mRNA_L-elsbetiae_contig1788.5099.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1788.5099.1
Unique NamemRNA_L-elsbetiae_contig1788.5099.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1788.5099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1788contigL-elsbetiae_contig1788:4152..7074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1481
Cds size1146
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1788.5099.1prot_L-elsbetiae_contig1788.5099.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1788 4291..5436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.800812-UTR-L-elsbetiae_contig1788:4151..42901622815744.800812-UTR-L-elsbetiae_contig1788:4151..4290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1788 4152..4290 -
1691683074.7889774-UTR-L-elsbetiae_contig1788:4151..42901691683074.7889774-UTR-L-elsbetiae_contig1788:4151..4290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1788 4152..4290 -
1622815744.8250945-UTR-L-elsbetiae_contig1788:5436..54831622815744.8250945-UTR-L-elsbetiae_contig1788:5436..5483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1788 5437..5483 -
1691683074.8113234-UTR-L-elsbetiae_contig1788:5436..54831691683074.8113234-UTR-L-elsbetiae_contig1788:5436..5483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1788 5437..5483 -
1622815744.8367178-UTR-L-elsbetiae_contig1788:6925..70741622815744.8367178-UTR-L-elsbetiae_contig1788:6925..7074Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1788 6926..7074 -
1691683074.8205369-UTR-L-elsbetiae_contig1788:6925..70741691683074.8205369-UTR-L-elsbetiae_contig1788:6925..7074Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1788 6926..7074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.815035-CDS-L-elsbetiae_contig1788:4290..54361622815744.815035-CDS-L-elsbetiae_contig1788:4290..5436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1788 4291..5436 -
1691683074.8025956-CDS-L-elsbetiae_contig1788:4290..54361691683074.8025956-CDS-L-elsbetiae_contig1788:4290..5436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1788 4291..5436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1788.5099.1

