mRNA_L-elsbetiae_contig1787.5094.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1787.5094.1
Unique NamemRNA_L-elsbetiae_contig1787.5094.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1787.5094.1 vs. uniprot
Match: D7FZG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG5_ECTSI)

HSP 1 Score: 320 bits (821), Expect = 3.410e-102
Identity = 190/248 (76.61%), Postives = 204/248 (82.26%), Query Frame = 1 
Query:  676 LEGLDLESLGISMLDDESAEEVQEQLRREWGAVSVENEQTDYEVDTAELQSKLRQAMEVLGCQSWDVGAVLTTDKEVSRLNRQYRGMTTSTDILSFPTNDMSSAPGVLPKVPHSRPHRRLALREMQVRFPAEMDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXAAAEGRGRTEXXXXXXWWDSERGVSGAMSRVYDVQERASMLLVHGLIHLLGYDHETEKDYQAMVAVEEEVLQAVFGKG 1419
            +EGLDLESLGIS++DDE AEEVQEQLRREWG  SV+NEQ +YE+DTAELQSK+RQ MEVLGCQ+WDVGAVLTTDKEV RLNRQYRGM+TSTDILSFP +DMS +PGVLPKV                RFPAEMDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXX                  DSERGVSGAMSRV+DVQERASMLLVHGLIHLLGYDHETE DY+AMVAVEEEVL+AVFG G
Sbjct:   74 MEGLDLESLGISIMDDEDAEEVQEQLRREWGTASVQNEQKEYEIDTAELQSKMRQTMEVLGCQAWDVGAVLTTDKEVFRLNRQYRGMSTSTDILSFPNHDMSGSPGVLPKV----------------RFPAEMDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXXXXX-------------XDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVLRAVFGPG 292
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BLAST of mRNA_L-elsbetiae_contig1787.5094.1 vs. uniprot
Match: A0A835Z8A0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A0_9STRA)

HSP 1 Score: 170 bits (430), Expect = 2.140e-45
Identity = 104/243 (42.80%), Postives = 148/243 (60.91%), Query Frame = 1 
Query:  706 ISMLDDESAEEVQEQLRREWGAVSVENEQTDYEVDTAELQSKLRQAMEVLGCQSWDVGAVLTTDKEVSRLNRQYRGMTTSTDILSFPTNDMSSAPGVLPKVPHSRPHRRLALREM-QVRFPAEMDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXAAAEGRGRTEXXXXXXWWDSERGVSGAMSRVYDVQERASMLLVHGLIHLLGYDHETEKDYQAMVAVEEEVLQAVFGKGAASA 1431
            I +L+  S EE+  +     G V V N Q  Y++DT +L+  +R A ++LG  +WDV   LTTDK V +LN QYRG   STDILSF  N++  +  +L    HS   +     ++ +VR P EMDLG+M +SLAYVDR I++D+ E                  +G+ + E        + +RGVSGAMSRV+ VQER  +L +HGL+HL+GYDHET++DY+ MVA EEE+L+A+  + +ASA
Sbjct:   15 IEVLEIPSDEELAAECASRTGTVYVRNTQRSYKIDTQQLEQHIRAARDLLGYSNWDVSLWLTTDKTVRKLNSQYRGKDKSTDILSFSYNELQCSYRLLHGGSHSTKLQVETPGKLAKVRHPEEMDLGEMMVSLAYVDRVIQQDKAEQ-----------------DGQSQEE--------EHDRGVSGAMSRVFTVQERLPLLCIHGLLHLVGYDHETDEDYEVMVAREEELLRALKLEPSASA 232
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BLAST of mRNA_L-elsbetiae_contig1787.5094.1 vs. uniprot
Match: A0A4D9DAX9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAX9_9STRA)

HSP 1 Score: 121 bits (304), Expect = 5.550e-27
Identity = 81/223 (36.32%), Postives = 112/223 (50.22%), Query Frame = 1 
Query:  766 GAVSVENEQTDYEVDTAELQSKLRQAMEVLGCQSWDVGAVLTTDKEVSRLNRQYRGMTTSTDILSFPTNDMSSAPGVLPKVPHSRPHRRLALREMQVRFPAEMDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXAAAEGRGRTEXXXXXXWWDSERGVSGAMSRVYDVQERASMLLVHGLIHLLGYDHETEKDYQAMVAVEEEVLQAVFGKGAASAA 1434
