGTTTTGCTTTCGCTTCGCTTGCGTT
GTTGTGGTGTTGCGTCTACATCTGAATAGGGAGTCGACGCTGCGAAGGCG
TGCTCGGATGCCGCACATCGAGCTGTCCGCCTCGGAAACCCTTTGGTAGC
GTTGTCCATGATCGACAAGGACGACTTCTCGCAGATCTTCGACGGGAATG
TGAGGAGCCCTAAGTTACTCCTAGGAATACGAAGACCCCTCTGGTCGTCG
GCGCTGTCTGCTTGTGATTGTGTGGCGTGTAGACAGGGCCTTATGAATGT
CTCGCGGTTTTCTGCCGCCGCTGGTGCGGATCCGAATCCGACGAAACCCT
GGGCCAGCTGCAATCTTCGGCGCCGCACTCATGTCGGCACAAATGTAGCC
AAATCTACACTCCTTCTCTCGTTACGCATGTAAGTATCTCGGCCTTATGA
TATGCTTGATTCGCTTTGGCTGGGGCTGCTGTCCCACCTTTTTTTTTGCA
TCCGTCTTACGCTCCCCCCCCCCCCCCCCCCTTTTTCTTTATTTTTTGGC
AAGGGGGGGGGGGTGCAAGGGGTGGGCGGGGNNNNNNNNNNTTTTTGCCT
TTTTTCCTTTTGGGGGGGGGGCCTCCCCCCCTTTTTTTTTTCTCCCCCCT
TCCCCCCCCCCCCCCCCCCCCCTCGTTTTTCTTAATTTGTGTGCAAGTGG
GGGTGGATGCAAGAGCTGGACGGGGACCCCGGAGCGGTGAGCCAGTGGTA
CCGGGACAAGAAGGTCAACCTTAAGGACGTCGGCAATAACTTCGTGGAGC
TGGGCATATCCTTCTTCGTCTACACCAACGTCGACAACTGCTAGTCTGAA
GGCCGCTACTAAAATAGCAATTTTGAGCTGGGCTTTCTCGCCTTGAATAT
GTAGATCAATCTGATAGCGTTTGGACTACAACGGCGTCCGGCTGAGTCTT
CCTGGCCTGAGAACTGATACATAATGACGTCACCGTACCGCATTTTGGGG
GCAGGCTTGTTTCGTGTATTCCGGGGGCGGCCTGCTGCATGGTACGGTCC
TGTCTGGTGTACTCTGTGGTACGGTGGTAGAATTTTAATTATTGGCTATT
TAGACTGCAGCATCACCGACAGGGCTCTCTCCGATGTAGATTGGCTCAGA
GAGTGTACTTTGCCATCTGTGCGTGCAGCGAGAAATTTTGCTGTGCCGTC
AAAACCCGTGCAGAGTTGGCGGGATTGTTGTTGTGTGTGGCGTTGCAAGA
TGGCAAGGTTGGTGAGAGGTGATGTGTGGTTCTTTGATTCCGTTAAAAAA
TGTTTTCGCCGGGATGGCGTATCGGCATGGACCTCGTGGCGTCCGGCATG
GAAGACGAAAAATTCGGGGACAAGTGGGATATACCACGAGAGCCACGGAC
GGAGAATGAGTGGTACGGCGGCACGATTGATGAAGACGTGGCACGGACGG
GAAGCAGAAGTGCTGCCAACTTGCAAAGAATGAAGAGGCGGAGTGAAACA
CCTGCTTGTTTTTTGGCCCAAGAGAAAGGGAAGCGAACGGGGGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1793:8333..13827-

>mRNA_L-elsbetiae_contig1793.5128.1 ID=mRNA_L-elsbetiae_contig1793.5128.1|Name=mRNA_L-elsbetiae_contig1793.5128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1704bp|location=Sequence derived from alignment at L-elsbetiae_contig1793:8333..13827- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCTCCGCTCTCAGCGGAATAGGGCGATGGGGCTTGGTAGTAGCTGC
