mRNA_L-elsbetiae_contig17926.5124.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17926.5124.1
Unique NamemRNA_L-elsbetiae_contig17926.5124.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17926.5124.1 vs. uniprot
Match: A0A6H5KQ06_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ06_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.090e-13
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 3 
Query:    3 YNFITGPRRFARPLITLQKEQWADDRNLLYIAPYADDGRTAFCTTDAPPPESTDVSCPEDIDIPHDDDVLVRETPQNRGDDVIVEASDLEGFLSNME 293
            YN+ TG RRF  PL TL K Q+    N+LY+AP+ADDGR      D+   +S+     ED     D+ V+VRETP  RG+D+I++ ++L  FL NM+
Sbjct:  370 YNYATGVRRFGHPLATLHKSQFHHRGNMLYVAPWADDGRPDLMPRDSIEEDSSS----ED----EDNGVIVRETPFQRGEDLIIDETELPTFLDNMD 458
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BLAST of mRNA_L-elsbetiae_contig17926.5124.1 vs. uniprot
Match: A0A6H5L1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.560e-10
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 3 
Query:    3 YNFITGPRRFARPLITLQKEQWADDRNLLYIAPYADDGRTAFCTTDAPPPESTDVSCPEDIDIPHDDDVLVRETPQNRGDDVIVEASDLEGFLSNM 290
            ++F TG  RFA P++ ++ E++ + R + YIAP+A  G+        P    TD+S PE +    D+++LV ETP +R DDVIVEASDLE +L++M
Sbjct:   56 FSFATGTFRFAEPILNVRNEEFTNKRIIAYIAPFA--GKLF-----PPGRGKTDLSGPE-VSNEGDEEILVCETPFDRPDDVIVEASDLEEYLNDM 143
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BLAST of mRNA_L-elsbetiae_contig17926.5124.1 vs. uniprot
Match: A0A6H5K2G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2G7_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.180e-9
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 3 
Query:    9 FITGPRRFARPLITLQKEQWADDRNLLYIAPYADDGRTAFCTTDAPPPESTDVSCPEDIDIPHDDDVLVRETPQNRGDDVIVEASDLEGFLSNM 290
            F TG  RFA P++ ++ E++ + R + YIAP+A  G+        P    TD+S PE +    D+++ VRETP +R DDVIVEAS LE +L+NM
Sbjct:   94 FATGTLRFAEPILNVRNEEFTNKRIIAYIAPFA--GKLF-----PPGRGKTDLSDPE-VSNEGDEEIRVRETPFDRPDDVIVEASGLEEYLNNM 179
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BLAST of mRNA_L-elsbetiae_contig17926.5124.1 vs. uniprot
Match: A0A6H5KMT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMT9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 4.890e-6
Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 3 
Query:    3 YNFITGPRRFARPLITLQKEQWADDRNLLYIAPYADD----GRTAFCTTDAPPPESTDVSCPEDIDIPHDDDVLVRETPQNRGDDVIVEASDLEGF 278
            + F TG  R A P++ + K+ +     + +IAP+A      GR             TD+S PE +    D+++LVRETP +R DDVIVEASDL+ F
Sbjct:   55 FEFATGQFRLAEPILRVPKKDFTKKSIVTHIAPFAGKFFPHGRG-----------KTDLSGPE-VSNEGDEEILVRETPFDRPDDVIVEASDLDDF 138
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17926.5124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KQ06_9PHAE7.090e-1344.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1F4_9PHAE1.560e-1042.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2G7_9PHAE1.180e-943.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMT9_9PHAE4.890e-638.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17926contigL-elsbetiae_contig17926:1573..2492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size729
Cds size381
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17926.5124.1prot_L-elsbetiae_contig17926.5124.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17926 1919..2492 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.3419726-UTR-L-elsbetiae_contig17926:1572..19181622815747.3419726-UTR-L-elsbetiae_contig17926:1572..1918Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17926 1573..1918 -
