mRNA_L-elsbetiae_contig1783.5083.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1783.5083.1
Unique NamemRNA_L-elsbetiae_contig1783.5083.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1783.5083.1 vs. uniprot
Match: A0A6H5KY80_9PHAE (UBA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY80_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 9.640e-107
Identity = 229/313 (73.16%), Postives = 240/313 (76.68%), Query Frame = 2 
Query:  545 CASMGPLLACSLSLYRLRALEPLLGSKKFSAFAAVTSALALPFEATAGVYFGTVRLTPGPISLVFAMLVVYYAIVPPSKPRYFGALGMDFSDKAFTFAVAGMLASCEGWDSAVPAVCGALVGGLYMMDTMSIQALRLPGVVYRWFSRLSRPFMSSARRGGPFSXXXXXXXXXXXXXXXXXXXXPRSAQALLGPGRGRGGGL---FSFFTPAARQGSTRLR--APPSLXXXXXXXXXXXTVTSLMGMGFDRPAVLQALQQTGNDSYAAVNVLVARAGAGSAPGSAGEAVPRGAGAATTAMSPGRGVDSFSEDPH 1468
            C SMGPLLA SLSLYRLRALEPLLGSKKF AFAAVTSALALPFEATAGVYFGTVRLTPGPI LVFA++VVYYAIVPPSKPRYFG LG+DFSDKAFTF VAGMLASCEGWDS VPAVCGALVGGLY+ DTMSIQA+R P VV+R FSRLSR FMS  RRG  F  XXXXXXXXXXXXXXX       AQALL P RG        FSFFTP  RQGSTRLR       XXXXXXXXX   V SLMGMGFDR AV+QALQQTGNDS+ AVN+LV+R G G  P             ATT+ SPGRG    SE PH
Sbjct:   61 CTSMGPLLASSLSLYRLRALEPLLGSKKFGAFAAVTSALALPFEATAGVYFGTVRLTPGPIPLVFALVVVYYAIVPPSKPRYFGVLGLDFSDKAFTFVVAGMLASCEGWDSIVPAVCGALVGGLYLTDTMSIQAVRFPNVVHRCFSRLSRSFMSG-RRGSFFPGXXXXXXXXXXXXXXXP------AQALLDPARGXXXXXXXXFSFFTPV-RQGSTRLRNAXXXXXXXXXXXXXXEEAVASLMGMGFDRAAVVQALQQTGNDSHTAVNMLVSRGG-GRGPXXXXXXXXXXXSGATTSASPGRGSAYLSEAPH 364
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BLAST of mRNA_L-elsbetiae_contig1783.5083.1 vs. uniprot
Match: A0A4D9D6H4_9STRA (UBA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6H4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.160e-16
Identity = 57/159 (35.85%), Postives = 83/159 (52.20%), Query Frame = 2 
Query:  584 LYRLRALEPLLGSKKFSAFAAVTSALALPFE-ATAGVYFGTVR------LTPGPISLVFAMLVVYYAIVPPSKPRYFGALGMDFSDKAFTFAVAGMLASCEGWDSAVPAVCGALVGGLYMMDTMSIQALRLPGVVYRWFSRLSRPFMSSAR-----RGG 1024
            LY  R  E  +GS+KF +F  +++ LA   E A AG   G  R      L+PGP  +V+A+ V++Y  VP   PR     G D SDK+  +AV   L    GW +A+PA+CG   G LY  +   +Q++ LP V+ R  + +  P + + R     RGG
Sbjct:   72 LYTFRHFERQMGSRKFGSFLVLSTLLATSTEMAIAGWLGGKGRIGEGLVLSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSVLLPQVLCRGVASVLEPLLQARRPTTRVRGG 230
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BLAST of mRNA_L-elsbetiae_contig1783.5083.1 vs. uniprot
Match: B8C4J5_THAPS (UBA domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4J5_THAPS)

