mRNA_L-elsbetiae_contig17908.5115.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17908.5115.1
Unique NamemRNA_L-elsbetiae_contig17908.5115.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17908.5115.1 vs. uniprot
Match: D8LBZ2_ECTSI (Subtilisin (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ2_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.240e-11
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   28 ELGSIYNSDRELADINTISAFSSYGPTVDGRVKPEVVAPGDEIYSADGNDDGGDSCRI 201
            E G   + D  + DI+ ++ FSS+GPT+DGR+KPEVVAPGD IYSA G  DG  +CR+
Sbjct:  506 EDGDPTDGDSRVQDIDAMAYFSSFGPTLDGRIKPEVVAPGDMIYSAAGGGDGNYTCRL 563          
BLAST of mRNA_L-elsbetiae_contig17908.5115.1 vs. uniprot
Match: A0A2I6U1R2_SACJA (Subtilisin (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1R2_SACJA)

HSP 1 Score: 67.8 bits (164), Expect = 1.250e-11
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   34 GSIYNSDRELADINTISAFSSYGPTVDGRVKPEVVAPGDEIYSADGNDDGGDSCRIS 204
            G + +     AD++T++ FSSYGPT DGR+KPEVVAPGD IYSA  +     SCR+S
Sbjct:  629 GDLIDGTNGYADVDTVAQFSSYGPTQDGRIKPEVVAPGDAIYSARSDGSDNHSCRLS 685          
BLAST of mRNA_L-elsbetiae_contig17908.5115.1 vs. uniprot
Match: A0A2I6U1Q9_SACJA (Subtilisin n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1Q9_SACJA)

HSP 1 Score: 67.0 bits (162), Expect = 2.320e-11
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   34 GSIYNSDRELADINTISAFSSYGPTVDGRVKPEVVAPGDEIYSADGNDDGGD--SCRIS 204
            G + +     AD++T++ FSSYGPT DGR+KPEVVAPGD  YSA    DGGD  SCR+S
Sbjct:  386 GDLADGTNGYADVDTVAQFSSYGPTQDGRIKPEVVAPGDTTYSA--RSDGGDDHSCRLS 442          
BLAST of mRNA_L-elsbetiae_contig17908.5115.1 vs. uniprot
Match: A0A2I6U1S5_SACJA (Subtilisin n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1S5_SACJA)

HSP 1 Score: 65.9 bits (159), Expect = 5.960e-11
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    7 TALDPDRELGSIYNSDRELADINTISAFSSYGPTVDGRVKPEVVAPGDEIYSADGNDDGGD--SCRIS 204
            T+ D DR  G+        +D++T++ FSSYGPT DGR+KPEVVAPGD +YSA    DG D  SCR+S
Sbjct:  621 TSADGDRADGT-----NGYSDVDTVAVFSSYGPTQDGRIKPEVVAPGDAVYSA--RSDGSDVHSCRLS 681          
BLAST of mRNA_L-elsbetiae_contig17908.5115.1 vs. uniprot
Match: A0A6H5JKA8_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA8_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 5.980e-11
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   28 ELGSIYNSDRELADINTISAFSSYGPTVDGRVKPEVVAPGDEIYSADGNDDGGDSCRI 201
            E G   + D  + DI+ ++ FSS+GPT+D R+KPEVVAPGD IYSA G+ DG  +CR+
Sbjct:  789 EDGDPTDGDSRVQDIDAMAYFSSFGPTLDNRIKPEVVAPGDMIYSAAGSGDGNYTCRL 846          
BLAST of mRNA_L-elsbetiae_contig17908.5115.1 vs. uniprot
Match: D8LQI1_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI1_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 9.940e-10
Identity = 38/68 (55.88%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 TTTALDPDRELGSIYNSDRELADINTISAFSSYGPTVDGRVKPEVVAPGDEIYSADGNDDGGDS-CRI 201
            +TT LD     G  Y    EL+ I+ +S FS YG T DGR+KPEVVAPGD IYSA GN  GGDS C +
Sbjct:  662 STTDLD-----GRGYADGDELSTIDVVSEFSGYGFTEDGRIKPEVVAPGDMIYSASGN--GGDSSCEL 722          
BLAST of mRNA_L-elsbetiae_contig17908.5115.1 vs. uniprot
Match: A0A6H5L2G3_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G3_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.350e-9
Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 TTTALDPDRELGSIYNSDRELADINTISAFSSYGPTVDGRVKPEVVAPGDEIYSADGNDDGGDSCRI 201
            +TT LD     G  Y    EL+ I+ +S FS YG T DGR+KPEVVAPGD IYSA GN  G  SC +
Sbjct:  351 STTDLD-----GRGYADGDELSTIDVVSEFSGYGFTEDGRIKPEVVAPGDMIYSASGNG-GNSSCEL 411          
BLAST of mRNA_L-elsbetiae_contig17908.5115.1 vs. uniprot
Match: D8LU20_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU20_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 4.740e-9
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   58 ELADINTISAFSSYGPTVDGRVKPEVVAPGDEIYSADGNDDGGDSCRI 201
            E A ++T++ FSS GPT+DGR+KP+VVAPGD++ SA  +   G SCR+
Sbjct:  710 EPAGVDTVAFFSSQGPTLDGRIKPDVVAPGDQVASASSDGTDGHSCRL 757          
BLAST of mRNA_L-elsbetiae_contig17908.5115.1 vs. uniprot
Match: D8LSW0_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW0_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.210e-8
Identity = 25/48 (52.08%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   58 ELADINTISAFSSYGPTVDGRVKPEVVAPGDEIYSADGNDDGGDSCRI 201
            E A ++T++ FSS GPT+DGR+KP+VVAPGD++ SA  +   G SC++
Sbjct:  751 EPAGVDTVAFFSSQGPTLDGRIKPDVVAPGDQVASASSDGTDGHSCKL 798          
BLAST of mRNA_L-elsbetiae_contig17908.5115.1 vs. uniprot
Match: A0A6H5JQT4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT4_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 5.800e-8
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:   70 INTISAFSSYGPTVDGRVKPEVVAPGDEIYSA--DGNDDGGDSCRI 201
            I+T++ FSSYGPT D R+KPEV+APGD IYSA  DG+ D   SCR+
Sbjct:  706 IDTVAVFSSYGPTSDSRIKPEVLAPGDAIYSAASDGSMDS-HSCRL 750          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17908.5115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBZ2_ECTSI1.240e-1155.17Subtilisin (Fragment) n=1 Tax=Ectocarpus siliculos... [more]
A0A2I6U1R2_SACJA1.250e-1154.39Subtilisin (Fragment) n=1 Tax=Saccharina japonica ... [more]
A0A2I6U1Q9_SACJA2.320e-1157.63Subtilisin n=1 Tax=Saccharina japonica TaxID=88149... [more]
A0A2I6U1S5_SACJA5.960e-1152.94Subtilisin n=1 Tax=Saccharina japonica TaxID=88149... [more]
A0A6H5JKA8_9PHAE5.980e-1153.45Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LQI1_ECTSI9.940e-1055.88Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5L2G3_9PHAE1.350e-953.73Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LU20_ECTSI4.740e-954.17Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LSW0_ECTSI1.210e-852.08Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JQT4_9PHAE5.800e-863.04Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17908contigL-elsbetiae_contig17908:681..1294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size205
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.3916926-CDS-L-elsbetiae_contig17908:681..7321622815746.3916926-CDS-L-elsbetiae_contig17908:681..732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17908 682..732 -
1691683075.8051245-CDS-L-elsbetiae_contig17908:681..7321691683075.8051245-CDS-L-elsbetiae_contig17908:681..732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17908 682..732 -
1622815746.4042823-CDS-L-elsbetiae_contig17908:1141..12941622815746.4042823-CDS-L-elsbetiae_contig17908:1141..1294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17908 1142..1294 -
1691683075.821935-CDS-L-elsbetiae_contig17908:1141..12941691683075.821935-CDS-L-elsbetiae_contig17908:1141..1294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17908 1142..1294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17908.5115.1prot_L-elsbetiae_contig17908.5115.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17908 682..1294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17908.5115.1