            G + + N Q    +D   L +++R  +E++G    DV   LT D+ +   N +YRG  T+TDILSFP ++   APGV    P S         E         DLGDM +S+ YV RQ +RD+ +                                W  ERG SGAM+RV+ VQ+R   L++HG++HLLG+DHET+K+Y  MV  E+ VL A F K  AS A
Sbjct:   75 GTIQIRNSQRTIALDLDLLNTQVRAILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYE-APGV----PTS---------ESWALTGEVKDLGDMIVSVPYVQRQCQRDQVDWFEKGENL------------------------WSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKEYNEMVKEEDRVL-AEFKKKFASTA 258
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BLAST of mRNA_L-elsbetiae_contig1787.5094.1 vs. uniprot
Match: W7UC15_9STRA (Rrna maturation factor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC15_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.320e-26
Identity = 80/221 (36.20%), Postives = 111/221 (50.23%), Query Frame = 1 
Query:  766 GAVSVENEQTDYEVDTAELQSKLRQAMEVLGCQSWDVGAVLTTDKEVSRLNRQYRGMTTSTDILSFPTNDMSSAPGVLPKVPHSRPHRRLALREMQVRFPAEMDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXAAAEGRGRTEXXXXXXWWDSERGVSGAMSRVYDVQERASMLLVHGLIHLLGYDHETEKDYQAMVAVEEEVLQAVFGKGAAS 1428
            G + + N Q    +D   L +++R  +E++G    DV   LT D+ +   N +YRG  T+TDILSFP ++   APG+    P S         E         DLGDM +S+ YV RQ +RD+ +                                W  ERG SGAM+RV+ VQ+R   L++HG++HLLG+DHET+KDY  MV  E+ VL A F K  AS
Sbjct:  211 GTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYE-APGI----PTS---------ESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENL------------------------WSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVL-AEFKKKFAS 392
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BLAST of mRNA_L-elsbetiae_contig1787.5094.1 vs. uniprot
Match: A0A7S1ZIF3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIF3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.720e-26
Identity = 76/200 (38.00%), Postives = 113/200 (56.50%), Query Frame = 1 
Query:  805 VDTAELQSKLRQAMEVLGCQSWDVGAVLTTDKEVSRLNRQYRGMTTSTDILSFP-TNDMSSAPGVLPKVPHSRPHRRLALREMQVRFPAEMDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXAAAEGRGRTEXXXXXXWWDSERGVSGAMSRVYDVQERASMLLVHGLIHLLGYDHETEKDYQAMVAVEEEVLQ 1401
            +D + LQ K+    +++G +++DV  +LT D+ ++ +N   RGM   TDILSFP  N++   PGVL               + +       +LG+M + + Y++R+I+ DRE                         EXXXXXX     RGVSGAM++VYDV+ER  ML VHG++HL+GYDHET++D++ MV  EEEVL+
Sbjct:  124 IDISTLQHKVSIIRQIIGYETYDVSILLTDDELITEINNDTRGMNKPTDILSFPFDNEVIVEPGVL--------------GDAEFDHEDFYNLGEMIVDVPYIERRIEEDREYY-----------------------EXXXXXXXXXXXRGVSGAMAKVYDVEERIGMLFVHGMLHLVGYDHETDEDFELMVTKEEEVLK 286
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BLAST of mRNA_L-elsbetiae_contig1787.5094.1 vs. uniprot
Match: F0XVF3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF3_AURAN)

HSP 1 Score: 116 bits (290), Expect = 4.910e-26
Identity = 77/212 (36.32%), Postives = 108/212 (50.94%), Query Frame = 1 
Query:  766 GAVSVENEQTDYEVDTAELQSKLRQAMEVLGCQSWDVGAVLTTDKEVSRLNRQYRGMTTSTDILSFPTNDMSSAPGVLPKVPHSRPHRRLALREMQVRFPAEMDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXAAAEGRGRTEXXXXXXWWDSERGVSGAMSRVYDVQERASMLLVHGLIHLLGYDHETEKDYQAMVAVEEEVLQ 1401