CGTGAGCCTTCGTAGCTTCAGTGTGGATAGTTTCTTCGTGGGATCGGCGT
CAACGGCGCAGCGGGTCAACGCGTTTGATCGATCATCCTCGCGAGGGCAG
CAGCAGCAGCAACAGAAGCAGCAGCAGCGAGAGACGGGATGCCGATCATC
ACTTCCAGAGGATAGGATGTCAGCCACCGCAGAGATGACCTCCGCTCTCA
GCGGAATAGGGCGATGGGGCTTGGTAGTAGCTGCCGTGAGCCTTCGTAGC
TTCAGTGTGGATAGTTTCTTCGTGGGATCGGCGTCAACGGCGCAGCGGGT
CAACGCGTTTGATCGATCATCCTCGCGAGGGCAGCAGCAGCAGCAACAGA
AGCAGCAGCAGCGAGAGACGGGATGCCGATCATCACTTCCAGAGGATAGG
ATGTCAGCCACCGCAGAGATCAGCTCCTTCCCTTACGAGGACGTGCTTCC
GTTCCTGAAGGAGCATGTGCAGCCCTCTGACCAGATGTTGCTGCTCGGGT
GTGGAACGGAGCTCGCCTTACAGCTCTCCCGGGACGGCTACGGCACAAGA
TCAGCTCCTTCCCTTACGAGGACGTGCTTCCGTTCCTGAAGGAGCATGTG
CAGCCCTCTGACCAGATGTTGCTGCTCGGGTGTGGAACGGAGCTCGCCTT
ACAGCTCTCCCGGGACGGCTACGGCACAAGAGATAAGCGATCGTTGATGC
GCTGCATTGACTCAGACCCGGACTTGGTTTCGGCCATGAAGGCTGCAGCG
GAGGCCGACCCTGTCTGCGCCAAGCACATGGCCAGCGGAGATAAGCGATC
GTTGATGCGCTGCATTGACTCAGACCCGGACTTGGTTTCGGCCATGAAGG
CTGCAGCGGAGGCCGACCCTGTCTGCGCCAAGCACATGGCCAGCGGGAAC
TTGGTTTTCGAGGCGTTGGATGTTACGGGGGGCATGCCGGAGCTCGAGCA
GTCTTCCGTCGACTGTGTGGTGGACGCGGGCCTCCTGGACAAGCTCGTCA
CGACCCAGGAACTTGGTTTTCGAGGCGTTGGATGTTACGGGGGGCATGCC
GGAGCTCGAGCAGTCTTCCGTCGACTGTGTGGTGGACGCGGGCCTCCTGG
ACAAGCTCGTCACGACCCAGGGAGTCGACGCTGCGAAGGCGTGCTCGGAT
GCCGCACATCGAGCTGTCCGCCTCGGAAACCCTTTGGTAGCGTTGTCCAT
GATCGACAAGGACGACTTCTCGCAGATCTTCGACGGGAATGGAGTCGACG
CTGCGAAGGCGTGCTCGGATGCCGCACATCGAGCTGTCCGCCTCGGAAAC
CCTTTGGTAGCGTTGTCCATGATCGACAAGGACGACTTCTCGCAGATCTT
CGACGGGAATTGGGGGTGGATGCAAGAGCTGGACGGGGACCCCGGAGCGG
TGAGCCAGTGGTACCGGGACAAGAAGGTCAACCTTAAGGACGTCGGCAAT
AACTTCGTGGAGCTGGGCATATCCTTCTTCGTCTACACCAACGTCGACAA
CTGCTAGTGGGGGTGGATGCAAGAGCTGGACGGGGACCCCGGAGCGGTGA
GCCAGTGGTACCGGGACAAGAAGGTCAACCTTAAGGACGTCGGCAATAAC
TTCGTGGAGCTGGGCATATCCTTCTTCGTCTACACCAACGTCGACAACTG
CTAG
back to top