mRNA_L-elsbetiae_contig17889.5103.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17889.5103.1
Unique NamemRNA_L-elsbetiae_contig17889.5103.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17889.5103.1 vs. uniprot
Match: D7G0U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U5_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.910e-12
Identity = 152/466 (32.62%), Postives = 187/466 (40.13%), Query Frame = 1 
Query:  277 HPSKKRRTPSPEADRRAPSATGLVSAELAGADETAEEAAASRERA-----------------LQEAEVIRWCQKVSSSRGMSSAGGSGGDSGVGSSVSSGDEERFFAGRVLDPAPR-----PARSRQGGS-------GSGSRDTRIAS----LNNGSLGW-VGEMMEEASPARSQQHNGNGDGGXXXXXXADGSGGFRGGSSREDERATTKAGESGAVLPAASSDYPRGRQSGAEIAAALASASGAAASAETVQALGNEAVPKAA-AGPGQGSTSCPSNTNQEAFFARHTLEPKPRLRGTVAPLAAQGEAPESGEFSSNFG----------------PGXXXXXXXXXXXSGSRSWT-EHLSPPRGSDALGSHRLIPREEEVLXXXXXXXXXXXXXXXXXSSGSSMDWQVRPEAMMGYFTTVGGVA--PPSLLRPGRRRGAAGARARARQSSPGVAAAAAARHGEQ 1512
            H SKK RTPSPE+ R++  A    +    G+      AAA+R  A                 L+EAEVI+WCQ+ SS R +S  GG           ++G +E+FFA RVLDP P       AR+R GGS       G G+ +T  +S    L    L + VGE+  +    R   H+G+G  G       D + G     S  DE A    G + A  P A+    R   +     AALASA                        G G+   S PS   QE FFA HTLEP P     VA     GEA  +G  +   G                P            +GS S   E  +P   SD  G  R  P  EEV                  SSGS+ DWQVRP AM G+FTTVG  A  P +LL   RR      R     S P V  AA AR G Q
Sbjct:  259 HASKKHRTPSPESARKSSLAAEDAADSAMGSSNAG--AAAARPGAXXXXXXXXXXXXXXXXXLREAEVIQWCQRGSSPRAISGDGG----------AAAGPDEKFFAARVLDPVPARHWPGTARTRTGGSKVSDAVFGWGAAETAASSSPPPLRPPCLRFGVGELSGDGR--REDNHSGSGSSGG-----TDAASGLDQFPSSRDEAAMV--GVTRAASPPAAKCNSRSPLASGFAGAALASAXXXXXXXXXXXXXXXXXXXXXXXTGSGR---SPPSAREQEGFFASHTLEPSPGRSWIVA----AGEAGSAGGETHRAGASGTTVPKPAHGIPMPPDSQRSDDDASGAAGSGSERREGHNPLCWSDTAG--RYPPLFEEVAAGAAVVDTE--------SSGSANDWQVRPGAMAGFFTTVGHSACSPAALLLSQRRPSPPRVR-----SPPAVGPAAPARVGIQ 681
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BLAST of mRNA_L-elsbetiae_contig17889.5103.1 vs. uniprot
Match: A0A6H5JYD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.060e-11
Identity = 126/425 (29.65%), Postives = 168/425 (39.53%), Query Frame = 1 
Query:  277 HPSKKRRTPSPEADRRAPSATGLVSAELAGADETAEEAAASRERALQE-----------------AEVIRWCQKVSSSRGMSSAGGSGGDSGVGSSVSSGDEERFFAGRVLDPAPR-----PARSRQGGS-------GSGSRDTRIASLNNG------SLGWVGEMMEEASPARSQQHNGNGDGGXXXXXXADGSGGFRGGSSREDERATTKAGESGAVLPAASSDYPRGRQSGAEIAAALASASGAAASAETVQALGNEAVPKAAAGPGQGSTSCPSNTNQEAFFARHTLEPKPRLRGTVAPLAAQGEAPESGEFSSNFGPGXXXXXXXXXXXSGSRSWTEHLSPPR--GSDALGSHRLIPREEEV--LXXXXXXXXXXXXXXXXXSSGSSMDWQVRPEAMMGYFTTV--GGVAPPSLLRPGRR 1428