            G V + N Q    +D   ++S  R  +E L C  +DVG  LTTD  + + N ++RGM  STDILSFP +D   APG LP               +      +++LGDM +S+ YV R+ ++D                        GR             RGV+ AM+ V DV+ER  MLLVHGL HLL YDHET+ +++ MVA+E+E+L+
Sbjct:   37 GTVLIRNTQRSIPIDVDAVESVTRALLERLRCSEFDVGIWLTTDATIRKYNTRFRGMRKSTDILSFPFHD-ELAPGALPDA-------------VDRDDEDDLNLGDMVVSVPYVRRRAEKDG-----------------------GRDHAPG--------RGVAAAMAPVADVEERIHMLLVHGLCHLLNYDHETDDEFEDMVALEDELLE 203
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BLAST of mRNA_L-elsbetiae_contig1787.5094.1 vs. uniprot
Match: A0A1Z5JES7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JES7_FISSO)

HSP 1 Score: 111 bits (278), Expect = 3.770e-24
Identity = 80/212 (37.74%), Postives = 114/212 (53.77%), Query Frame = 1 
Query:  766 GAVSVENEQTDY-EVDTAELQSKLRQAMEVLGCQSWDVGAVLTTDKEVSRLNRQYRGMTTSTDILSFPTNDMSSAPGVLPKVPHSRPHRRLALREMQVRFPAEMDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXAAAEGRGRTEXXXXXXWWDSERGVSGAMSRVYDVQERASMLLVHGLIHLLGYDHETEKDYQAMVAVEEEVL 1398
            G +  +N+QT+  E+D A L   L +    +G +++ V   L  D+E+  +N + RG+   TDILSFP ++    PG L                 Q   P    LGD+ + + YV R+ + D+E      XXXXXXXXX                     ERGVSGAM+R+YD +ER  MLL+HG++HL+GYDHE ++DY+ MVA EEE+L
Sbjct:   51 GKILFQNDQTNVLEIDEARLLETLNRIRRHIGYETYGVSLELIGDEEMQEINLESRGVDAPTDILSFPFSEYIE-PGTL--------------EPPQFDIPDYYQLGDLLVDVPYVMRRCQEDKEYYEQLDXXXXXXXXX---------------------ERGVSGAMARIYDAEERIHMLLIHGMLHLVGYDHEDDEDYELMVAKEEEIL 226
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BLAST of mRNA_L-elsbetiae_contig1787.5094.1 vs. uniprot
Match: B7FP01_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FP01_PHATC)

HSP 1 Score: 106 bits (265), Expect = 7.050e-23
Identity = 74/220 (33.64%), Postives = 109/220 (49.55%), Query Frame = 1 
Query:  766 GAVSVENEQTDYEVDTAELQSKLRQAMEVLGCQSWDVGAVLTTDKEVSRLNRQYRGMTTSTDILSFPTNDMSSAPGVL-PKVPHSRPHRRLALREMQVRFPAEMDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXAAAEGRGRTEXXXXXXWWDSERGVSGAMSRVYDVQERASMLLVHGLIHLLGYDHETEKDYQAMVAVEEEVLQAVFGKGA 1422
            G + VEN Q    +D   L++ + +  +++G +++DV  +L  D+E+   N + RGM   TD+LSFP  + +  PGVL P V               V      ++GDM I + YV R  + D +                                  D +RGVS AM+ V D +ER +MLLVHG++HL+GYDH  + DYQ MVA EEE+L+ + GK A
Sbjct:   16 GDIYVENNQESLNIDLERLKATIAKIRDLMGYRTYDVSLLLVDDQEMRETNEETRGMDEPTDVLSFPFTE-AIEPGVLTPPV---------------VDIGDYYNMGDMMIDVPYVIRACQDDAKYSHSDLE---------------------------DEDRGVSAAMAMVMDPEERINMLLVHGMLHLVGYDHIDDDDYQLMVAKEEEILR-LLGKKA 191
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BLAST of mRNA_L-elsbetiae_contig1787.5094.1 vs. uniprot
Match: A0A7S2RF28_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RF28_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.150e-22
Identity = 77/222 (34.68%), Postives = 106/222 (47.75%), Query Frame = 1 