HSP 1 Score: 85.5 bits (210), Expect = 1.990e-14
Identity = 89/282 (31.56%), Postives = 127/282 (45.04%), Query Frame = 2 
Query:  530 FLSLGCASMGPLLACSLSLYRLRALEPLLGSKKFSAFAAVTSALALPFEATA-GVYFGTVRLTPGPISLVFAMLVVYYAIVPPSKPRYFGALGMDFSDKAFTFAVAGMLASCEGWDSAVPAVCGALVGGLYMMDTMSIQALRLPGVVYRWFSRLSRPFMSSA---------RRGGPFSXXXXXXXXXXXXXXXXXXXXPRSAQALLGPGRGRGGGLFSFFTPAARQGSTRLRAPPSLXXXXXXXXXXXTVTSLMGMGFDRPAVLQALQQTGNDSYAAVNVLV 1345
            F S+G    G L  C L    +R  E  +GS+KF AF   +S L+  FE     ++F T R + GP   + A+L +Y+   P   P++FG LG DFS+K+ T+ +   +    G  +A+P + G + G    M ++S+    LP +VY     L + F+  A         +RGG                        R+ Q     G  RGG   +   PAA         P    XXXXXXX    +  L  MGFDR AV++ALQQ  N+  AA N L+
Sbjct:   67 FASIGELVFGLLALCPL----MRRFEREMGSRKFGAFIIYSSVLSTIFELVFFNIFFDTERYS-GPYPQLGAVLAMYHKFAPRLHPKFFGVLGYDFSEKSLTYGLCAQVILSGGLSTAIPTIFGFISG----MLSVSLSQHELPEIVYTAAGTLGKAFVDDAPAIMMARTVQRGG------------------------RNQQRRASTGA-RGGRDATAGAPAAA-------LPAVQPXXXXXXXPEEAIAMLSSMGFDRDAVIRALQQADNNVEAAANRLL 307
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BLAST of mRNA_L-elsbetiae_contig1783.5083.1 vs. uniprot
Match: A0A150G2K3_GONPE (UBA domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G2K3_GONPE)

HSP 1 Score: 74.7 bits (182), Expect = 2.950e-11
Identity = 77/256 (30.08%), Postives = 105/256 (41.02%), Query Frame = 2 
Query:  584 LYRLRALEPLLGSKKFSAFAAVTSALALPFEATAGVYFGTVRLTP-GPISLVFAMLVVYYAIVPPSKPRYFGALGMDFSDKAFTFAVAGMLASCEGWDSAVPAVCGALVGGLYMMDTMSIQALRLPGVVYRWFSRLSRPFMSSARRGGPFSXXXXXXXXXXXXXXXXXXXXPRSAQALLGPGRGRGG-GLFSFFTPAARQGSTRLRAPPSLXXXXXXXXXXXTVTSLMGMGFDRPAVLQALQQTGNDSYAAVNVLV 1345
            +Y  R LE   GS+KF AFAAV++ LA   +  A    G +   P GP   +FA  V Y+  VPP+       LG   SDK F + +   L    G  S +    G L G  Y  + + ++ LR PG V+R+ +      + S +   P                     X   A A   PG GR G G+    T AA   +T    PP              V  L+ MGF      +ALQ  GND  AA+ +L+
Sbjct:    1 MYYFRILERESGSRKFGAFAAVSTGLAAALQWAATHSGGRLPACPSGPYGFIFACFVQYFFQVPPASKMV--VLGWRLSDKVFLYLLGLQLLLSGGTSSLLAGGAGLLAGLAYRFNLLGVKKLRFPGFVHRFLASTLGTLLGSDQPA-PAPGRTPGVGQLGGAARRAGGSXXXXAVA---PGAGRQGLGVMGGGTGAA---ATAPHLPPP---------SREAVEQLVAMGFAEAEAARALQLAGNDVQAAIGLLL 238
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BLAST of mRNA_L-elsbetiae_contig1783.5083.1 vs. uniprot
Match: A0A1Y2CYG6_9FUNG (UBA domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CYG6_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 1.270e-6
Identity = 75/280 (26.79%), Postives = 121/280 (43.21%), Query Frame = 2 
Query:  506 LSPSLVSRFLSLGCASMGPLLACSLSLYRLRALEPLLGSKKFSAFAAVTSALALPFEATAGVYFGTVRLTPGPISLVFAMLVVYYAIVPPS-KPRYFGALGMDFSDKAFTFAVAGMLASCEGWDSAVPAVCGALVGGLYMMDTMSIQALRLPGVVYRWFSRLSRPFMSSARRGGPFSXXXXXXXXXXXXXXXXXXXXPRSAQALLGPGRGRGGGLFSFFTPAARQGSTRLRAPPSLXXXXXXXXXXXTVTSLMGMGFDRPAVLQALQQTGNDSYAAVNVL 1342
            L+P+L +RF++   +S   +L  SL +Y LR LE   GS K+S+    ++ ++          FG ++   GP   +F  L+V+  +VP + + R    LG+  SDK   + +AG L   +   S  PA+ G + G L+  D +  ++LR+P  V +   ++  P + S  RG                        P +   L G   G GG       P   Q  T  +   ++           +V  L+GMGFDR AV+ AL++ G     A   L
Sbjct:   43 LAPTL-ARFIAFSNSS--EILFSSLLIYSLRLLERQFGSNKYSSLLLTSTIVSSVLCVLVNSLFG-LKSAAGPYGPIFGALIVFSGLVPVTVRVRI---LGIGISDKVVLYILAGQLLWTQFPRSLPPAISGLIGGILWRSDELPFKSLRVPTAVAQLCEKVFMPVLGS--RG------------------------PTAVGLLGGVNAGTGGE-----PPRVAQEYTNQQQENNVVISEE------SVGILVGMGFDRDAVVAALRRNGGSVERAAAAL 278
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BLAST of mRNA_L-elsbetiae_contig1783.5083.1 vs. uniprot
Match: A0A1Q8RY46_9PEZI (DSC E3 ubiquitin ligase complex subunit 2 n=1 Tax=Colletotrichum chlorophyti TaxID=708187 RepID=A0A1Q8RY46_9PEZI)

