mRNA_L-elsbetiae_contig17905.5114.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17905.5114.1
Unique NamemRNA_L-elsbetiae_contig17905.5114.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17905.5114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17905contigL-elsbetiae_contig17905:1617..2229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size613
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17905.5114.1prot_L-elsbetiae_contig17905.5114.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17905 1740..2078 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.3351777-UTR-L-elsbetiae_contig17905:1616..17391622815746.3351777-UTR-L-elsbetiae_contig17905:1616..1739Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17905 1617..1739 +
1691683075.7725592-UTR-L-elsbetiae_contig17905:1616..17391691683075.7725592-UTR-L-elsbetiae_contig17905:1616..1739Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17905 1617..1739 +
1622815746.3601227-UTR-L-elsbetiae_contig17905:2078..22291622815746.3601227-UTR-L-elsbetiae_contig17905:2078..2229Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17905 2079..2229 +
1691683075.7936187-UTR-L-elsbetiae_contig17905:2078..22291691683075.7936187-UTR-L-elsbetiae_contig17905:2078..2229Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17905 2079..2229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.349072-CDS-L-elsbetiae_contig17905:1739..20781622815746.349072-CDS-L-elsbetiae_contig17905:1739..2078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17905 1740..2078 +
1691683075.7828283-CDS-L-elsbetiae_contig17905:1739..20781691683075.7828283-CDS-L-elsbetiae_contig17905:1739..2078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17905 1740..2078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17905.5114.1

>prot_L-elsbetiae_contig17905.5114.1 ID=prot_L-elsbetiae_contig17905.5114.1|Name=mRNA_L-elsbetiae_contig17905.5114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MKSLLKSLVPMHGSPTGKHFRVVLRNFGAGGRSRYVGGSPPHFGITVYRQ
GLCVPSKIEKPSTAKQLPPWCDPAETLPPFSILTSTAKLLPLKGENPRRT
ITAVCTAIPPKH*
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mRNA from alignment at L-elsbetiae_contig17905:1617..2229+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17905.5114.1 ID=mRNA_L-elsbetiae_contig17905.5114.1|Name=mRNA_L-elsbetiae_contig17905.5114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=613bp|location=Sequence derived from alignment at L-elsbetiae_contig17905:1617..2229+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTTGCGTTTCTATCGCGGCAAGGTCTAAAACATCAATCCGTCTGACA
AATCTGTCTGGCTTTTCAGACGGAATCTAGGCAGAACTAGCGTACGTCGC
CACGTGCGTCGCCAGTCGCCAGCATGAAAAGTCTGCTGAAAAGCCTGGTT
CCAATGCATGGCTCACCAACAGGGAAACATTTCAGGGTAGTCCTCCGTAA
TTTTGGTGCTGGTGGACGGTCCCGGTATGTTGGCGGTTCACCGCCACATT
TTGGTATAACCGTCTACCGCCAAGGTCTTTGTGTACCGTCAAAAATCGAG
AAACCATCAACCGCCAAACAATTACCGCCGTGGTGCGATCCCGCCGAAAC
ATTACCGCCATTTTCGATACTAACTTCAACCGCCAAATTATTACCGTTAA
AAGGCGAAAACCCCCGTCGAACAATTACCGCCGTATGTACGGCAATACCG
CCGAAACACTGATTTACCACTAAATTTGACTTTACCGTCTCCGCCGAAAA
AATACCGCCAACTCTCAATACCGTCAGGCCATTACCGCCAACTCTCGATA
CCGCCCAAAAAGCATCGCCAACACTGGATACGATCCAAAACGCACCGGCT
TCTCTAGTGTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17905:1617..2229+

>mRNA_L-elsbetiae_contig17905.5114.1 ID=mRNA_L-elsbetiae_contig17905.5114.1|Name=mRNA_L-elsbetiae_contig17905.5114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig17905:1617..2229+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAAGTCTGCTGAAAAGCCTGGTTCCAATGCATGGCTCACCAACAGG
GAAACATTTCAGGGTAGTCCTCCGTAATTTTGGTGCTGGTGGACGGTCCC
GGTATGTTGGCGGTTCACCGCCACATTTTGGTATAACCGTCTACCGCCAA
GGTCTTTGTGTACCGTCAAAAATCGAGAAACCATCAACCGCCAAACAATT
ACCGCCGTGGTGCGATCCCGCCGAAACATTACCGCCATTTTCGATACTAA
CTTCAACCGCCAAATTATTACCGTTAAAAGGCGAAAACCCCCGTCGAACA
ATTACCGCCGTATGTACGGCAATACCGCCGAAACACTGAATGAAAAGTCT
GCTGAAAAGCCTGGTTCCAATGCATGGCTCACCAACAGGGAAACATTTCA
GGGTAGTCCTCCGTAATTTTGGTGCTGGTGGACGGTCCCGGTATGTTGGC
GGTTCACCGCCACATTTTGGTATAACCGTCTACCGCCAAGGTCTTTGTGT
ACCGTCAAAAATCGAGAAACCATCAACCGCCAAACAATTACCGCCGTGGT
GCGATCCCGCCGAAACATTACCGCCATTTTCGATACTAACTTCAACCGCC
AAATTATTACCGTTAAAAGGCGAAAACCCCCGTCGAACAATTACCGCCGT
ATGTACGGCAATACCGCCGAAACACTGA
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