            H  KKRRTPSP+  R++  A    +    G+      AAA+R  A+                   AEVIRWCQ+VSS+R MS  GG+    G  SS ++G +E+FFAGRVL+P P       AR+R GGS       G G+  T  +SL          LG VG +        + +      GG      +D     +  SSR++E     AG + A  P  +    R   +     AALAS                           +   S PS   Q+ F   HTLEPKPR R  +    A+G A    + +   G               S+      S P   GS     H  +   +                      SSGS+ DWQVRPEAM+G+FTTV     +P +LL   RR
Sbjct:  433 HAPKKRRTPSPDTARKSSPAAEDAAHSAMGSSSAG--AAAARPGAVDXXXXXXXXXXXXXXXXXXAEVIRWCQRVSSARAMSGDGGAAPGVGGISSSAAGPDEKFFAGRVLEPVPSRHWPGTARTRTGGSNVSDAVFGRGAAVTAASSLPPPLQPPYLGLG-VGNLSSRGRGDDNHRSGSGSSGGTDATRDSD-----QCPSSRDEE---AMAGVTRAASPPTAKCNSRIPLASGFAGAALASXXXX--XXXXXXXXXXXXXXXXXXXXXESRQSPPSAQEQQGFLDSHTLEPKPR-RSWILAAGAEGSARGETQGAGASGTAVPKPAHGIPMPPDSQRSDHDASGPAWSGSQRREGHNPLCWSDTAGRNPPVFEEGAAGAAVADTESSGSANDWQVRPEAMVGFFTTVDHSACSPAALLHSQRR 843
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17889.5103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0U5_ECTSI1.910e-1232.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYD8_9PHAE6.060e-1129.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17889contigL-elsbetiae_contig17889:618..2947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1583
Cds size1581
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.1591504-CDS-L-elsbetiae_contig17889:617..19481622815745.1591504-CDS-L-elsbetiae_contig17889:617..1948Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17889 618..1948 +
1691683075.0104048-CDS-L-elsbetiae_contig17889:617..19481691683075.0104048-CDS-L-elsbetiae_contig17889:617..1948Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17889 618..1948 +
1622815745.1722767-CDS-L-elsbetiae_contig17889:2696..29461622815745.1722767-CDS-L-elsbetiae_contig17889:2696..2946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17889 2697..2946 +
1691683075.0199144-CDS-L-elsbetiae_contig17889:2696..29461691683075.0199144-CDS-L-elsbetiae_contig17889:2696..2946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17889 2697..2946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17889.5103.1prot_L-elsbetiae_contig17889.5103.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17889 618..2946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17889.5103.1