HSP 1 Score: 59.7 bits (143), Expect = 4.810e-6
Identity = 55/191 (28.80%), Postives = 91/191 (47.64%), Query Frame = 2 
Query:  539 LGCASMGPLLACSLSLYRLRALEPLLGSKKFSAFAAVTSALALPFEATAGVYFGTVRLTP-----------GPISLVFAMLVVYYAIVP----------PSKPRYFGALGMDFSDKAFTFAVAGMLASCEGWDSAVPAVCGALVGGLYMMDTM--SIQALRLPGVVYRWFSRLSRPFMSSARR-----GGP 1027
            L C +   +L  S++LY LR +E + GS+K+++F  V++     F +     F ++ L P           GP  ++FA+L  Y+A+VP           + P     +G+ FSDK++ +A+A  LA  +   S + A+ G +VG  +  D +  S+   RLPG +    S+  R      RR     GGP
Sbjct:   54 LCCTNSSEVLFASMTLYHLRVIEQIWGSRKYASFILVSTL----FTSVIPPVFLSIVLRPLSASLFNYMPAGPTPIIFAILAQYHAVVPHIYRYRVAASAAPPTNDQFIGLTFSDKSYRYALALQLALFQWPGSLLGALIGWVVGHSWRNDVLPGSMTKWRLPGWMVGARSQSRRSEFEGLRRRLEGEGGP 240
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BLAST of mRNA_L-elsbetiae_contig1783.5083.1 vs. uniprot
Match: A0A4U6X2W3_9PEZI (DSC E3 ubiquitin ligase complex subunit 2 n=11 Tax=Colletotrichum TaxID=5455 RepID=A0A4U6X2W3_9PEZI)

HSP 1 Score: 59.3 bits (142), Expect = 6.450e-6
Identity = 54/184 (29.35%), Postives = 89/184 (48.37%), Query Frame = 2 
Query:  539 LGCASMGPLLACSLSLYRLRALEPLLGSKKFSAFAAVTS---ALALPF-------EATAGVYFGTVRLTPGPISLVFAMLVVYYAIVP----------PSKPRYFGALGMDFSDKAFTFAVAGMLASCEGWDSAVPAVCGALVGGLYMMDTMSIQALRLPGVVYRWFSRLSRPFMSSARRGGPF 1030
            L C +   +L  S++LY LR +E + GS+K+++F AV++   A+  P          TAG++     +  GP  ++FA+L  Y+A++P           + P     +G+ FSDK++ +A+A  LA  +   S + A  G +VG  +  D        LPG V +W        + S RR G F
Sbjct:   54 LCCTNSSEVLFASMTLYHLRVIEQIWGSRKYASFVAVSALFTAVVPPVLLSLVLRPLTAGLFN---YMPAGPTPIIFAVLAQYHAVIPHIYRYRVAASSAPPTTDQFVGLTFSDKSYRYALALQLALFQWPGSLLGAAIGWVVGYSWRNDL-------LPGAVTKWRLPGWMLGIRSQRRRGEF 227
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BLAST of mRNA_L-elsbetiae_contig1783.5083.1 vs. uniprot
Match: N4VKI7_COLOR (DSC E3 ubiquitin ligase complex subunit 2 n=4 Tax=Colletotrichum orbiculare species complex TaxID=2707354 RepID=N4VKI7_COLOR)

HSP 1 Score: 59.3 bits (142), Expect = 6.520e-6
Identity = 51/167 (30.54%), Postives = 83/167 (49.70%), Query Frame = 2 
Query:  539 LGCASMGPLLACSLSLYRLRALEPLLGSKKFSAFAAVTSALALPFEATAGVYFGTVRLTP-----------GPISLVFAMLVVYYAIVP----------PSKPRYFGALGMDFSDKAFTFAVAGMLASCEGWDSAVPAVCGALVGGLYMMDTMSIQALRLPGVVYRW 976
            L C +   +L  ++SLY LR +E + GS+K+++F  V SAL   F A     F ++ L P           GP  ++FA+L  Y+A++P           + P     +G+ FSDK++ +A+A  LA  +   S + A+ G +VG  +  D        LPGV+ +W
Sbjct:   54 LCCTNSSEMLFAAMSLYHLRVIEQIWGSRKYASFVLV-SAL---FTAVIPPVFLSIVLRPLTAGLFNYMPAGPTPIIFAILAQYHAVIPHMYRYRVAASSAPPTNDEFVGLTFSDKSYRYALALQLALFQWPGSLLGALVGWVVGYSWRNDF-------LPGVMTKW 209
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BLAST of mRNA_L-elsbetiae_contig1783.5083.1 vs. uniprot
Match: A0A8H6U3Y6_9PEZI (Uba domain-containing protein ucp14 n=4 Tax=Colletotrichum TaxID=5455 RepID=A0A8H6U3Y6_9PEZI)