Query:  766 GAVSVENEQTDYEVDTAELQSKLRQAMEVLGCQSWDVGAVLTTDKEVSRLNRQYRGMTTSTDILSFPTNDMSSAPGVLPKVPHSRPHRRLALREMQVRFPAEMDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXAAAEGRGRTEXXXXXXWWDSER----GVSGAMSRVYDVQERASMLLVHGLIHLLGYDHETEKDYQAMVAVEEEVLQAVFGKG 1419
            G V + + Q    VDT  L+ ++R  + VL     DVG  L++D+ V   N +YRGM  STDILSFP  D   AP  LP              EMQ     +M+LGDM +S+ YV R  KRD  +               A + G            W  E     GVSG M   +  Q R ++L++HG+ HLLG+DHE + +Y  M A EE +++ +  KG
Sbjct:   63 GTVLIRHTQRTVPVDTELLEEQVRAILAVLELPHMDVGLWLSSDRTVRDWNTRYRGMRKSTDILSFPFYDQLRAPDPLP--------------EMQCE--DDMNLGDMIVSVPYVARACKRDHRD---------------ALSMGEDS---------WTGESVQLGGVSGEMMHYFSPQPRLALLVIHGICHLLGHDHEEDSEYALMRAEEERLIRGLEAKG 244
[Close]
BLAST of mRNA_L-elsbetiae_contig1787.5094.1 vs. uniprot
Match: A0A1Z5K9I9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9I9_FISSO)

HSP 1 Score: 106 bits (265), Expect = 2.030e-22
Identity = 77/212 (36.32%), Postives = 110/212 (51.89%), Query Frame = 1 
Query:  766 GAVSVENEQTDY-EVDTAELQSKLRQAMEVLGCQSWDVGAVLTTDKEVSRLNRQYRGMTTSTDILSFPTNDMSSAPGVLPKVPHSRPHRRLALREMQVRFPAEMDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXAAAEGRGRTEXXXXXXWWDSERGVSGAMSRVYDVQERASMLLVHGLIHLLGYDHETEKDYQAMVAVEEEVL 1398
            G +  +N+ +D  ++D A L   L +    +G +++ V   L  D+E+  +N + RG+   +DILSFP +D    PG L                 Q   P    LGD+ + + YV R+ + D+E        XXXXXXX                     ERGVSGAM+R+YD +ER  MLLVHG++HL+GYDHE + DY+ MVA EEE+L
Sbjct:   49 GKILFQNDLSDVLQIDEARLLETLSRIRRHIGYETYGVSLELIGDEEMQAVNLESRGVDAPSDILSFPFSDYIE-PGTL--------------EPPQFDIPDYYQLGDLLVDVPYVMRRCQEDKEYYEQLDESXXXXXXX---------------------ERGVSGAMARIYDAEERIHMLLVHGMLHLVGYDHEDDDDYELMVAKEEEIL 224
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1787.5094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZG5_ECTSI3.410e-10276.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z8A0_9STRA2.140e-4542.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DAX9_9STRA5.550e-2736.32Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7UC15_9STRA2.320e-2636.20Rrna maturation factor n=1 Tax=Nannochloropsis gad... [more]
A0A7S1ZIF3_9STRA2.720e-2638.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
F0XVF3_AURAN4.910e-2636.32Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1Z5JES7_FISSO3.770e-2437.74Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
B7FP01_PHATC7.050e-2333.64Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2RF28_9STRA1.150e-2234.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5K9I9_FISSO2.030e-2236.32Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1787contigL-elsbetiae_contig1787:13006..17379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score321.6
Seed ortholog evalue5.5e-85
Seed eggNOG ortholog2880.D7FZG5
Preferred nameYBEY
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGs2R6QZ@2759,COG0319@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionEndoribonuclease YbeY
Ec32 orthologEc-19_003220.1
Exons6
Model size1797
