mRNA_L-elsbetiae_contig1788.5098.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1788.5098.1
Unique NamemRNA_L-elsbetiae_contig1788.5098.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1788.5098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1788contigL-elsbetiae_contig1788:1484..3342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size429
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1788.5098.1prot_L-elsbetiae_contig1788.5098.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1788 1510..3227 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.8713593-UTR-L-elsbetiae_contig1788:1483..15091622815744.8713593-UTR-L-elsbetiae_contig1788:1483..1509Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1788 1484..1509 +
1691683074.83064-UTR-L-elsbetiae_contig1788:1483..15091691683074.83064-UTR-L-elsbetiae_contig1788:1483..1509Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1788 1484..1509 +
1622815744.9095874-UTR-L-elsbetiae_contig1788:3227..33421622815744.9095874-UTR-L-elsbetiae_contig1788:3227..3342Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1788 3228..3342 +
1691683074.8735552-UTR-L-elsbetiae_contig1788:3227..33421691683074.8735552-UTR-L-elsbetiae_contig1788:3227..3342Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1788 3228..3342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.88499-CDS-L-elsbetiae_contig1788:1509..16081622815744.88499-CDS-L-elsbetiae_contig1788:1509..1608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1788 1510..1608 +
1691683074.8500485-CDS-L-elsbetiae_contig1788:1509..16081691683074.8500485-CDS-L-elsbetiae_contig1788:1509..1608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1788 1510..1608 +
1622815744.896798-CDS-L-elsbetiae_contig1788:3038..32271622815744.896798-CDS-L-elsbetiae_contig1788:3038..3227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1788 3039..3227 +
1691683074.862228-CDS-L-elsbetiae_contig1788:3038..32271691683074.862228-CDS-L-elsbetiae_contig1788:3038..3227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1788 3039..3227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1788.5098.1

>prot_L-elsbetiae_contig1788.5098.1 ID=prot_L-elsbetiae_contig1788.5098.1|Name=mRNA_L-elsbetiae_contig1788.5098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MTGILMPDDREAPLSKLSAASLEDISYVVDPSKVDPYRLPNVGNIVGGAR
LNSAASGALCRKSVAEKTTVGLLDEAGVVVEETEGVMITTIMCDN*
back to top