>prot_L-elsbetiae_contig17908.5115.1 ID=prot_L-elsbetiae_contig17908.5115.1|Name=mRNA_L-elsbetiae_contig17908.5115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
TTTALDPDRELGSIYNSDRELADINTISAFSSYGPTVDGRVKPEVVAPGD
EIYSADGNDDGGDSCRIS
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mRNA from alignment at L-elsbetiae_contig17908:681..1294-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17908.5115.1 ID=mRNA_L-elsbetiae_contig17908.5115.1|Name=mRNA_L-elsbetiae_contig17908.5115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=614bp|location=Sequence derived from alignment at L-elsbetiae_contig17908:681..1294- (Laminarionema elsbetiae ELsaHSoW15)
ACCACTACAGCGCTGGACCCGGACAGAGAGTTGGGCAGCATCTATAATTC CGACAGAGAATTGGCCGACATCAACACCATCTCCGCCTTCAGCAGCTACG GCCCCACGGTGGACGGGCGCGTCAAGCCGGAGGTTGTGGCACCCGGAGAC GAGGTAAGGCGCTCTCTCTTATCGCACTCTTTGACTTTGCCTCTCTGACT TTGCCATGTTTCCGAAAGATGTGCGGACCTTCTTTTGCGCAGCGGTGTGG TGAGTTGATTAATTTTTCGGGCCCTTTTTTGTCTGCAGGGTGCACAGGGT GGTTGCCTGCGGAGTCTGCCGAGAGGTACGTCTTGCCTTCGTTGAGTTGA GAGCGGGAGTTCAAGGGGCTTTGTAAAATAAGCAGAAACCTTGTCGAGTT GACGTCAAACAATTTGTAAGGAGTCTGCAATACGTGTTGTGTTTGGAATG TCATACACCCCCTCCTCACTCCTTCCCCCTCTATCGCGCCGTGTCTGTCT CTTGTTTTCATGGGCCTGTCACGGCATGCCATGCATCAAATCTGTGTTTC CATGAACCACAGATCTACTCTGCTGACGGGAATGACGACGGCGGCGACTC CTGCAGAATCAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17908:681..1294-

>mRNA_L-elsbetiae_contig17908.5115.1 ID=mRNA_L-elsbetiae_contig17908.5115.1|Name=mRNA_L-elsbetiae_contig17908.5115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig17908:681..1294- (Laminarionema elsbetiae ELsaHSoW15)
ACCACTACAGCGCTGGACCCGGACAGAGAGTTGGGCAGCATCTATAATTC
CGACAGAGAATTGGCCGACATCAACACCATCTCCGCCTTCAGCAGCTACG
GCCCCACGGTGGACGGGCGCGTCAAGCCGGAGGTTGTGGCACCCGGAGAC
GAGACCACTACAGCGCTGGACCCGGACAGAGAGTTGGGCAGCATCTATAA
TTCCGACAGAGAATTGGCCGACATCAACACCATCTCCGCCTTCAGCAGCT
ACGGCCCCACGGTGGACGGGCGCGTCAAGCCGGAGGTTGTGGCACCCGGA
GACGAGATCTACTCTGCTGACGGGAATGACGACGGCGGCGACTCCTGCAG
AATCAGCATCTACTCTGCTGACGGGAATGACGACGGCGGCGACTCCTGCA
GAATCAGC
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