mRNA_L-elsbetiae_contig17850.5088.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17850.5088.1
Unique NamemRNA_L-elsbetiae_contig17850.5088.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17850.5088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17850contigL-elsbetiae_contig17850:2206..2843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size206
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.0283313-CDS-L-elsbetiae_contig17850:2205..22811622815744.0283313-CDS-L-elsbetiae_contig17850:2205..2281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17850 2206..2281 +
1691683074.3181393-CDS-L-elsbetiae_contig17850:2205..22811691683074.3181393-CDS-L-elsbetiae_contig17850:2205..2281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17850 2206..2281 +
1622815744.043439-CDS-L-elsbetiae_contig17850:2715..28431622815744.043439-CDS-L-elsbetiae_contig17850:2715..2843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17850 2716..2843 +
1691683074.3296819-CDS-L-elsbetiae_contig17850:2715..28431691683074.3296819-CDS-L-elsbetiae_contig17850:2715..2843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17850 2716..2843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17850.5088.1prot_L-elsbetiae_contig17850.5088.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17850 2206..2843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17850.5088.1

>prot_L-elsbetiae_contig17850.5088.1 ID=prot_L-elsbetiae_contig17850.5088.1|Name=mRNA_L-elsbetiae_contig17850.5088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
AQRRCELWHRRLGGRRRERDPERRPQRPPHAQQTTEKGISIICALKRPYD
TAPYNMRTEATIQYSTAN
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mRNA from alignment at L-elsbetiae_contig17850:2206..2843+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17850.5088.1 ID=mRNA_L-elsbetiae_contig17850.5088.1|Name=mRNA_L-elsbetiae_contig17850.5088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=638bp|location=Sequence derived from alignment at L-elsbetiae_contig17850:2206..2843+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCAGAGACGCTGTGAGCTGTGGCACCGCCGGCTGGGGGGTCGTCGACG
GGAACGGGATCCCGAGAGGCGTCCCCGCAGCCGGTTGCGAAACCGGACCG
CCGCGCGCGGGGGCAGGCGTTACGCCCCCACCCCAACCCGATTGCAGCGC
GGCCAGAAGGGCCGCGCCCGAATGGCCACCCTGGGCCTTCCACATCCTTT
CCATCTTGGCCCGATCCTTGCTCTTCAGTGCCTCCGCATGCGCAGAACGA
GGGTCCGGGATCCAATCCGTGTAAAGCTGGAGAATCAGAGTGGGCGACCC
GCCCTCCCGGAGGAGGGCGTCCGAACGGGATACCATATTCTCCAATGCCA
TGCGACGCACATCGAGGCCGAGGCGGTAGCAGAGAGTGTGGAGGGTAATG
AGTTGCGGCCGCAAGACGTGGTACGTCGCCGTGTGCCCCGCGTTTCTCAC
GGTGCTCAGGATGTCCGCCATGAGACGCGCCGCCTAGGATCCAGGCGCAA
GGAGAAACAGAACGACCCCCACACGCACAGCAAACGACCGAAAAGGGAAT
CAGTATAATATGCGCACTGAAGCGACCATACGATACAGCACCGTATAATA
TGCGCACTGAAGCGACCATACAATACAGCACAGCAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17850:2206..2843+

>mRNA_L-elsbetiae_contig17850.5088.1 ID=mRNA_L-elsbetiae_contig17850.5088.1|Name=mRNA_L-elsbetiae_contig17850.5088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig17850:2206..2843+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCAGAGACGCTGTGAGCTGTGGCACCGCCGGCTGGGGGGTCGTCGACG
GGAACGGGATCCCGAGAGGCGTCCCCGCCCAGAGACGCTGTGAGCTGTGG
CACCGCCGGCTGGGGGGTCGTCGACGGGAACGGGATCCCGAGAGGCGTCC
CCAACGACCCCCACACGCACAGCAAACGACCGAAAAGGGAATCAGTATAA
TATGCGCACTGAAGCGACCATACGATACAGCACCGTATAATATGCGCACT
GAAGCGACCATACAATACAGCACAGCAAACAACGACCCCCACACGCACAG
CAAACGACCGAAAAGGGAATCAGTATAATATGCGCACTGAAGCGACCATA
CGATACAGCACCGTATAATATGCGCACTGAAGCGACCATACAATACAGCA
CAGCAAAC
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