mRNA_L-elsbetiae_contig17835.5084.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17835.5084.1
Unique NamemRNA_L-elsbetiae_contig17835.5084.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17835.5084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17835contigL-elsbetiae_contig17835:525..1027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size505
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.4882731-UTR-L-elsbetiae_contig17835:524..6971622815743.4882731-UTR-L-elsbetiae_contig17835:524..697Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17835 525..697 +
1691683073.973586-UTR-L-elsbetiae_contig17835:524..6971691683073.973586-UTR-L-elsbetiae_contig17835:524..697Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17835 525..697 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.503953-CDS-L-elsbetiae_contig17835:697..10271622815743.503953-CDS-L-elsbetiae_contig17835:697..1027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17835 698..1027 +
1691683073.983386-CDS-L-elsbetiae_contig17835:697..10271691683073.983386-CDS-L-elsbetiae_contig17835:697..1027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17835 698..1027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17835.5084.1prot_L-elsbetiae_contig17835.5084.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17835 698..1027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17835.5084.1

>prot_L-elsbetiae_contig17835.5084.1 ID=prot_L-elsbetiae_contig17835.5084.1|Name=mRNA_L-elsbetiae_contig17835.5084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MSLGCVLAKQGTSHASPLPWLDVCRRGVAVLALFSHRDGANRYPFVSSVG
IGCMQSEDSGPGPGSFRLFHPLYTGGRQLLSERLARKGGRSKHGGRIEGL
PVSFWASCED
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mRNA from alignment at L-elsbetiae_contig17835:525..1027+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17835.5084.1 ID=mRNA_L-elsbetiae_contig17835.5084.1|Name=mRNA_L-elsbetiae_contig17835.5084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=503bp|location=Sequence derived from alignment at L-elsbetiae_contig17835:525..1027+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTGAGAGGGGGACTATCCTGGTGTCGGTAATATAAATAGTGGCCGTTT
GTTGTGCGGGCGTGTTTTTTTTGTTTGCGTGTGTGCTTGCGATGGCCGCA
CTGATGTGTATTTTTACCTTTTGGTGTAAAGGCCCGACGCGAGAGTTGAT
GGAAGGCATATATATATATATATATGTCTCTTGGTTGTGTCCTTGCCAAG
CAAGGTACCTCTCACGCGTCACCCTTGCCTTGGCTCGACGTTTGCCGTCG
TGGCGTGGCGGTTCTTGCCTTGTTTTCCCATCGGGATGGAGCAAATCGCT
ACCCGTTTGTTTCCTCCGTGGGGATAGGCTGCATGCAGTCCGAGGATAGC
GGTCCGGGTCCTGGTAGTTTTCGGCTTTTTCATCCGCTATATACCGGGGG
CAGGCAGCTTTTATCGGAGAGGTTGGCAAGGAAAGGAGGGAGGTCAAAAC
ACGGAGGGCGAATCGAAGGGTTGCCGGTTTCTTTCTGGGCAAGCTGCGAA
GAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17835:525..1027+

>mRNA_L-elsbetiae_contig17835.5084.1 ID=mRNA_L-elsbetiae_contig17835.5084.1|Name=mRNA_L-elsbetiae_contig17835.5084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig17835:525..1027+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCTTGGTTGTGTCCTTGCCAAGCAAGGTACCTCTCACGCGTCACC
CTTGCCTTGGCTCGACGTTTGCCGTCGTGGCGTGGCGGTTCTTGCCTTGT
TTTCCCATCGGGATGGAGCAAATCGCTACCCGTTTGTTTCCTCCGTGGGG
ATAGGCTGCATGCAGTCCGAGGATAGCGGTCCGGGTCCTGGTAGTTTTCG
GCTTTTTCATCCGCTATATACCGGGGGCAGGCAGCTTTTATCGGAGAGGT
TGGCAAGGAAAGGAGGGAGGTCAAAACACGGAGGGCGAATCGAAGGGTTG
CCGGTTTCTTTCTGGGCAAGCTGCGAAGACATGTCTCTTGGTTGTGTCCT
TGCCAAGCAAGGTACCTCTCACGCGTCACCCTTGCCTTGGCTCGACGTTT
GCCGTCGTGGCGTGGCGGTTCTTGCCTTGTTTTCCCATCGGGATGGAGCA
AATCGCTACCCGTTTGTTTCCTCCGTGGGGATAGGCTGCATGCAGTCCGA
GGATAGCGGTCCGGGTCCTGGTAGTTTTCGGCTTTTTCATCCGCTATATA
CCGGGGGCAGGCAGCTTTTATCGGAGAGGTTGGCAAGGAAAGGAGGGAGG
TCAAAACACGGAGGGCGAATCGAAGGGTTGCCGGTTTCTTTCTGGGCAAG
CTGCGAAGAC
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