Cds size1296
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1787.5094.1prot_L-elsbetiae_contig1787.5094.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1787 13339..17211 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.547745-UTR-L-elsbetiae_contig1787:13005..133381622815744.547745-UTR-L-elsbetiae_contig1787:13005..13338Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1787 13006..13338 -
1691683074.6159356-UTR-L-elsbetiae_contig1787:13005..133381691683074.6159356-UTR-L-elsbetiae_contig1787:13005..13338Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1787 13006..13338 -
1622815744.6251369-UTR-L-elsbetiae_contig1787:17211..173791622815744.6251369-UTR-L-elsbetiae_contig1787:17211..17379Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1787 17212..17379 -
1691683074.7125602-UTR-L-elsbetiae_contig1787:17211..173791691683074.7125602-UTR-L-elsbetiae_contig1787:17211..17379Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1787 17212..17379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.560394-CDS-L-elsbetiae_contig1787:13338..135121622815744.560394-CDS-L-elsbetiae_contig1787:13338..13512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 13339..13512 -
1691683074.6323926-CDS-L-elsbetiae_contig1787:13338..135121691683074.6323926-CDS-L-elsbetiae_contig1787:13338..13512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 13339..13512 -
1622815744.5712333-CDS-L-elsbetiae_contig1787:14208..144931622815744.5712333-CDS-L-elsbetiae_contig1787:14208..14493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 14209..14493 -
1691683074.6487918-CDS-L-elsbetiae_contig1787:14208..144931691683074.6487918-CDS-L-elsbetiae_contig1787:14208..14493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 14209..14493 -
1622815744.5822864-CDS-L-elsbetiae_contig1787:14839..149201622815744.5822864-CDS-L-elsbetiae_contig1787:14839..14920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 14840..14920 -
1691683074.6604145-CDS-L-elsbetiae_contig1787:14839..149201691683074.6604145-CDS-L-elsbetiae_contig1787:14839..14920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 14840..14920 -
1622815744.5925732-CDS-L-elsbetiae_contig1787:15459..155521622815744.5925732-CDS-L-elsbetiae_contig1787:15459..15552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 15460..15552 -
1691683074.6709876-CDS-L-elsbetiae_contig1787:15459..155521691683074.6709876-CDS-L-elsbetiae_contig1787:15459..15552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 15460..15552 -
1622815744.60315-CDS-L-elsbetiae_contig1787:16160..162741622815744.60315-CDS-L-elsbetiae_contig1787:16160..16274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 16161..16274 -
1691683074.6808107-CDS-L-elsbetiae_contig1787:16160..162741691683074.6808107-CDS-L-elsbetiae_contig1787:16160..16274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 16161..16274 -
1622815744.6134305-CDS-L-elsbetiae_contig1787:16662..172111622815744.6134305-CDS-L-elsbetiae_contig1787:16662..17211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 16663..17211 -
