mRNA_L-elsbetiae_contig17905.5113.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17905.5113.1
Unique NamemRNA_L-elsbetiae_contig17905.5113.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17905.5113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17905contigL-elsbetiae_contig17905:333..1179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size847
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17905.5113.1prot_L-elsbetiae_contig17905.5113.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17905 543..1037 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.2780747-UTR-L-elsbetiae_contig17905:332..5421622815746.2780747-UTR-L-elsbetiae_contig17905:332..542Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17905 333..542 +
1691683075.7473059-UTR-L-elsbetiae_contig17905:332..5421691683075.7473059-UTR-L-elsbetiae_contig17905:332..542Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17905 333..542 +
1622815746.304606-UTR-L-elsbetiae_contig17905:1037..11791622815746.304606-UTR-L-elsbetiae_contig17905:1037..1179Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17905 1038..1179 +
1691683075.7637236-UTR-L-elsbetiae_contig17905:1037..11791691683075.7637236-UTR-L-elsbetiae_contig17905:1037..1179Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17905 1038..1179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.2912915-CDS-L-elsbetiae_contig17905:542..10371622815746.2912915-CDS-L-elsbetiae_contig17905:542..1037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17905 543..1037 +
1691683075.755745-CDS-L-elsbetiae_contig17905:542..10371691683075.755745-CDS-L-elsbetiae_contig17905:542..1037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17905 543..1037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17905.5113.1

>prot_L-elsbetiae_contig17905.5113.1 ID=prot_L-elsbetiae_contig17905.5113.1|Name=mRNA_L-elsbetiae_contig17905.5113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MSYAYLLHNSREQRSYTGHHKRPSSSLTYGDICRSPLENLVLPDLHGPGV
VFVRRKRSSRKGIVFYFRDCRCLRRRAKLIIRVPRRQVPITAPRQTKRKG
ACCVRDSRGAGGGYLDVCDRNCSYPLLKTNRMLQSRQQLPLPSTKLRFGK
ITIHTSWFRLKAQN*
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mRNA from alignment at L-elsbetiae_contig17905:333..1179+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17905.5113.1 ID=mRNA_L-elsbetiae_contig17905.5113.1|Name=mRNA_L-elsbetiae_contig17905.5113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=847bp|location=Sequence derived from alignment at L-elsbetiae_contig17905:333..1179+ (Laminarionema elsbetiae ELsaHSoW15)
CACGTGATACCCCGTTCGCCGCTCGATGAGCGAACGAACACGTTTCTTCG
TGCGCAATGCCTCCCTACTAGCCTGGTGGATCTGCCGGGTGGATATGTGT
GCTCTCCCGAGTATTTTCAGACTCACGGAACCACCGAAAACATGTTGGCC
GCACCCCCATAACATCCGTACGAGGCTGCTCCAAACGCCAACCAAACGAC
ACCCGCGTGCATGTCCTACGCCTATCTGTTACACAATAGCAGAGAACAGC
GCTCCTACACAGGTCACCACAAGCGTCCGAGCAGCTCTCTCACCTACGGC
GATATCTGCCGCTCCCCCTTGGAGAACCTGGTTCTCCCGGATCTCCACGG
CCCTGGTGTTGTTTTTGTTCGAAGGAAGCGGTCGTCAAGGAAGGGTATCG
TCTTTTATTTTCGTGACTGTCGGTGCCTAAGACGGCGGGCCAAATTGATA
ATCCGGGTCCCCCGCCGCCAAGTGCCAATCACAGCTCCCAGACAGACCAA
ACGGAAAGGGGCATGCTGCGTGCGAGACAGCCGCGGTGCAGGGGGGGGGT
ACCTTGATGTGTGCGATAGGAATTGCTCGTACCCCCTTTTGAAAACGAAT
CGCATGCTACAAAGTAGGCAGCAGCTACCGTTGCCATCCACCAAACTCAG
GTTTGGGAAAATAACCATACATACAAGCTGGTTCAGGCTGAAAGCCCAAA
ATTAAAGTTGAGTTCCCGGCGATTCCTCACGCCGTTTTTCCGAGTTATAC
AACGAAATTTTGCACACATGTTCTTGAAGGCATTAACTCAAACTCGAAGG
GTGCCTTTTTTTATTTCAGGTTTTGTTGTCGAGATAGCCGGGATCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17905:333..1179+

>mRNA_L-elsbetiae_contig17905.5113.1 ID=mRNA_L-elsbetiae_contig17905.5113.1|Name=mRNA_L-elsbetiae_contig17905.5113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig17905:333..1179+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCTACGCCTATCTGTTACACAATAGCAGAGAACAGCGCTCCTACAC
AGGTCACCACAAGCGTCCGAGCAGCTCTCTCACCTACGGCGATATCTGCC
GCTCCCCCTTGGAGAACCTGGTTCTCCCGGATCTCCACGGCCCTGGTGTT
GTTTTTGTTCGAAGGAAGCGGTCGTCAAGGAAGGGTATCGTCTTTTATTT
TCGTGACTGTCGGTGCCTAAGACGGCGGGCCAAATTGATAATCCGGGTCC
CCCGCCGCCAAGTGCCAATCACAGCTCCCAGACAGACCAAACGGAAAGGG
GCATGCTGCGTGCGAGACAGCCGCGGTGCAGGGGGGGGGTACCTTGATGT
GTGCGATAGGAATTGCTCGTACCCCCTTTTGAAAACGAATCGCATGCTAC
AAAGTAGGCAGCAGCTACCGTTGCCATCCACCAAACTCAGGTTTGGGAAA
ATAACCATACATACAAGCTGGTTCAGGCTGAAAGCCCAAAATTAAATGTC
CTACGCCTATCTGTTACACAATAGCAGAGAACAGCGCTCCTACACAGGTC
ACCACAAGCGTCCGAGCAGCTCTCTCACCTACGGCGATATCTGCCGCTCC
CCCTTGGAGAACCTGGTTCTCCCGGATCTCCACGGCCCTGGTGTTGTTTT
TGTTCGAAGGAAGCGGTCGTCAAGGAAGGGTATCGTCTTTTATTTTCGTG
ACTGTCGGTGCCTAAGACGGCGGGCCAAATTGATAATCCGGGTCCCCCGC
CGCCAAGTGCCAATCACAGCTCCCAGACAGACCAAACGGAAAGGGGCATG
CTGCGTGCGAGACAGCCGCGGTGCAGGGGGGGGGTACCTTGATGTGTGCG
ATAGGAATTGCTCGTACCCCCTTTTGAAAACGAATCGCATGCTACAAAGT
AGGCAGCAGCTACCGTTGCCATCCACCAAACTCAGGTTTGGGAAAATAAC
CATACATACAAGCTGGTTCAGGCTGAAAGCCCAAAATTAA
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