>prot_L-elsbetiae_contig1788.5099.1 ID=prot_L-elsbetiae_contig1788.5099.1|Name=mRNA_L-elsbetiae_contig1788.5099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=382bp
MRHTTGSVLGGLLLIASINVIQTTRALSTSSAECSVERESCRADPACLQC
EQLAVLAGGGEASPPWPDEYLCHEAYPDAFSYPDSQGFDSIACQNEGAIH
CCTFFGDVNSAQDCMSNDAATAFWDCLMQGSFHEGCSVFDMPCHPESSAS
SSSSSSFVVCKEDLLVCEDDPACSSCLSSRSEAFHGDCWDRYPDVFERRG
YEGSLYAGSFCQVTGAEMCCEFEENASAESCLANPAMAAYQACLMDETDC
LPEDMPCSATGLETTSSDDVPTSTSSMGSGRATPAPAAGTTAAPIDPTTT
DPSSAAGPGGLTTTPSPSTSAASSSARGLDLTPSPLVDDTPETVDFANGA
TTVGLVMIDSSRATVLLWASFSVAAATLLVV*
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mRNA from alignment at L-elsbetiae_contig1788:4152..7074-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1788.5099.1 ID=mRNA_L-elsbetiae_contig1788.5099.1|Name=mRNA_L-elsbetiae_contig1788.5099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2923bp|location=Sequence derived from alignment at L-elsbetiae_contig1788:4152..7074- (Laminarionema elsbetiae ELsaHSoW15)
CATATGTGTGGCCGGTACCAAGCTCACCGCGACGAGCCAGTGTTGCTTCA
ACGTAACAGAGCCTTGGCTGCACCGTCACCCCATACGACGCCACCCTCCT
CAGTTGGGGCGCCCCCACCGAGTGCTTCATCGATCTACAGGCGGAGCCGG
TAAGGGAAAATAACCAGTACATAGACTAGAAGACCAGGGCCGCCTGTCTG
TGTAAAAATTTTGTACCCACACATATGTATACGGCAGCGGTAGTTCTCGG
TAGGCTGAACTCTATCGATGCTTGAAGGCGCCCCAGCATATAGGGCAGAT
CATTTGTCCAATAGACACCCGGGTGCCCCCTCTACAGCGTGGTACGTGTA
GATACGACATACCCCTTTGTAATACAAGAGTATCGGCTGTGTGCTTGATG
CTATTTATGAAAGTCTTACATCTTACAGCACAGTAAGTAGTATTTAGTAG
TGCGGGCAGCAGCACTGAAACAGCAGCACTGAAACAGGTTGACTCGGTAG
ATCTCCTCAGGCACGCACATGCATATCAGAGGTATCGCGTAGGTATGTGC
GTTCAGAGGACCGGTGTCACCGATACTAATGGATGGATTTTGTTTGTTTA
TGTTTGTATGTTTGTTTGTGTGTTAGTCTGTATGTTGTTGGTGTGTTGTG
ACCGTGTTTGTTTGTCGATTGATTATTTGTTATGTTTCCTTCTTGTTGGA
AGATGAGTTTGTGAACACAAAGTGTTGTATGTGTAGACTACGAGTAGGAT
GTTCAGAATTGTCAAGAGATAGCTATCCATAGCAGAAGATGAAGCAGAGT
TGGAACATTTGATTTGTTAGTATAGACAGATTCTTCTAAGAATGAATGTT
GATGTTATATGTCAGAGGTTATATCGTAAGGCGTTTTCTTTCGCGTGTTG
GTACAAGTACGGATATGTTGTGTGTGTATATTGAAGGAATCTGCAATTGT
CGGATGGCAAACGAAATAATAATTGATTTTCAATAATAATATGATTTAGT
ATCGGGGTTATCGCACAGGGGTGTGCGACCTAACAGCAGAACCAAAACAT
TTACTTCGAAGTAAAAGGTTTCCGCACAGGGGTCGGGACTAGATATCGCA
CATACATGTCGGGGCTATCGCACACCTGTGCGAAAAAACAGCCAGTTTGA
AAGCATTTCAAAAGTCGATCGCACACTGTGCGGTAGCCCGCACTACTACG
GTAATCTAGTCTATCTTAGACTAATATGTAGACTAGATGCTTTCCAAGTT
GTTTCGAGAGAGAAGAGCGCTGGGAATCAGAAGTTTGACACATAAAACAA
