mRNA_L-elsbetiae_contig1791.5117.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1791.5117.1
Unique NamemRNA_L-elsbetiae_contig1791.5117.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1791.5117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1791contigL-elsbetiae_contig1791:16294..19650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1414
Cds size1242
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1791.5117.1prot_L-elsbetiae_contig1791.5117.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1791 16798..19585 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.74595-UTR-L-elsbetiae_contig1791:16293..163861622815746.74595-UTR-L-elsbetiae_contig1791:16293..16386Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1791 16294..16386 -
1691683076.084431-UTR-L-elsbetiae_contig1791:16293..163861691683076.084431-UTR-L-elsbetiae_contig1791:16293..16386Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1791 16294..16386 -
1622815746.7556925-UTR-L-elsbetiae_contig1791:16783..167971622815746.7556925-UTR-L-elsbetiae_contig1791:16783..16797Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1791 16784..16797 -
1691683076.1036105-UTR-L-elsbetiae_contig1791:16783..167971691683076.1036105-UTR-L-elsbetiae_contig1791:16783..16797Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1791 16784..16797 -
1622815746.8311784-UTR-L-elsbetiae_contig1791:19585..196501622815746.8311784-UTR-L-elsbetiae_contig1791:19585..19650Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1791 19586..19650 -
1691683076.1725311-UTR-L-elsbetiae_contig1791:19585..196501691683076.1725311-UTR-L-elsbetiae_contig1791:19585..19650Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1791 19586..19650 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.7651618-CDS-L-elsbetiae_contig1791:16797..171061622815746.7651618-CDS-L-elsbetiae_contig1791:16797..17106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1791 16798..17106 -
1691683076.1173353-CDS-L-elsbetiae_contig1791:16797..171061691683076.1173353-CDS-L-elsbetiae_contig1791:16797..17106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1791 16798..17106 -
1622815746.7749228-CDS-L-elsbetiae_contig1791:17283..174151622815746.7749228-CDS-L-elsbetiae_contig1791:17283..17415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1791 17284..17415 -
1691683076.1285913-CDS-L-elsbetiae_contig1791:17283..174151691683076.1285913-CDS-L-elsbetiae_contig1791:17283..17415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1791 17284..17415 -
1622815746.7857268-CDS-L-elsbetiae_contig1791:17944..181961622815746.7857268-CDS-L-elsbetiae_contig1791:17944..18196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1791 17945..18196 -