1691683074.6940458-CDS-L-elsbetiae_contig1787:16662..172111691683074.6940458-CDS-L-elsbetiae_contig1787:16662..17211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 16663..17211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1787.5094.1

>prot_L-elsbetiae_contig1787.5094.1 ID=prot_L-elsbetiae_contig1787.5094.1|Name=mRNA_L-elsbetiae_contig1787.5094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=432bp
MVQVQARLLAFGLRSPPYRLSSVLGASPTAAGFTAARCCTAETTLLPVTS
TGAARLGSTTSTTSTTSTTSTRRRWKAWWGMNISSGRPGEVEPARKGPLQ
HQRGLFLPAATPPLMMHRPDGMEGSGEEEEDEDEEDDLLSSLAEELVWKG
GDEEGEDDDDDEEEYEEGELEGLDLESLGISMLDDESAEEVQEQLRREWG
AVSVENEQTDYEVDTAELQSKLRQAMEVLGCQSWDVGAVLTTDKEVSRLN
RQYRGMTTSTDILSFPTNDMSSAPGVLPKVPHSRPHRRLALREMQVRFPA
EMDLGDMFISLAYVDRQIKRDREEEAEEEAEEEAAKDAAAAAEGRGRTEE
EEEQQWWDSERGVSGAMSRVYDVQERASMLLVHGLIHLLGYDHETEKDYQ
AMVAVEEEVLQAVFGKGAASAASPSHASISK*
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mRNA from alignment at L-elsbetiae_contig1787:13006..17379-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1787.5094.1 ID=mRNA_L-elsbetiae_contig1787.5094.1|Name=mRNA_L-elsbetiae_contig1787.5094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4374bp|location=Sequence derived from alignment at L-elsbetiae_contig1787:13006..17379- (Laminarionema elsbetiae ELsaHSoW15)
TTCCACCTTTGCGGCAACACTACTGTTGTGTATGCCCTACGCTCCACCGC
GCCCACCGCGCCCGCTGGGTGTGCATCGACGAAACCCCGTTTCTTGCCCC
CCGTCTGAACCACTTAGAAAAAAACGGAGCCCCTGTGTCCCGCGCGGGGC
GCGGGGGGCTGGAGACAGATGGTGCAGGTACAGGCCCGGCTGCTCGCCTT
CGGGCTTCGATCACCCCCGTACCGATTATCCAGTGTATTGGGTGCCAGCC
CCACCGCTGCTGGGTTCACTGCAGCGCGTTGTTGCACCGCTGAAACAACC
CTCCTGCCAGTAACATCAACAGGAGCAGCAAGACTTGGCAGCACCACGAG
CACCACCAGCACCACCAGCACCACCAGCACACGAAGAAGATGGAAGGCGT
GGTGGGGAATGAATATCTCCAGCGGCAGGCCGGGGGAAGTCGAGCCAGCG
CGCAAGGGACCCCTGCAACATCAACGAGGATTGTTCTTGCCTGCTGCAAC
TCCCCCACTCATGATGCACAGACCCGATGGGATGGAAGGCAGTGGAGAAG
AGGAGGAGGACGAGGACGAGGAGGACGACCTTCTTAGTTCACTTGCAGAG
GAGTTAGTCTGGAAAGGGGGCGATGAAGAGGGGGAGGACGACGACGACGA
TGAGGAGGAATACGAAGAAGGAGAGCTGGAGGGATTAGATCTTGAGAGCT
TGGGGATATCAATGCTGGTCAGTAAGGTCCCTCACTCCCACTCCGTGACT
TGTAGCTAGTCTATCTAACATGTATCTATGTAGCAACTTATATTGCGTCC
AGGCCATCTGGATAGACCTCGAGAGCTTGAGGGTATCGATGCTGGTCAGT
CAGTCCCTTTCTCCCGCTGGTCCATTACCTGTGGTAGCAACTTAGATTGC
ACCCGGGCCATCAGGAGACCAGAGACAGACACGGCTTAGATATGTCGATT
TCAAAAGCGCCGACCTGGTGGCCGATCTTCACAACTGCTGTGTCCGTCAA
GATATAACAGAAACGGAGGGAACGTTGACTGCAAAAAGTAAGTCGCAAAT
GGCTAAAATGGCTGTGGTCGGGCCTCTTCTGTCTTGTTTTGCTACCGGGG
GGCAGGATGACGAGAGTGCGGAGGAAGTACAGGAACAGCTGCGGCGTGAG
TGGGGGGCAGTGTCGGTGGAGAACGAACAGACCGACTATGAAGTCGACAC
CGCCGAGTTGCAGAGCAAGGTATCATAAGTACGTCAGGATTGTGTGATCT
TGCTCCAATGATTTACTTTTAAACACCCCTACATCTTTGTAGCAGTGTTG
GTGTTTTCATCGTTTCCCGGTTAACCGTGAAACTCTGATCCTACCCGCCC
GGCAACACCATGCGACGCATGGCTCATGGCTGTTGTCGAGACGGCGAAAG
TGCGCTAAATTTATGTACCAAAGGATATTTTTCCATACACACAGGACATA
TGTACTTGTAGCCTATCGACGACGATCTCGCAGTTCGTTGGTTCCCCCCC
GCCTGCTTCGTTTGGTGCGGCACGCCGCCGTCAGGCGGCCCATTCAGAGC
AGCCCGCTACATATAGGAGTATACGACAGTAGAACGCAGAGCTTGTGACT