TATGAACGATATGCGTAAGGGGGGTGAGACAAAGTCACGAAGAGACATAG
GGTTTCGTGCTCATTTCAGCTTCTTGGGTCGCATCCCAAAGCCGGTGCTT
CAGTTTACCCAGCACTTGGCAACAAGAGAGTTTTCAAATCTTGGTTCTTC
AACTATCCCCACAACTTGATCCCAAGGGCACAAATATTTCAATATTTCAA
ACTTTGTGGCTGCGGCAAATCTTGACCTGTCACACCTCCCGTGCCTCCTT
TGCTGCCTGCCTCGTGCTCTATCGCCGGCCGGACATTGCAGCTGTCGCAA
TCGGAAAGACAGCTACATACGCCAACCGACCATTCGCGATGCGTCATACA
ACGGGCTCAGTGCTGGGAGGCTTGCTGCTTATTGCCAGCATCAACGTGAT
CCAAACCACGAGGGCTCTATCGACCAGCAGCGCTGAATGCAGCGTGGAAC
GGGAAAGTTGCCGCGCAGATCCTGCCTGCCTCCAATGCGAGCAGTTGGCG
GTTTTGGCAGGAGGTGGGGAGGCTTCTCCGCCGTGGCCAGACGAATATTT
GTGCCACGAGGCCTACCCGGACGCGTTTTCGTACCCTGATTCGCAGGGGT
TTGATAGCATCGCTTGCCAAAATGAGGGGGCAATACACTGCTGCACATTT
TTCGGCGACGTGAATTCTGCGCAGGACTGCATGTCGAACGACGCCGCGAC
GGCATTTTGGGATTGCCTCATGCAAGGTAGTTTTCACGAGGGCTGCTCGG
TGTTCGATATGCCGTGCCACCCGGAGTCTTCAGCATCATCATCGTCATCA
TCATCATTCGTCGTCTGCAAGGAAGATTTACTGGTGTGCGAGGATGACCC
AGCTTGCAGTTCGTGCCTGTCTTCTCGGTCAGAGGCATTCCACGGCGACT
GCTGGGATCGCTACCCGGACGTGTTTGAAAGGCGCGGATACGAGGGAAGC
TTGTATGCGGGCAGCTTTTGCCAGGTAACCGGCGCCGAAATGTGTTGCGA
GTTCGAGGAGAACGCCTCCGCCGAGAGTTGCTTGGCCAACCCCGCCATGG
CTGCCTACCAGGCTTGCTTGATGGATGAGACGGACTGCCTGCCCGAAGAT
ATGCCTTGTTCCGCCACTGGACTGGAAACGACATCATCCGACGATGTTCC
CACCTCGACCTCGTCCATGGGATCCGGCCGCGCCACTCCCGCACCCGCGG
CTGGGACCACGGCAGCCCCTATCGACCCGACCACCACCGACCCTTCGTCG
GCTGCTGGACCCGGAGGTTTGACGACGACACCGTCCCCTTCTACATCGGC
CGCAAGCAGCAGCGCCAGGGGCCTTGACCTGACGCCGTCGCCCTTGGTAG
ATGATACCCCTGAGACGGTGGACTTCGCTAATGGGGCCACAACAGTCGGG
CTGGTGATGATAGACTCTTCAAGGGCGACGGTGCTGTTGTGGGCGAGCTT
CTCGGTCGCAGCGGCCACCCTGCTGGTGGTGTAGGTAGGCATGCTTCTTG
TTTTTCAGCCCGTGTAGGCTAGTCTCTAGTTGCAAAAAGGCTTGATTATA
CACAGCTGCATAGATTAACACGTCGGGCTAGCGTAATTCGAGCATAGCGA
AAACCTGGGTAGCCTGAGTGTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1788:4152..7074-

>mRNA_L-elsbetiae_contig1788.5099.1 ID=mRNA_L-elsbetiae_contig1788.5099.1|Name=mRNA_L-elsbetiae_contig1788.5099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2292bp|location=Sequence derived from alignment at L-elsbetiae_contig1788:4152..7074- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTCATACAACGGGCTCAGTGCTGGGAGGCTTGCTGCTTATTGCCAG
CATCAACGTGATCCAAACCACGAGGGCTCTATCGACCAGCAGCGCTGAAT
GCAGCGTGGAACGGGAAAGTTGCCGCGCAGATCCTGCCTGCCTCCAATGC