1691683076.1372032-CDS-L-elsbetiae_contig1791:17944..181961691683076.1372032-CDS-L-elsbetiae_contig1791:17944..18196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1791 17945..18196 -
1622815746.8008068-CDS-L-elsbetiae_contig1791:18641..189051622815746.8008068-CDS-L-elsbetiae_contig1791:18641..18905Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1791 18642..18905 -
1691683076.1463394-CDS-L-elsbetiae_contig1791:18641..189051691683076.1463394-CDS-L-elsbetiae_contig1791:18641..18905Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1791 18642..18905 -
1622815746.8165805-CDS-L-elsbetiae_contig1791:19300..195851622815746.8165805-CDS-L-elsbetiae_contig1791:19300..19585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1791 19301..19585 -
1691683076.1563294-CDS-L-elsbetiae_contig1791:19300..195851691683076.1563294-CDS-L-elsbetiae_contig1791:19300..19585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1791 19301..19585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1791.5117.1

>prot_L-elsbetiae_contig1791.5117.1 ID=prot_L-elsbetiae_contig1791.5117.1|Name=mRNA_L-elsbetiae_contig1791.5117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=414bp
MGASPVSQQSTPHQGLHLCNTGEKVSTTAPESQGGQAATDLGVQANQSTG
GARAKPWVNERAAAGRPVEGAGAHAAGAAAAGDSLSPAEVGGYAQLELGK
ADNFLSAREPALEGVASRGEFLQLTIRADGNCFMVAGTLGALISAALQPA
AEPLQAVQARFTVALQPYCESATPFSILPEELKNWVRTFMRYLGGLVDAK
RNGAGEDLAAKIVRDLSKPQASETGKGGTPVGGAVQLYVELFRGMVLASR
ILAISTKPYRDQSRAFQDNLRTVSEATAAENGFDLRPGENLGVRLGLFRD
GLNLENRLTRAVFDAAAREEFLGIPKEEEQGLENSPILRDAEGDIVVRAG
ILDHFDLWLRAESTAGRAIVKGLYVKFLNPEDGERETVRLLKLERDSRQA
TSKEDLHKIALQI*
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mRNA from alignment at L-elsbetiae_contig1791:16294..19650-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1791.5117.1 ID=mRNA_L-elsbetiae_contig1791.5117.1|Name=mRNA_L-elsbetiae_contig1791.5117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3357bp|location=Sequence derived from alignment at L-elsbetiae_contig1791:16294..19650- (Laminarionema elsbetiae ELsaHSoW15)
GGTGGCTGGTGACAGGAGCCGGATGGAGGGACGCGAGCGGAGTCGGGGTG
GACCCGCGAGCTGCAATGGGCGCTTCACCGGTGAGCCAGCAGTCTACTCC
ACACCAAGGATTGCATCTTTGCAATACCGGCGAGAAGGTATCGACGACGG
CGCCGGAAAGCCAGGGTGGCCAGGCTGCGACAGACCTTGGTGTGCAGGCG
AACCAAAGTACTGGTGGTGCCAGGGCCAAGCCTTGGGTGAATGAAAGAGC
GGCAGCAGGAAGGCCGGTGGAGGGTGCAGGGGCTCATGCTGCGGGGGCTG
CCGCCGCGGGTGATTCTCTTTCGCCCGCAGAGGTCGGAGGGTACGCTCAG
GTGTGTACCGTGCACAGTGGTGGTGGCAGTGGTGGTGGTGGTGGTGTTGG
TTCGGTTGAAAAGAAGGTATCGTGGCGTGCGTTGTCAGCACCGTCAGCAT
TACCCGTGTGTCAGATGGAACCACATAGCGTGGCTGTTTAGCTGCGCAAA
TCCCCCTTGCTCAAAACCTCAGCAACGTCTCTTCCCCTCCTTACCGAAGC
TGAAGTTGTGCGGGGGGCTGACCCCTCCTCCCCTCCGCGTTTCCCGGAGA
ATTGTGGACGTGCGGTTAGCATGTGTAGAATGTGACACTGTGGTGGTCGA
CTGCCGACACGCACTCGGCGTGCCGAAAATACCCAGCCTTACCTTGGATT
CCTCTTTTTGTGCTGAACATATCCCCCCCCCCTCCCCTCTCACAGCTGGA
GCTTGGCAAGGCCGATAACTTTTTGAGTGCACGTGAGCCGGCGTTGGAAG