mRNA from alignment at L-elsbetiae_contig1788:1484..3342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1788.5098.1 ID=mRNA_L-elsbetiae_contig1788.5098.1|Name=mRNA_L-elsbetiae_contig1788.5098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1859bp|location=Sequence derived from alignment at L-elsbetiae_contig1788:1484..3342+ (Laminarionema elsbetiae ELsaHSoW15)
ACGAGGACACGTTTGATACGGAGCTCATGACCGGGATACTCATGCCAGAT
GATCGGGAAGCTCCCCTTTCGAAGCTGAGCGCGGCGAGCCTGGAAGACAT
CTCCTACGTCGTCGACCCCAGCAAGGTGAACCGCCTCTCAAAAGAAGCAC
AGAAATGAGGTCCTTCTTGTTCAGTGATCGCCGCTGAGTCCAGGATATCT
GGCGCGTCAAGCGTAGTCCTGCTGCTCTGGTACCCCTTGAGGGCTGAGAA
GAAATATCGAGATGCGAATCGATGCCCCAGCCGCAGAGTACAGACGGTTG
AGGGCGGCCCAAAATTACGTCGGGCGGGGCCTCGCAAAAAACTCGCACGA
AAAATACAGAGGCCTGCCCTCTCGAGGGTCGCGCTCGTCGCGCCAGTGGA
ACAGCCCCCAGGAGCTTACATTCTTCATCACAGACGAAACAACCCACAGG
GGATGCGATGTACTGCTCATAGCTAGCGTCCGTGCAAGGGCATCATACCC
TGAGGACCGCTCCCCGAACGTCAAATCAGAGCCGCCTTCGAACGCACTTA
CTTTGTCGGGCTTGGGGACCAGCAGAAGCAGCAGCTCGGTAGTTAGTACC
CCTGCAACTAGTTTGTTGGCCACTCTGCCAGGGGGCGCTCTGCACACCTG
AGACTCTAATCCCGCCGATGTGCGTAGTCTCCTTGTGGATTAATCACCTC
TGTTTTGGGCCAAAACCGCCCAAAATGGTGCGCTTTGTGCGTGCGAACTC
GCTCTCTCATCTTTCTCCCATATAAAGCCCCCGTGGCACGCTTGAGATCC
AAGAGTTAGTGCCCTGCAGTTATTGGCGCCTGATTTTTTGCCTACTATGC
ACCAAGGTATCTTGTCTACGGATGAATGTTCTCACCTGGCCTGGATAAAC
TCTCTTCGCCGAACTTTTTTTTTTCCCTCCCATTATTGGCATATTCGTCG
TCTGCCCCACTGGCCCCCATACTCCACTACGACTAGCTAGACGACCCAAC
CGGGGCCACACAAGAGGGGGGGTTTACTGAGGCTCTGTGATTGGCCGCGC
CAGAAACGTTCCTCCTTAGAAACGATTTCGCAAACATATATCATTGAAGG
CACGAATGAACCCAACAATTTGCACAAAACGATGAATCCGCAGACCGTGT
AAGTACACAGGGAAGTATCTAGCTTGCATACAACAGCCTATCGAAGAACT
CAAGGTTATACTGGCTGCACACTTGTTTCCCAGAGTATGCTGCTTGGAGG
AAGATGATTCCGCAACACACTATCGCTTAAATTAATGATATGTGCTGATA
TTTGCCCTGATATTTACTTGAAAGAGAAAACACAAATACATCAGATGCGC
ACAGACTTCTGCCATGTAAGCGAGCTACCTCTCCCCCAGGGCGAGATGCC
TGCAAATGTTACCCTGGTTCTTTTGGGCCCCACATTCAGACGGTTGCATT
GATTGGTGTACTCAGCGCTCACGCTCATACTGCGCAGCGCTGGTCTTGTT
ACTCATGATTGTTTCTGCGTCTCTCTGCTCGCCCTTCTCATCTCTCCACG
TCTAGGTGGACCCCTACAGGCTGCCTAATGTTGGGAATATTGTAGGAGGA
GCTAGACTCAACAGCGCAGCAAGTGGTGCACTATGCAGGAAAAGCGTAGC
TGAGAAGACAACGGTGGGACTGTTGGACGAGGCCGGGGTTGTTGTTGAGG
AGACTGAAGGCGTCATGATCACGACCATCATGTGCGACAATTGAGCGGAC
CAATCGAAGGCTCCTCGCGCGACTTAAAGGGCGTGCGAGAGAGCGTACGG
TAGATCGGGGGAAAACCGTTGTGAGAGTCATGAAAACGATGCTCAGGAAA
TTTTTGCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1788:1484..3342+

>mRNA_L-elsbetiae_contig1788.5098.1 ID=mRNA_L-elsbetiae_contig1788.5098.1|Name=mRNA_L-elsbetiae_contig1788.5098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig1788:1484..3342+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGGGATACTCATGCCAGATGATCGGGAAGCTCCCCTTTCGAAGCT
GAGCGCGGCGAGCCTGGAAGACATCTCCTACGTCGTCGACCCCAGCAAGA
TGACCGGGATACTCATGCCAGATGATCGGGAAGCTCCCCTTTCGAAGCTG
AGCGCGGCGAGCCTGGAAGACATCTCCTACGTCGTCGACCCCAGCAAGGT
GGACCCCTACAGGCTGCCTAATGTTGGGAATATTGTAGGAGGAGCTAGAC
TCAACAGCGCAGCAAGTGGTGCACTATGCAGGAAAAGCGTAGCTGAGAAG
ACAACGGTGGGACTGTTGGACGAGGCCGGGGTTGTTGTTGAGGAGACTGA
AGGCGTCATGATCACGACCATCATGTGCGACAATTGAGTGGACCCCTACA
GGCTGCCTAATGTTGGGAATATTGTAGGAGGAGCTAGACTCAACAGCGCA
GCAAGTGGTGCACTATGCAGGAAAAGCGTAGCTGAGAAGACAACGGTGGG
ACTGTTGGACGAGGCCGGGGTTGTTGTTGAGGAGACTGAAGGCGTCATGA
TCACGACCATCATGTGCGACAATTGA
back to top