GAGCAGTTGGCGGTTTTGGCAGGAGGTGGGGAGGCTTCTCCGCCGTGGCC
AGACGAATATTTGTGCCACGAGGCCTACCCGGACGCGTTTTCGTACCCTG
ATTCGCAGGGGTTTGATAGCATCGCTTGCCAAAATGAGGGGGCAATACAC
TGCTGCACATTTTTCGGCGACGTGAATTCTGCGCAGGACTGCATGTCGAA
CGACGCCGCGACGGCATTTTGGGATTGCCTCATGCAAGGTAGTTTTCACG
AGGGCTGCTCGGTGTTCGATATGCCGTGCCACCCGGAGTCTTCAGCATCA
TCATCGTCATCATCATCATTCGTCGTCTGCAAGGAAGATTTACTGGTGTG
CGAGGATGACCCAGCTTGCAGTTCGTGCCTGTCTTCTCGGTCAGAGGCAT
TCCACGGCGACTGCTGGGATCGCTACCCGGACGTGTTTGAAAGGCGCGGA
TACGAGGGAAGCTTGTATGCGGGCAGCTTTTGCCAGGTAACCGGCGCCGA
AATGTGTTGCGAGTTCGAGGAGAACGCCTCCGCCGAGAGTTGCTTGGCCA
ACCCCGCCATGGCTGCCTACCAGGCTTGCTTGATGGATGAGACGGACTGC
CTGCCCGAAGATATGCCTTGTTCCGCCACTGGACTGGAAACGACATCATC
CGACGATGTTCCCACCTCGACCTCGTCCATGGGATCCGGCCGCGCCACTC
CCGCACCCGCGGCTGGGACCACGGCAGCCCCTATCGACCCGACCACCACC
GACCCTTCGTCGGCTGCTGGACCCGGAGGTTTGACGACGACACCGTCCCC
TTCTACATCGGCCGCAAGCAGCAGCGCCAGGGGCCTTGACCTGACGCCGT
CGCCCTTGGTAGATGATACCCCTGAGACGGTGGACTTCGCTAATGGGGCC
ACAACAGTCGGGCTGGTGATGATAGACTCTTCAAGGGCGACGGTGCTGTT
GTGGGCGAGCTTCTCGGTCGCAGCGGCCACCCTGCTGGTGGTGTAGATGC
GTCATACAACGGGCTCAGTGCTGGGAGGCTTGCTGCTTATTGCCAGCATC
AACGTGATCCAAACCACGAGGGCTCTATCGACCAGCAGCGCTGAATGCAG
CGTGGAACGGGAAAGTTGCCGCGCAGATCCTGCCTGCCTCCAATGCGAGC
AGTTGGCGGTTTTGGCAGGAGGTGGGGAGGCTTCTCCGCCGTGGCCAGAC
GAATATTTGTGCCACGAGGCCTACCCGGACGCGTTTTCGTACCCTGATTC
GCAGGGGTTTGATAGCATCGCTTGCCAAAATGAGGGGGCAATACACTGCT
GCACATTTTTCGGCGACGTGAATTCTGCGCAGGACTGCATGTCGAACGAC
GCCGCGACGGCATTTTGGGATTGCCTCATGCAAGGTAGTTTTCACGAGGG
CTGCTCGGTGTTCGATATGCCGTGCCACCCGGAGTCTTCAGCATCATCAT
CGTCATCATCATCATTCGTCGTCTGCAAGGAAGATTTACTGGTGTGCGAG
GATGACCCAGCTTGCAGTTCGTGCCTGTCTTCTCGGTCAGAGGCATTCCA
CGGCGACTGCTGGGATCGCTACCCGGACGTGTTTGAAAGGCGCGGATACG
AGGGAAGCTTGTATGCGGGCAGCTTTTGCCAGGTAACCGGCGCCGAAATG
TGTTGCGAGTTCGAGGAGAACGCCTCCGCCGAGAGTTGCTTGGCCAACCC
CGCCATGGCTGCCTACCAGGCTTGCTTGATGGATGAGACGGACTGCCTGC
CCGAAGATATGCCTTGTTCCGCCACTGGACTGGAAACGACATCATCCGAC
GATGTTCCCACCTCGACCTCGTCCATGGGATCCGGCCGCGCCACTCCCGC
ACCCGCGGCTGGGACCACGGCAGCCCCTATCGACCCGACCACCACCGACC
CTTCGTCGGCTGCTGGACCCGGAGGTTTGACGACGACACCGTCCCCTTCT
ACATCGGCCGCAAGCAGCAGCGCCAGGGGCCTTGACCTGACGCCGTCGCC
CTTGGTAGATGATACCCCTGAGACGGTGGACTTCGCTAATGGGGCCACAA
CAGTCGGGCTGGTGATGATAGACTCTTCAAGGGCGACGGTGCTGTTGTGG
GCGAGCTTCTCGGTCGCAGCGGCCACCCTGCTGGTGGTGTAG
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