>prot_L-elsbetiae_contig17889.5103.1 ID=prot_L-elsbetiae_contig17889.5103.1|Name=mRNA_L-elsbetiae_contig17889.5103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=527bp
SGDDERRAGGGGRRGRAEDGNSSSGSSGGGGRDGGGKRPGVRRRQEDGNS
RNSSEERNGRLGWDVGRSWGTGGGRAHSSGKTDRRRCKEEGGHPSKKRRT
PSPEADRRAPSATGLVSAELAGADETAEEAAASRERALQEAEVIRWCQKV
SSSRGMSSAGGSGGDSGVGSSVSSGDEERFFAGRVLDPAPRPARSRQGGS
GSGSRDTRIASLNNGSLGWVGEMMEEASPARSQQHNGNGDGGNGNGFGAD
GSGGFRGGSSREDERATTKAGESGAVLPAASSDYPRGRQSGAEIAAALAS
ASGAAASAETVQALGNEAVPKAAAGPGQGSTSCPSNTNQEAFFARHTLEP
KPRLRGTVAPLAAQGEAPESGEFSSNFGPGGGGGGGGSDGGSGSRSWTEH
LSPPRGSDALGSHRLIPREEEVLAAAAVAAKAAAAVSAAESSGSSMDWQV
RPEAMMGYFTTVGGVAPPSLLRPGRRRGAAGARARARQSSPGVAAAAAAR
HGEQLAVPAGEPHPGGQPPPCGSGAPP
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mRNA from alignment at L-elsbetiae_contig17889:618..2947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17889.5103.1 ID=mRNA_L-elsbetiae_contig17889.5103.1|Name=mRNA_L-elsbetiae_contig17889.5103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2330bp|location=Sequence derived from alignment at L-elsbetiae_contig17889:618..2947+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGGAGACGACGAGCGGCGAGCGGGGGGGGGCGGGAGGCGAGGCCGGGC
GGAGGACGGCAACAGCAGCAGCGGCAGCAGCGGCGGCGGCGGCAGAGACG
GCGGCGGCAAGAGGCCCGGTGTTCGACGACGGCAGGAAGACGGAAACTCT
CGCAATAGCAGCGAAGAGCGCAACGGAAGACTAGGCTGGGACGTGGGCAG
GAGCTGGGGAACGGGCGGCGGTAGAGCTCATAGCAGCGGCAAGACAGACC
GCAGGCGCTGCAAAGAAGAGGGCGGCCACCCTTCCAAGAAGCGCCGCACG
CCTAGCCCCGAGGCTGACCGGAGGGCTCCGTCGGCCACCGGGTTGGTCTC
GGCCGAGTTGGCGGGGGCCGATGAGACGGCGGAGGAGGCGGCGGCCTCGC
GGGAGCGGGCGCTGCAGGAGGCCGAGGTGATACGGTGGTGCCAGAAAGTC
TCGAGCTCTCGCGGGATGTCCTCGGCGGGCGGCAGCGGCGGCGACAGCGG
GGTCGGCAGCAGCGTCTCCAGCGGGGACGAGGAGAGGTTCTTCGCCGGAA
GGGTCCTGGACCCGGCCCCCCGGCCGGCGCGCAGCCGCCAAGGCGGTAGC
GGGTCGGGCAGCCGTGATACGAGAATCGCCAGCCTCAACAACGGAAGTCT
GGGCTGGGTGGGCGAGATGATGGAAGAGGCGTCACCAGCTCGGTCGCAGC
AGCACAATGGCAACGGCGACGGCGGGAACGGGAACGGGTTCGGCGCCGAC
GGTAGTGGTGGTTTCCGCGGCGGTTCCTCCAGGGAAGATGAACGAGCGAC
GACAAAAGCGGGCGAATCAGGGGCGGTGTTGCCGGCGGCGAGCTCGGATT
ACCCGAGGGGACGCCAGTCGGGGGCAGAAATCGCTGCCGCTCTCGCATCG
GCTTCAGGTGCCGCCGCCTCCGCCGAGACCGTGCAGGCTTTGGGGAACGA
AGCAGTACCAAAGGCTGCGGCGGGGCCGGGACAAGGGTCGACCTCGTGCC
CGTCCAACACAAACCAAGAAGCTTTTTTCGCGCGGCATACTCTTGAGCCG
AAGCCGCGCCTGCGGGGCACCGTGGCTCCGCTGGCCGCACAGGGGGAGGC
GCCAGAGTCGGGGGAATTTTCCAGCAATTTCGGCCCCGGCGGCGGCGGCG
GCGGCGGCGGGAGCGATGGTGGTAGTGGATCGAGAAGCTGGACTGAGCAC