GACTGGAAGCAACGTCGCCCTTAAGTGACGAACTGACAAAGCAGCAAGCA
TATAATTATGCCTCGAAACCACGCACGCACCACAGCTTGCGATGTTGCGA
TGTGCAGCGCGACCCCCCCCCCCCCTGTCTGCATACAATACTCGTAGATG
CACATGTTGACCTTTTGCGCGGGAATGCCCCGGCTGCTGCTGCCCGCTGT
GTATTAATCTCTCTCTCTCTCTCTCAGCTGAGGCAAGCGATGGAAGTCCT
CGGCTGCCAGTCCTGGGATGTTGGGGCCGTTCTCACCACGGACAAGGAAG
TGTCTCGACTAAACCGCCAAGTGAGACTCGAGATTGAAAGCGCAGGCGGG
CCTAATGTGGCACCAAAGTACACCAGTAGGATGTTTTGCGTGCCCGGCTC
GCAAGTAACAGCAGTGATTCGGAAACCAGGAAATGAACGGGCGTAGCAGT
CCAGCTGTGCACGCCTCTACTTGCTCGTACAACATGCGTGGTTGGCTCCG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCGCCGCCGCCC
GCGGCGGCCCCCCCTCCCGCCGTCTCCCCCCTTCCTCCCCCCCCCCCCCN
NNNNNNNNNGAAAAAAAGAAAAAAAAGGGGGGGGGAGGCCCCCCTTGCCC
CCCCCCCCTTTCCTCGTCCCACCCGGTGGGGGGGCCCCCCCCCCCCCCCC
CCCCCCCCCCTCTCTATTCCCCCGGAAGGTTGCGCATGCGATGGACACTG
CATTCCACCTTGCTAAACATCCGCCCCCCCTAACTATATCGAGATCTGTG
CCACTGCTGTGTCCCGTTTCGGCTGGCGTTTCGTGTGTGTATCTCCCCGC
CGGTGGCAGTACCGGGGGATGACAACGTCGACCGACATCTTGTCCTTTCC
CACCAACGACATGTCCAGCGCACCCGGGGTACTCCCAAAGGCAAGCCGAA
TGTTTCTTTTCAGCAACAAGATTTACCCGCCCTGAAATCGATTGCGAATT
TCCAGGGAATGGGTTGCGTAGAGAAGAAGCGGTGTTATTTTTCATTTGTA
CGCATGTACGTACGGTACAATTTGAATTTGTCAATATTGTGCACGACAAA
TCTACACACATGACTACTCCTTTACTTCTTTGACTCCACACGTGCTTGAA
ATTTGCCGATGACGTCGCGCTCGGCTTCTCTGCTTTGGTTTTTGTTCATG
ATGCCTCACGGTAGTTAAGCTTTGCCCCTGCGGTGCCAGTGTCGCCTCCT
CTTCGGTGACCAGCCCGTGTTGGCGTTTTTTCGCAGGTGCCGCATTCACG
CCCACACCGCCGCTTGGCTCTCCGTGAAATGCAGGTCAGATTTCCCGCAG
AGATGGACCTCGGAGATATGTTCATCTCCCTGGCGTACGTCGACCGGCAA
ATTAAGAGGGATAGAGAGGAAGAGGCGGAGGAAGAGGCGGAGGAAGAGGC
GGCAAAAGATGCCGCTGCCGCCGCGGAGGGGCGGGGACGAACGGAGGAGG
AAGAGGAGCAACAGTGGTGGGACAGCGAGAGGGGGGTGAGCGGCGCAATG
TCGAGGGTCTACGACGTCCAGGTGTGCAAGCTTTACGTAGTACCTCGCGA
GTGTCCGTGGCATGGTGTGCAAGACGTTTGTTGCTGTTTGTCGGGGGAGG
GCATGTAGTTTTCTGATTTTCGGGGGGAAGACCAATATAGCCTCGACGGC
GCTTCATTCCATTTGGGAAAAGTTGCTTATTTTGGGTGCATCGGCCGCGG
GTGGATTGACGCAAAGTGGTGCCTGCCCCGGTCGATTGATCCCGCCCGAC
CGTGCGACCTGCCCCTGCGCGGGTATGTTCTGTAGGGTGTGCGGCTTTTG
TGGTGTGTTCGCGGCGTTGTGGCATCGCCTAGATTTGCCTTCATTTGCGT
CGTTACGACGGTGGCTAATACCCCGCTTCCAGGCGTTGGAGTTCAACCAG
ATGGCGTGTGTGTTTCTCGTGCGAAAGAGTGCTCCACGGCGCGTCTTTCT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACAAAAAACACAACAA
GTACGTCACCCTCCCCGCCTGCCCGCCCCCCACCAACCGGAGGGCACAGG
ACGCTGGCGGGNNNNNNNNNNGCGGTTCCCCCGGCGGGGGGTTGGGTTTC
CGGCGCGACCCGGGGCCCCGCCGCGCTCCCTTCCCCCCCCCCCCCCCCCC
CCCGCCTTGCAACAAAGAAACTAATTTGTCGCCGTTCCTTCCCTCGGGTG
TCTCCGCCGAAAACAAGGAGCGGGCGTCCATGCTGCTGGTGCATGGCTTG
ATCCATCTGCTGGGCTACGACCACGAGACGGAGAAGGACTACCAGGCCAT
GGTCGCGGTGGAGGAGGAGGTGTTGCAGGCCGTGTTCGGGAAGGGCGCCG
CCAGCGCAGCGTCCCCCAGTCACGCCTCGATCAGCAAGTAGATCCGTAGA
CTGCTGCTGTTGTTGTAAGCGCGCCGTGAAATTGCACTGGAAGACAGCAA
GTACACTACAAAATATCGTAGACGACTGCTGTCAGCGCGCCGTGAATTTG
TACGTTTGTCTTTGCCTTCGCGAGCTTGCGCGATATCGGGAAGGGGCTGC
TGTTGTATGAAGAGAGACCCATGGCGGGGTCGGGGAGATATTTGAAGCGG
AGGGCGAGTTAAAAGAAGGGACATCATTTGCGGCAATACCGACCTTCGGA
TAGCAACATCACTTCCTCGGCGTCGTTGCGCCGGGGGATCTCTTCATTAC
TCTGTATGTGGGTGAAGAAAAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1787:13006..17379-