GGGTGGCGTCGAGGGGCGAGTTTCTCCAACTCACGATCCGCGCGGACGGA
AACTGCTTTATGGTGGCCGGCACACTGGGGGCACTGATAAGCGCAGCGCT
GCAACCTGCCGCCGAACCACTCCAAGCCGTCCAAGCCCGTTTCACGGTGG
CTCTCCAACCCTACTGTGAAAGTGCGACTCCCTTCTCGATCCTGCCGGAA
GAGCTCAAGGTGGGCTTTTTCATCCACGTGCCCTTGGCAGTTTTAAGGTG
TCGCTGCCGTGTCTCAACCTTCCTGCCAACAGTCAGATGTGCCGTTGGGA
AACACGCCGTACTGAAATGTTGCTCTTCCCCCGTCGTCCAAAGGGGTCGC
ACAGCAAAAATGACCTTCGCTTTTAACGTTTGTACAAGTACCCACAAATA
AGCGAGTCATGAGTGGTTGCTTGTGTGATGCCTGTGCCTATCTATCGACT
CGCGCTCACCAAGTGGTTGAGGTACATGCAAGTTTGGGAACTGGCGGCGG
TGCGAAGAGCGTGGGGTGGCGGCAACTCGCAGGAATAGCGTGGCCAGCTG
GATTAGGGAGGTGTACGCCAACCCGTTCATAACCCCCCCGCCCCTTCGAC
TCGGTGCCATCCGCGATTACCCCCCCGGCTTTCTCGCCGCATTCATGCTC
CCAGAACTGGGTACGCACGTTCATGAGGTACCTAGGGGGCCTTGTAGACG
CCAAGAGAAACGGGGCTGGTGAAGATCTGGCGGCGAAGATCGTGCGAGAC
CTCAGCAAGCCGCAAGCAAGTGAAACAGGCAAGGGGGGCACTCCCGTGGG
GGGCGCCGTACAGCTGTACGTTGAACTCTTCCGAGGAATGGTCCTTGCTA
GCCGGATATTGGCGATCTCCACGAAGCCTTACCGCGATCAGAGCCGAGCT
TTCCAGGTGCGAGTTAAAAAACAGCCGGTTTTATCTCTGCCGGCAGAGTT
CTCTACACGCTGCTGGAAATGTATTTGATGGTCTAAGCGGATAATTCGGT
TCGCTTGTTGTACCGCTTTCAGCTGTTATTTTCCATTCTATTCCTGTCCT
TGTAACAGCCCGGAACACGGTATTTTTTGTACGAGTTTCCAGAGAAGTAC
CTGTCAACCCATCGCTGGGACGCGTTTTCCAACAGCAACAGTCAAGCGGA
TACCCAGCAGCGGTATTGAACATTGCCTCGCCACAACGAGCGTCTTTGCC
TTCGATGGCAGTGCTAGACAGGAAACATCCGCTGGTGATGTGGCACTCTT
TGAGTCCCTCGGCCCTCGTCGGCTGCTCTTGGGCACTCCAGTTTAGGGAA
CCCCCCTCCCCCCGCGCGCGCGCGCGCTCGTACCTTAGCGCGAAGAAGGA
AGAGGGGTTGGCAACAGAACGCACAGCTGAAACGTACATGTACACGCTTA
TGCCGCTTGCTCTCTTCTCGTCGCACATTCCGCAGGACAACCTTCGTACG
GTTTCCGAGGCCACTGCCGCGGAAAACGGGTTCGATCTCAGACCCGGGGA
AAACCTGGGTGTGCGTCTGGGCCTGTTCAGGGATGGCTTGAACCTTGAAA
ACCGTCTGACGAGAGCTGTGAGTGAACGCGCGTCCGTGCTTTTTAAAGTG
CGTTGCCGCCGCGCAACGACCGGCATGATTGTTTTTGCTGCCGAGGATGC
TTTTGCTGGTTGGTGATGTTGGTGCTTCAACTGTCGCGCGGTCATCCTCT
CCCGACATGCCTTGAACCCACCCTGGCCTTGGTGCTGTCTTCAGGTCTTC
GACGCCGCCGCGAGAGAGGAATTCTTGGGAATCCCCAAGGAGGAAGAGCA
GGGGCTTGAGAATTCCCCCATCCTACGGGATGCAGAAGGAGACATCGTCG
TTAGAGCCGGAATCCTCGACCACTTCGACCTGTGGCTCAGGGCCGAGTCC
ACTGCCGGCCGCGCCATCGTTAAGGGCCTCTATGTAAAGTTTCTCAATCC
CGAGGATGGCGAGCGGGAGACGGTTAGGCTGCTTAAGCTCGAGCGTGATT
CTCGCCAAGCGACGTCGAAGGAAGATCTACATAAGATCGCGCTACAAATC
TAGCACGAGGATCAGGGGTGAGTGGGTGGTCTACCTGCTGCTTGCTGATG
CTTGTGTATTTTCCACCAATCTGGGCATGCGTGTCAGAGTGTGTTGGTCG
ATCGGAGAAAAACAAATATTTTCCCATCCGAAGCGGTTGCGGGAAGCATA
TCTAGAATACGGAACTCCAACAACAAAGGATGTTCTGTAGTTGACAGCAT
GGAGATTTCCTATAAAAATGTATCCCTGGGGTGAATCTAAAGCAAACGCC
AGTTCGAGAACCGAGTTCAGAGTCTGTAGCCCATCGAACTCCGTGATTAG
GGATGGTCTACGCTTGTTTTAAAGGAATGGAAATTACTTCCTTTTCTCCT
TTCACAAGAGTTCTCTCACGCCTGCGGTTCCTGCCGACATGCATCTACCG
CCCTCTCGATGCAGGTGTTGAACTCAAAGAGAGAAACAACAGGGACACCC
GCCAGGGGGCACCGTGTATCATCGGGTTGATCGCGCGATCGTGGTAATGC
TCGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1791:16294..19650-