1691683076.5126534-UTR-L-elsbetiae_contig17926:1572..19181691683076.5126534-UTR-L-elsbetiae_contig17926:1572..1918Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17926 1573..1918 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.35412-CDS-L-elsbetiae_contig17926:1918..21911622815747.35412-CDS-L-elsbetiae_contig17926:1918..2191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17926 1919..2191 -
1691683076.5222263-CDS-L-elsbetiae_contig17926:1918..21911691683076.5222263-CDS-L-elsbetiae_contig17926:1918..2191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17926 1919..2191 -
1622815747.365629-CDS-L-elsbetiae_contig17926:2384..24921622815747.365629-CDS-L-elsbetiae_contig17926:2384..2492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17926 2385..2492 -
1691683076.5316594-CDS-L-elsbetiae_contig17926:2384..24921691683076.5316594-CDS-L-elsbetiae_contig17926:2384..2492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17926 2385..2492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17926.5124.1

>prot_L-elsbetiae_contig17926.5124.1 ID=prot_L-elsbetiae_contig17926.5124.1|Name=mRNA_L-elsbetiae_contig17926.5124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
CTTSSQDPAASHALSSPYRRSSGPTTGTSSTLRRTPMTAAPPSAPPTPPP
RRARTFPARRTSTSPTTTMSSSGRPLRTAATMSSSKRATSRAFSPTWSRA
TRPMCFIANTWFKSPAVFPSCSGGDV*
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mRNA from alignment at L-elsbetiae_contig17926:1573..2492-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17926.5124.1 ID=mRNA_L-elsbetiae_contig17926.5124.1|Name=mRNA_L-elsbetiae_contig17926.5124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=920bp|location=Sequence derived from alignment at L-elsbetiae_contig17926:1573..2492- (Laminarionema elsbetiae ELsaHSoW15)
TGTACAACTTCATCACAGGACCCCGCCGCTTCGCACGCCCTCTCATCACC
CTACAGAAGGAGCAGTGGGCCGACGACAGGAACCTCCTCTACATTGCGCC
GTACGCCGGTACGTTTGTGCTGTGACACCTAATCTGTCCTTCAAACGTGT
GGTATCTTGTGTCTCATAGGCATACGACGTCCTGCAGCGTCATAATTCAT
AATTCACCGCCTCGACAAGGCTCTCTCGTAAAGCCACCGCCCAACTCCCG
TTCAACTTCATCAATTCACGAATGCCTTTTGCCCCCCCTTGACCAAAGCA
GATGACGGCCGCACCGCCTTCTGCACCACCGACGCCCCCCCCCCGGAGAG
CACGGACGTTTCCTGCCCGGAGGACATCGACATCCCCCACGACGACGATG
TCCTCGTCCGGGAGACCCCTCAGAACCGCGGCGACGATGTCATCGTCGAA
GCGAGCGACCTCGAGGGCTTTCTCTCCAACATGGAGTAGAGCAACGAGGC
CTATGTGCTTCATCGCAAACACATGGTTCAAATCGCCCGCGGTCTTCCCA
AGTTGCAGTGGTGGGGATGTTTAGCTTGGTTGGTACGCACGCACTCCCGG
CATTGTTGTCCAGCGTTGTCCCTATATTCTCGCAAGTTTTGAGGGAAATG
TATTAGGTTGATGAGAATTACCAGTTTTAAGGGTGTGATGCCACATCATT
GTTTTGGGAACTTTTCGTGTTTATTGGTTGTCATGGGGCACACACTTTTT
GGTGAAACGGTTCCTGGCTATACTTGGCTCTCGGGCCACTGCCGCTCAGT
CTGCATTCAAGCCTTTTTTCTTGCCGTTTGTTGTATTTTAACCCCCCCCC
CCCACACACACACAATCCCGCACTGCACCCCTGGAGTAAGTGCGGCGCGG
GTTGAAAGGATGCCTGGTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17926:1573..2492-

>mRNA_L-elsbetiae_contig17926.5124.1 ID=mRNA_L-elsbetiae_contig17926.5124.1|Name=mRNA_L-elsbetiae_contig17926.5124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig17926:1573..2492- (Laminarionema elsbetiae ELsaHSoW15)
TGTACAACTTCATCACAGGACCCCGCCGCTTCGCACGCCCTCTCATCACC
CTACAGAAGGAGCAGTGGGCCGACGACAGGAACCTCCTCTACATTGCGCC
GTACGCCGTGTACAACTTCATCACAGGACCCCGCCGCTTCGCACGCCCTC
TCATCACCCTACAGAAGGAGCAGTGGGCCGACGACAGGAACCTCCTCTAC
ATTGCGCCGTACGCCGATGACGGCCGCACCGCCTTCTGCACCACCGACGC
CCCCCCCCCGGAGAGCACGGACGTTTCCTGCCCGGAGGACATCGACATCC
CCCACGACGACGATGTCCTCGTCCGGGAGACCCCTCAGAACCGCGGCGAC
GATGTCATCGTCGAAGCGAGCGACCTCGAGGGCTTTCTCTCCAACATGGA
GTAGAGCAACGAGGCCTATGTGCTTCATCGCAAACACATGGTTCAAATCG
CCCGCGGTCTTCCCAAGTTGCAGTGGTGGGGATGTTTAGATGACGGCCGC
ACCGCCTTCTGCACCACCGACGCCCCCCCCCCGGAGAGCACGGACGTTTC
CTGCCCGGAGGACATCGACATCCCCCACGACGACGATGTCCTCGTCCGGG
AGACCCCTCAGAACCGCGGCGACGATGTCATCGTCGAAGCGAGCGACCTC
GAGGGCTTTCTCTCCAACATGGAGTAGAGCAACGAGGCCTATGTGCTTCA
TCGCAAACACATGGTTCAAATCGCCCGCGGTCTTCCCAAGTTGCAGTGGT
GGGGATGTTTAG
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