>mRNA_L-elsbetiae_contig1787.5094.1 ID=mRNA_L-elsbetiae_contig1787.5094.1|Name=mRNA_L-elsbetiae_contig1787.5094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2592bp|location=Sequence derived from alignment at L-elsbetiae_contig1787:13006..17379- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCAGGTACAGGCCCGGCTGCTCGCCTTCGGGCTTCGATCACCCCC
GTACCGATTATCCAGTGTATTGGGTGCCAGCCCCACCGCTGCTGGGTTCA
CTGCAGCGCGTTGTTGCACCGCTGAAACAACCCTCCTGCCAGTAACATCA
ACAGGAGCAGCAAGACTTGGCAGCACCACGAGCACCACCAGCACCACCAG
CACCACCAGCACACGAAGAAGATGGAAGGCGTGGTGGGGAATGAATATCT
CCAGCGGCAGGCCGGGGGAAGTCGAGCCAGCGCGCAAGGGACCCCTGCAA
CATCAACGAGGATTGTTCTTGCCTGCTGCAACTCCCCCACTCATGATGCA
CAGACCCGATGGGATGGAAGGCAGTGGAGAAGAGGAGGAGGACGAGGACG
AGGAGGACGACCTTCTTAGTTCACTTGCAGAGGAGTTAGTCTGGAAAGGG
GGCGATGAAGAGGGGGAGGACGACGACGACGATGAGGAGGAATACGAAGA
AGGAGAGCTGGAGGGATTAGATCTTGAGAGCTTGGGGATATCAATGCTGA
TGGTGCAGGTACAGGCCCGGCTGCTCGCCTTCGGGCTTCGATCACCCCCG
TACCGATTATCCAGTGTATTGGGTGCCAGCCCCACCGCTGCTGGGTTCAC
TGCAGCGCGTTGTTGCACCGCTGAAACAACCCTCCTGCCAGTAACATCAA
CAGGAGCAGCAAGACTTGGCAGCACCACGAGCACCACCAGCACCACCAGC
ACCACCAGCACACGAAGAAGATGGAAGGCGTGGTGGGGAATGAATATCTC
CAGCGGCAGGCCGGGGGAAGTCGAGCCAGCGCGCAAGGGACCCCTGCAAC
ATCAACGAGGATTGTTCTTGCCTGCTGCAACTCCCCCACTCATGATGCAC
AGACCCGATGGGATGGAAGGCAGTGGAGAAGAGGAGGAGGACGAGGACGA
GGAGGACGACCTTCTTAGTTCACTTGCAGAGGAGTTAGTCTGGAAAGGGG
GCGATGAAGAGGGGGAGGACGACGACGACGATGAGGAGGAATACGAAGAA
GGAGAGCTGGAGGGATTAGATCTTGAGAGCTTGGGGATATCAATGCTGGA
TGACGAGAGTGCGGAGGAAGTACAGGAACAGCTGCGGCGTGAGTGGGGGG
CAGTGTCGGTGGAGAACGAACAGACCGACTATGAAGTCGACACCGCCGAG
TTGCAGAGCAAGGATGACGAGAGTGCGGAGGAAGTACAGGAACAGCTGCG
GCGTGAGTGGGGGGCAGTGTCGGTGGAGAACGAACAGACCGACTATGAAG
TCGACACCGCCGAGTTGCAGAGCAAGCTGAGGCAAGCGATGGAAGTCCTC
GGCTGCCAGTCCTGGGATGTTGGGGCCGTTCTCACCACGGACAAGGAAGT
GTCTCGACTAAACCGCCAACTGAGGCAAGCGATGGAAGTCCTCGGCTGCC
AGTCCTGGGATGTTGGGGCCGTTCTCACCACGGACAAGGAAGTGTCTCGA
CTAAACCGCCAATACCGGGGGATGACAACGTCGACCGACATCTTGTCCTT
TCCCACCAACGACATGTCCAGCGCACCCGGGGTACTCCCAAAGTACCGGG
GGATGACAACGTCGACCGACATCTTGTCCTTTCCCACCAACGACATGTCC
AGCGCACCCGGGGTACTCCCAAAGGTGCCGCATTCACGCCCACACCGCCG
CTTGGCTCTCCGTGAAATGCAGGTCAGATTTCCCGCAGAGATGGACCTCG
GAGATATGTTCATCTCCCTGGCGTACGTCGACCGGCAAATTAAGAGGGAT
AGAGAGGAAGAGGCGGAGGAAGAGGCGGAGGAAGAGGCGGCAAAAGATGC
CGCTGCCGCCGCGGAGGGGCGGGGACGAACGGAGGAGGAAGAGGAGCAAC
AGTGGTGGGACAGCGAGAGGGGGGTGAGCGGCGCAATGTCGAGGGTCTAC
GACGTCCAGGTGCCGCATTCACGCCCACACCGCCGCTTGGCTCTCCGTGA
AATGCAGGTCAGATTTCCCGCAGAGATGGACCTCGGAGATATGTTCATCT
CCCTGGCGTACGTCGACCGGCAAATTAAGAGGGATAGAGAGGAAGAGGCG
GAGGAAGAGGCGGAGGAAGAGGCGGCAAAAGATGCCGCTGCCGCCGCGGA
GGGGCGGGGACGAACGGAGGAGGAAGAGGAGCAACAGTGGTGGGACAGCG
AGAGGGGGGTGAGCGGCGCAATGTCGAGGGTCTACGACGTCCAGGAGCGG
GCGTCCATGCTGCTGGTGCATGGCTTGATCCATCTGCTGGGCTACGACCA
CGAGACGGAGAAGGACTACCAGGCCATGGTCGCGGTGGAGGAGGAGGTGT
TGCAGGCCGTGTTCGGGAAGGGCGCCGCCAGCGCAGCGTCCCCCAGTCAC
GCCTCGATCAGCAAGTAGGAGCGGGCGTCCATGCTGCTGGTGCATGGCTT
GATCCATCTGCTGGGCTACGACCACGAGACGGAGAAGGACTACCAGGCCA
TGGTCGCGGTGGAGGAGGAGGTGTTGCAGGCCGTGTTCGGGAAGGGCGCC
GCCAGCGCAGCGTCCCCCAGTCACGCCTCGATCAGCAAGTAG
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