mRNA_L-elsbetiae_contig1789.5106.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1789.5106.1
Unique NamemRNA_L-elsbetiae_contig1789.5106.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1789.5106.1 vs. uniprot
Match: A0A6H5L8B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.930e-14
Identity = 64/149 (42.95%), Postives = 85/149 (57.05%), Query Frame = 1 
Query:    1 PGRPPATPKPIAEDGNTSSSSLGSGRISHKRHVGGSGGG--------SGELHGIA-ADASPANTALPSASTSSAVSMPSAAGVTVDPADGASGGAGLVLWSAGALARGCGGGNGVGG---SSRSFTPVGIRRSSGSRRLITPQDLGRQV 411
            P RPPATPKP+A+DG TSS+ +GSGRISHKR+ GG            + E   +A ADA   N     A T+  ++ P     T D    ++   G++LW  G LARG  GG+G GG   +SR FTPV +  ++G RR+ TPQ  GR+ 
Sbjct:   15 PKRPPATPKPVADDGGTSSN-VGSGRISHKRYGGGXXXXXXXXXXXXNTEPFPVAGADAGATNVTSGGAGTT--ITTPXXXXATPDAVGSSTAKTGVMLWPTGMLARGGVGGSGSGGVGVNSRGFTPVSVVPTTGPRRVATPQQGGREA 160
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BLAST of mRNA_L-elsbetiae_contig1789.5106.1 vs. uniprot
Match: D7FIJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ2_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 9.690e-8
Identity = 48/108 (44.44%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 PGRPPATPKPIAEDGNTSSSSLGSGRISHKRHVGGSGGGSG--------ELHGIA-ADASPANTALPSASTSSAVSMPSAAGVTVDPADGASGGAGLVLWSAGALARG 297
            P RPPATPKP+A+DG TSS+ LGSGRISHKR+ GG              EL  +A ADA   N     A T+  +++P   G T D    ++   G++LW  G LARG
Sbjct:   31 PKRPPATPKPVADDGGTSSN-LGSGRISHKRYGGGXXXXXXXXXXXXXTELFPVAGADAGATNVTSGGAGTT--ITIPGTPGATPDAVGSSTARTGVMLWPTGMLARG 135
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1789.5106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8B1_9PHAE3.930e-1442.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIJ2_ECTSI9.690e-844.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1789contigL-elsbetiae_contig1789:10750..11160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000770.1
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.3632329-CDS-L-elsbetiae_contig1789:10749..111601622815745.3632329-CDS-L-elsbetiae_contig1789:10749..11160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1789 10750..11160 -
1691683075.1376054-CDS-L-elsbetiae_contig1789:10749..111601691683075.1376054-CDS-L-elsbetiae_contig1789:10749..11160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1789 10750..11160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1789.5106.1prot_L-elsbetiae_contig1789.5106.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1789 10750..11160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1789.5106.1

>prot_L-elsbetiae_contig1789.5106.1 ID=prot_L-elsbetiae_contig1789.5106.1|Name=mRNA_L-elsbetiae_contig1789.5106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
PGRPPATPKPIAEDGNTSSSSLGSGRISHKRHVGGSGGGSGELHGIAADA
SPANTALPSASTSSAVSMPSAAGVTVDPADGASGGAGLVLWSAGALARGC
GGGNGVGGSSRSFTPVGIRRSSGSRRLITPQDLGRQV
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mRNA from alignment at L-elsbetiae_contig1789:10750..11160-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1789.5106.1 ID=mRNA_L-elsbetiae_contig1789.5106.1|Name=mRNA_L-elsbetiae_contig1789.5106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=411bp|location=Sequence derived from alignment at L-elsbetiae_contig1789:10750..11160- (Laminarionema elsbetiae ELsaHSoW15)
CCCGGGCGGCCACCTGCCACTCCGAAGCCGATCGCGGAAGACGGCAACAC
TAGCAGTAGCAGTCTCGGCAGTGGCCGTATCTCCCACAAGCGTCATGTCG
GCGGTAGCGGCGGCGGTAGCGGAGAGCTGCATGGCATCGCTGCCGATGCT
AGCCCCGCCAACACGGCCCTACCTTCGGCTTCCACCAGCAGTGCGGTTTC
CATGCCTAGTGCGGCGGGGGTGACGGTCGACCCTGCGGATGGGGCGAGCG
GGGGGGCAGGACTCGTGCTGTGGTCAGCTGGGGCGCTCGCGAGAGGATGT
GGTGGCGGCAATGGTGTCGGTGGTAGCAGCAGGAGCTTCACGCCGGTCGG
GATCAGGCGTAGCTCCGGCTCCAGACGCTTGATCACGCCGCAGGATCTGG
GGAGGCAGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1789:10750..11160-

>mRNA_L-elsbetiae_contig1789.5106.1 ID=mRNA_L-elsbetiae_contig1789.5106.1|Name=mRNA_L-elsbetiae_contig1789.5106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig1789:10750..11160- (Laminarionema elsbetiae ELsaHSoW15)
CCCGGGCGGCCACCTGCCACTCCGAAGCCGATCGCGGAAGACGGCAACAC
TAGCAGTAGCAGTCTCGGCAGTGGCCGTATCTCCCACAAGCGTCATGTCG
GCGGTAGCGGCGGCGGTAGCGGAGAGCTGCATGGCATCGCTGCCGATGCT
AGCCCCGCCAACACGGCCCTACCTTCGGCTTCCACCAGCAGTGCGGTTTC
CATGCCTAGTGCGGCGGGGGTGACGGTCGACCCTGCGGATGGGGCGAGCG
GGGGGGCAGGACTCGTGCTGTGGTCAGCTGGGGCGCTCGCGAGAGGATGT
GGTGGCGGCAATGGTGTCGGTGGTAGCAGCAGGAGCTTCACGCCGGTCGG
GATCAGGCGTAGCTCCGGCTCCAGACGCTTGATCACGCCGCAGGATCTGG
GGAGGCAGGTACCCGGGCGGCCACCTGCCACTCCGAAGCCGATCGCGGAA
GACGGCAACACTAGCAGTAGCAGTCTCGGCAGTGGCCGTATCTCCCACAA
GCGTCATGTCGGCGGTAGCGGCGGCGGTAGCGGAGAGCTGCATGGCATCG
CTGCCGATGCTAGCCCCGCCAACACGGCCCTACCTTCGGCTTCCACCAGC
AGTGCGGTTTCCATGCCTAGTGCGGCGGGGGTGACGGTCGACCCTGCGGA
TGGGGCGAGCGGGGGGGCAGGACTCGTGCTGTGGTCAGCTGGGGCGCTCG
CGAGAGGATGTGGTGGCGGCAATGGTGTCGGTGGTAGCAGCAGGAGCTTC
ACGCCGGTCGGGATCAGGCGTAGCTCCGGCTCCAGACGCTTGATCACGCC
GCAGGATCTGGGGAGGCAGGTA
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