mRNA_L-elsbetiae_contig17928.5126.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17928.5126.1
Unique NamemRNA_L-elsbetiae_contig17928.5126.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17928.5126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17928contigL-elsbetiae_contig17928:2832..3241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size410
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17928.5126.1prot_L-elsbetiae_contig17928.5126.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17928 2881..3189 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.4647138-UTR-L-elsbetiae_contig17928:2831..28801622815747.4647138-UTR-L-elsbetiae_contig17928:2831..2880Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17928 2832..2880 +
1691683076.5882375-UTR-L-elsbetiae_contig17928:2831..28801691683076.5882375-UTR-L-elsbetiae_contig17928:2831..2880Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17928 2832..2880 +
1622815747.4988253-UTR-L-elsbetiae_contig17928:3189..32411622815747.4988253-UTR-L-elsbetiae_contig17928:3189..3241Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17928 3190..3241 +
1691683076.61155-UTR-L-elsbetiae_contig17928:3189..32411691683076.61155-UTR-L-elsbetiae_contig17928:3189..3241Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17928 3190..3241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.4828534-CDS-L-elsbetiae_contig17928:2880..31891622815747.4828534-CDS-L-elsbetiae_contig17928:2880..3189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17928 2881..3189 +
1691683076.6005824-CDS-L-elsbetiae_contig17928:2880..31891691683076.6005824-CDS-L-elsbetiae_contig17928:2880..3189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17928 2881..3189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17928.5126.1

>prot_L-elsbetiae_contig17928.5126.1 ID=prot_L-elsbetiae_contig17928.5126.1|Name=mRNA_L-elsbetiae_contig17928.5126.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MPYLQQFCRHTTWKRLYCTPVRLILLSIRLILHTPFFVDTRHGSTCAVLP
PHKWTCLPYLQRRHACTACPPHTYHHRSHRNNNQLRTGNAFPRIPFSKHK
WT*
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mRNA from alignment at L-elsbetiae_contig17928:2832..3241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17928.5126.1 ID=mRNA_L-elsbetiae_contig17928.5126.1|Name=mRNA_L-elsbetiae_contig17928.5126.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=410bp|location=Sequence derived from alignment at L-elsbetiae_contig17928:2832..3241+ (Laminarionema elsbetiae ELsaHSoW15)
ACGACATGGAAGCACCTGTGCTGTACTCCCGCCACACAAATGGACACATA
TGCCCTACTTGCAACAATTTTGTCGACACACGACATGGAAGCGTCTTTAT
TGCACTCCCGTACGCCTGATCCTGCTTTCGATACGCCTGATACTGCATAC
CCCGTTTTTTGTCGACACACGACATGGAAGCACCTGTGCTGTACTCCCGC
CACACAAATGGACATGTCTGCCCTATTTGCAACGTAGACACGCCTGTACT
GCATGTCCCCCTCATACATATCATCATCGGTCGCATCGAAATAACAACCA
ACTCAGAACTGGAAACGCCTTCCCACGAATCCCTTTCAGCAAACATAAAT
GGACATGACTGCCCTATTTGCAACGTAGACACGCCCGTACTGCATGTCCC
CCTCATAAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17928:2832..3241+

>mRNA_L-elsbetiae_contig17928.5126.1 ID=mRNA_L-elsbetiae_contig17928.5126.1|Name=mRNA_L-elsbetiae_contig17928.5126.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig17928:2832..3241+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCTACTTGCAACAATTTTGTCGACACACGACATGGAAGCGTCTTTA
TTGCACTCCCGTACGCCTGATCCTGCTTTCGATACGCCTGATACTGCATA
CCCCGTTTTTTGTCGACACACGACATGGAAGCACCTGTGCTGTACTCCCG
CCACACAAATGGACATGTCTGCCCTATTTGCAACGTAGACACGCCTGTAC
TGCATGTCCCCCTCATACATATCATCATCGGTCGCATCGAAATAACAACC
AACTCAGAACTGGAAACGCCTTCCCACGAATCCCTTTCAGCAAACATAAA
TGGACATGAATGCCCTACTTGCAACAATTTTGTCGACACACGACATGGAA
GCGTCTTTATTGCACTCCCGTACGCCTGATCCTGCTTTCGATACGCCTGA
TACTGCATACCCCGTTTTTTGTCGACACACGACATGGAAGCACCTGTGCT
GTACTCCCGCCACACAAATGGACATGTCTGCCCTATTTGCAACGTAGACA
CGCCTGTACTGCATGTCCCCCTCATACATATCATCATCGGTCGCATCGAA
ATAACAACCAACTCAGAACTGGAAACGCCTTCCCACGAATCCCTTTCAGC
AAACATAAATGGACATGA
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