CTGAGCCCACCCCGAGGCAGCGATGCGCTCGGTTCTCATCGCCTTATTCC
TCGGGAAGAAGAGGTCCTTGCGGCGGCGGCAGTAGCGGCAAAGGCAGCGG
CGGCAGTGTCGGCAGCAGAATCCAGCGGCAGGTGACCTGAGTTACACAGC
GTAGTTGGGGGGGTATTTAGAGTTATCGGGCGGTTTTTTGCGGTGCCGAA
ACTGTTTTTGCCACGGCTCTGCCGCTCAATTACATACTGTTGTTTCTCGT
GAGTGCTGGAGGTAGCGGTGGAAGTGGAGGTGCATTCGTCGCGATGTAAG
ATCGGCGAAGCTTATTTCCGCAGCGGTTTGTTGGTACCCCAGAGCAGCAA
ACATCAGACAGACAAAAAGACGGCTTCATTTTTATTTATGTTTTGCTTCT
TTTTTTCGCGCGCGCGCACGCAAAGATGCCATACGCATGTACTCCCACAA
CAAGCATTCCGTGAACAAAAAAAACACCCCAACTATGATTGCGCAGCTTG
CTGACTTGGTGCCAGTGGTTAGGGTTGCGGTGAGGGAGGGTGATGTAGTG
TGTCTACATACCAACAGCAGTCCCCCTGAAAAACGACTTTTTTTCACAGG
CTGGGACGTAGACCGCTGACACCTGTACACAGACTCTTGTTAAAAGGAAG
GCAGCATCAGGAACGCAGCATTCAACGCAGCCTGTGAGACGAGCAGAAAA
AACGAAGAAAAGCTGTTCTGGTGCTCTTCCTCGCATGTTTTCGCTCTCGA
CGTGCGCAGCCTCTGTATGTCTCGCGCAGGCTTTTTGCTGCTTTCACGCT
TCTACTTACATACCTGCTCGCACGAGGTTCCAACCTTTGACCCCCCCTCC
CCCCCCGCCCCTCCGCCTACATGATGCAGCAGCATGGACTGGCAGGTGCG
GCCGGAAGCTATGATGGGATATTTCACGACTGTGGGTGGGGTGGCTCCTC
CGTCGTTGCTCCGGCCTGGCCGGCGGCGCGGCGCCGCCGGTGCCCGTGCC
CGTGCCCGGCAATCCTCTCCCGGTGTCGCGGCGGCGGCGGCGGCGAGGCA
TGGGGAGCAGCTCGCGGTCCCCGCGGGAGAGCCACATCCTGGAGGGCAGC
CGCCTCCGTGCGGGAGCGGTGCACCGCCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17889:618..2947+

>mRNA_L-elsbetiae_contig17889.5103.1 ID=mRNA_L-elsbetiae_contig17889.5103.1|Name=mRNA_L-elsbetiae_contig17889.5103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3162bp|location=Sequence derived from alignment at L-elsbetiae_contig17889:618..2947+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGGAGACGACGAGCGGCGAGCGGGGGGGGGCGGGAGGCGAGGCCGGGC
GGAGGACGGCAACAGCAGCAGCGGCAGCAGCGGCGGCGGCGGCAGAGACG
GCGGCGGCAAGAGGCCCGGTGTTCGACGACGGCAGGAAGACGGAAACTCT
CGCAATAGCAGCGAAGAGCGCAACGGAAGACTAGGCTGGGACGTGGGCAG
GAGCTGGGGAACGGGCGGCGGTAGAGCTCATAGCAGCGGCAAGACAGACC
GCAGGCGCTGCAAAGAAGAGGGCGGCCACCCTTCCAAGAAGCGCCGCACG
CCTAGCCCCGAGGCTGACCGGAGGGCTCCGTCGGCCACCGGGTTGGTCTC
GGCCGAGTTGGCGGGGGCCGATGAGACGGCGGAGGAGGCGGCGGCCTCGC
GGGAGCGGGCGCTGCAGGAGGCCGAGGTGATACGGTGGTGCCAGAAAGTC
TCGAGCTCTCGCGGGATGTCCTCGGCGGGCGGCAGCGGCGGCGACAGCGG
GGTCGGCAGCAGCGTCTCCAGCGGGGACGAGGAGAGGTTCTTCGCCGGAA
GGGTCCTGGACCCGGCCCCCCGGCCGGCGCGCAGCCGCCAAGGCGGTAGC
GGGTCGGGCAGCCGTGATACGAGAATCGCCAGCCTCAACAACGGAAGTCT
GGGCTGGGTGGGCGAGATGATGGAAGAGGCGTCACCAGCTCGGTCGCAGC
AGCACAATGGCAACGGCGACGGCGGGAACGGGAACGGGTTCGGCGCCGAC
GGTAGTGGTGGTTTCCGCGGCGGTTCCTCCAGGGAAGATGAACGAGCGAC
GACAAAAGCGGGCGAATCAGGGGCGGTGTTGCCGGCGGCGAGCTCGGATT