>mRNA_L-elsbetiae_contig1791.5117.1 ID=mRNA_L-elsbetiae_contig1791.5117.1|Name=mRNA_L-elsbetiae_contig1791.5117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2484bp|location=Sequence derived from alignment at L-elsbetiae_contig1791:16294..19650- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGCTTCACCGGTGAGCCAGCAGTCTACTCCACACCAAGGATTGCA
TCTTTGCAATACCGGCGAGAAGGTATCGACGACGGCGCCGGAAAGCCAGG
GTGGCCAGGCTGCGACAGACCTTGGTGTGCAGGCGAACCAAAGTACTGGT
GGTGCCAGGGCCAAGCCTTGGGTGAATGAAAGAGCGGCAGCAGGAAGGCC
GGTGGAGGGTGCAGGGGCTCATGCTGCGGGGGCTGCCGCCGCGGGTGATT
CTCTTTCGCCCGCAGAGGTCGGAGGGTACGCTCAGATGGGCGCTTCACCG
GTGAGCCAGCAGTCTACTCCACACCAAGGATTGCATCTTTGCAATACCGG
CGAGAAGGTATCGACGACGGCGCCGGAAAGCCAGGGTGGCCAGGCTGCGA
CAGACCTTGGTGTGCAGGCGAACCAAAGTACTGGTGGTGCCAGGGCCAAG
CCTTGGGTGAATGAAAGAGCGGCAGCAGGAAGGCCGGTGGAGGGTGCAGG
GGCTCATGCTGCGGGGGCTGCCGCCGCGGGTGATTCTCTTTCGCCCGCAG
AGGTCGGAGGGTACGCTCAGCTGGAGCTTGGCAAGGCCGATAACTTTTTG
AGTGCACGTGAGCCGGCGTTGGAAGGGGTGGCGTCGAGGGGCGAGTTTCT
CCAACTCACGATCCGCGCGGACGGAAACTGCTTTATGGTGGCCGGCACAC
TGGGGGCACTGATAAGCGCAGCGCTGCAACCTGCCGCCGAACCACTCCAA
GCCGTCCAAGCCCGTTTCACGGTGGCTCTCCAACCCTACTGTGAAAGTGC
GACTCCCTTCTCGATCCTGCCGGAAGAGCTCAAGCTGGAGCTTGGCAAGG
CCGATAACTTTTTGAGTGCACGTGAGCCGGCGTTGGAAGGGGTGGCGTCG
AGGGGCGAGTTTCTCCAACTCACGATCCGCGCGGACGGAAACTGCTTTAT
GGTGGCCGGCACACTGGGGGCACTGATAAGCGCAGCGCTGCAACCTGCCG
CCGAACCACTCCAAGCCGTCCAAGCCCGTTTCACGGTGGCTCTCCAACCC
TACTGTGAAAGTGCGACTCCCTTCTCGATCCTGCCGGAAGAGCTCAAGAA
CTGGGTACGCACGTTCATGAGGTACCTAGGGGGCCTTGTAGACGCCAAGA
GAAACGGGGCTGGTGAAGATCTGGCGGCGAAGATCGTGCGAGACCTCAGC
AAGCCGCAAGCAAGTGAAACAGGCAAGGGGGGCACTCCCGTGGGGGGCGC
CGTACAGCTGTACGTTGAACTCTTCCGAGGAATGGTCCTTGCTAGCCGGA
TATTGGCGATCTCCACGAAGCCTTACCGCGATCAGAGCCGAGCTTTCCAG
AACTGGGTACGCACGTTCATGAGGTACCTAGGGGGCCTTGTAGACGCCAA
GAGAAACGGGGCTGGTGAAGATCTGGCGGCGAAGATCGTGCGAGACCTCA
GCAAGCCGCAAGCAAGTGAAACAGGCAAGGGGGGCACTCCCGTGGGGGGC
GCCGTACAGCTGTACGTTGAACTCTTCCGAGGAATGGTCCTTGCTAGCCG
GATATTGGCGATCTCCACGAAGCCTTACCGCGATCAGAGCCGAGCTTTCC
AGGACAACCTTCGTACGGTTTCCGAGGCCACTGCCGCGGAAAACGGGTTC
GATCTCAGACCCGGGGAAAACCTGGGTGTGCGTCTGGGCCTGTTCAGGGA
TGGCTTGAACCTTGAAAACCGTCTGACGAGAGCTGACAACCTTCGTACGG
TTTCCGAGGCCACTGCCGCGGAAAACGGGTTCGATCTCAGACCCGGGGAA
AACCTGGGTGTGCGTCTGGGCCTGTTCAGGGATGGCTTGAACCTTGAAAA
CCGTCTGACGAGAGCTGTCTTCGACGCCGCCGCGAGAGAGGAATTCTTGG
GAATCCCCAAGGAGGAAGAGCAGGGGCTTGAGAATTCCCCCATCCTACGG
GATGCAGAAGGAGACATCGTCGTTAGAGCCGGAATCCTCGACCACTTCGA
CCTGTGGCTCAGGGCCGAGTCCACTGCCGGCCGCGCCATCGTTAAGGGCC
TCTATGTAAAGTTTCTCAATCCCGAGGATGGCGAGCGGGAGACGGTTAGG
CTGCTTAAGCTCGAGCGTGATTCTCGCCAAGCGACGTCGAAGGAAGATCT
ACATAAGATCGCGCTACAAATCTAGGTCTTCGACGCCGCCGCGAGAGAGG
AATTCTTGGGAATCCCCAAGGAGGAAGAGCAGGGGCTTGAGAATTCCCCC
ATCCTACGGGATGCAGAAGGAGACATCGTCGTTAGAGCCGGAATCCTCGA
CCACTTCGACCTGTGGCTCAGGGCCGAGTCCACTGCCGGCCGCGCCATCG
TTAAGGGCCTCTATGTAAAGTTTCTCAATCCCGAGGATGGCGAGCGGGAG
ACGGTTAGGCTGCTTAAGCTCGAGCGTGATTCTCGCCAAGCGACGTCGAA
GGAAGATCTACATAAGATCGCGCTACAAATCTAG
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