ACCCGAGGGGACGCCAGTCGGGGGCAGAAATCGCTGCCGCTCTCGCATCG
GCTTCAGGTGCCGCCGCCTCCGCCGAGACCGTGCAGGCTTTGGGGAACGA
AGCAGTACCAAAGGCTGCGGCGGGGCCGGGACAAGGGTCGACCTCGTGCC
CGTCCAACACAAACCAAGAAGCTTTTTTCGCGCGGCATACTCTTGAGCCG
AAGCCGCGCCTGCGGGGCACCGTGGCTCCGCTGGCCGCACAGGGGGAGGC
GCCAGAGTCGGGGGAATTTTCCAGCAATTTCGGCCCCGGCGGCGGCGGCG
GCGGCGGCGGGAGCGATGGTGGTAGTGGATCGAGAAGCTGGACTGAGCAC
CTGAGCCCACCCCGAGGCAGCGATGCGCTCGGTTCTCATCGCCTTATTCC
TCGGGAAGAAGAGGTCCTTGCGGCGGCGGCAGTAGCGGCAAAGGCAGCGG
CGGCAGTGTCGGCAGCAGAATCCAGCGGCAGAGCGGAGACGACGAGCGGC
GAGCGGGGGGGGGCGGGAGGCGAGGCCGGGCGGAGGACGGCAACAGCAGC
AGCGGCAGCAGCGGCGGCGGCGGCAGAGACGGCGGCGGCAAGAGGCCCGG
TGTTCGACGACGGCAGGAAGACGGAAACTCTCGCAATAGCAGCGAAGAGC
GCAACGGAAGACTAGGCTGGGACGTGGGCAGGAGCTGGGGAACGGGCGGC
GGTAGAGCTCATAGCAGCGGCAAGACAGACCGCAGGCGCTGCAAAGAAGA
GGGCGGCCACCCTTCCAAGAAGCGCCGCACGCCTAGCCCCGAGGCTGACC
GGAGGGCTCCGTCGGCCACCGGGTTGGTCTCGGCCGAGTTGGCGGGGGCC
GATGAGACGGCGGAGGAGGCGGCGGCCTCGCGGGAGCGGGCGCTGCAGGA
GGCCGAGGTGATACGGTGGTGCCAGAAAGTCTCGAGCTCTCGCGGGATGT
CCTCGGCGGGCGGCAGCGGCGGCGACAGCGGGGTCGGCAGCAGCGTCTCC
AGCGGGGACGAGGAGAGGTTCTTCGCCGGAAGGGTCCTGGACCCGGCCCC
CCGGCCGGCGCGCAGCCGCCAAGGCGGTAGCGGGTCGGGCAGCCGTGATA
CGAGAATCGCCAGCCTCAACAACGGAAGTCTGGGCTGGGTGGGCGAGATG
ATGGAAGAGGCGTCACCAGCTCGGTCGCAGCAGCACAATGGCAACGGCGA
CGGCGGGAACGGGAACGGGTTCGGCGCCGACGGTAGTGGTGGTTTCCGCG
GCGGTTCCTCCAGGGAAGATGAACGAGCGACGACAAAAGCGGGCGAATCA
GGGGCGGTGTTGCCGGCGGCGAGCTCGGATTACCCGAGGGGACGCCAGTC
GGGGGCAGAAATCGCTGCCGCTCTCGCATCGGCTTCAGGTGCCGCCGCCT
CCGCCGAGACCGTGCAGGCTTTGGGGAACGAAGCAGTACCAAAGGCTGCG
GCGGGGCCGGGACAAGGGTCGACCTCGTGCCCGTCCAACACAAACCAAGA
AGCTTTTTTCGCGCGGCATACTCTTGAGCCGAAGCCGCGCCTGCGGGGCA
CCGTGGCTCCGCTGGCCGCACAGGGGGAGGCGCCAGAGTCGGGGGAATTT
TCCAGCAATTTCGGCCCCGGCGGCGGCGGCGGCGGCGGCGGGAGCGATGG
TGGTAGTGGATCGAGAAGCTGGACTGAGCACCTGAGCCCACCCCGAGGCA
GCGATGCGCTCGGTTCTCATCGCCTTATTCCTCGGGAAGAAGAGGTCCTT
GCGGCGGCGGCAGTAGCGGCAAAGGCAGCGGCGGCAGTGTCGGCAGCAGA
ATCCAGCGGCAGCAGCATGGACTGGCAGGTGCGGCCGGAAGCTATGATGG
GATATTTCACGACTGTGGGTGGGGTGGCTCCTCCGTCGTTGCTCCGGCCT
GGCCGGCGGCGCGGCGCCGCCGGTGCCCGTGCCCGTGCCCGGCAATCCTC
TCCCGGTGTCGCGGCGGCGGCGGCGGCGAGGCATGGGGAGCAGCTCGCGG
TCCCCGCGGGAGAGCCACATCCTGGAGGGCAGCCGCCTCCGTGCGGGAGC
GGTGCACCGCCTCAGCATGGACTGGCAGGTGCGGCCGGAAGCTATGATGG
GATATTTCACGACTGTGGGTGGGGTGGCTCCTCCGTCGTTGCTCCGGCCT
GGCCGGCGGCGCGGCGCCGCCGGTGCCCGTGCCCGTGCCCGGCAATCCTC
TCCCGGTGTCGCGGCGGCGGCGGCGGCGAGGCATGGGGAGCAGCTCGCGG
TCCCCGCGGGAGAGCCACATCCTGGAGGGCAGCCGCCTCCGTGCGGGAGC
GGTGCACCGCCT
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