HSP 1 Score: 58.2 bits (139), Expect = 1.560e-5
Identity = 47/167 (28.14%), Postives = 80/167 (47.90%), Query Frame = 2 
Query:  539 LGCASMGPLLACSLSLYRLRALEPLLGSKKFSAFAAVTSALALPFEATAGVYFGTVRLTP-----------GPISLVFAMLVVYYAIVP----------PSKPRYFGALGMDFSDKAFTFAVAGMLASCEGWDSAVPAVCGALVGGLYMMDTMSIQALRLPGVVYRW 976
            L C +   +L  S++LY LR +E + GS+K+++F  V++     F A     F ++ L P           GP  ++FA+L  Y+A++P           + P     +G+ FSDK++ +A+A  LA  +   S + A  G ++G  +  D        LPG V +W
Sbjct:   54 LCCTNSSEVLFASMTLYHLRVIEQMWGSRKYASFILVSAF----FTAVIPPVFLSIVLRPLTAGLFNYMPAGPTPIIFAILAQYHAVIPHIYRYRVAASAAPPTNDQFVGLTFSDKSYRYALACQLALFQWPGSMLGAAVGWIIGYSWRNDL-------LPGAVTKW 209
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BLAST of mRNA_L-elsbetiae_contig1783.5083.1 vs. uniprot
Match: UPI0019008ED2 (involucrin repeat protein n=1 Tax=Colletotrichum karsti TaxID=1095194 RepID=UPI0019008ED2)

HSP 1 Score: 60.1 bits (144), Expect = 1.620e-5
Identity = 52/167 (31.14%), Postives = 83/167 (49.70%), Query Frame = 2 
Query:  539 LGCASMGPLLACSLSLYRLRALEPLLGSKKFSAFAAVTSALALPFEATAGVYFGTVRLTP-----------GPISLVFAMLVVYYAIVP----------PSKPRYFGALGMDFSDKAFTFAVAGMLASCEGWDSAVPAVCGALVGGLYMMDTMSIQALRLPGVVYRW 976
            L C +   +L  S++LY LR +E + GS+K+++F  V SAL   F A     F ++ L P           GP  ++FA+L  Y+A++P           + P     +G+ FSDK++ +A+A  LA  +   S + AV G +VG  +  D        LPGV+ +W
Sbjct:   54 LCCTNSSEVLFASMTLYHLRVIEQMWGSRKYASFILV-SAL---FTAVIPPVFLSIVLRPLTAGLFNYMPAGPTPIIFAILAQYHAVIPHIYRYRVAASAAPPTNDEFVGLTFSDKSYRYALAIQLALFQWPGSLLGAVVGWVVGYSWRNDL-------LPGVMTKW 209
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1783.5083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KY80_9PHAE9.640e-10773.16UBA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9D6H4_9STRA6.160e-1635.85UBA domain-containing protein n=2 Tax=Monodopsidac... [more]
B8C4J5_THAPS1.990e-1431.56UBA domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A150G2K3_GONPE2.950e-1130.08UBA domain-containing protein n=1 Tax=Gonium pecto... [more]
A0A1Y2CYG6_9FUNG1.270e-626.79UBA domain-containing protein n=1 Tax=Rhizoclosmat... [more]
A0A1Q8RY46_9PEZI4.810e-628.80DSC E3 ubiquitin ligase complex subunit 2 n=1 Tax=... [more]
A0A4U6X2W3_9PEZI6.450e-629.35DSC E3 ubiquitin ligase complex subunit 2 n=11 Tax... [more]
N4VKI7_COLOR6.520e-630.54DSC E3 ubiquitin ligase complex subunit 2 n=4 Tax=... [more]
A0A8H6U3Y6_9PEZI1.560e-528.14Uba domain-containing protein ucp14 n=4 Tax=Collet... [more]
UPI0019008ED21.620e-531.14involucrin repeat protein n=1 Tax=Colletotrichum k... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1783contigL-elsbetiae_contig1783:14715..20274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score363.6
Seed ortholog evalue9.1e-98
Seed eggNOG ortholog2880.D7FMP5
Preferred nameUBAC2
KEGG koko:K01365
KEGG Pathwayko04140,ko04142,ko04145,ko04210,ko04612,ko05205,ko05323,ko05418,map04140,map04142,map04145,map04210,map04612,map05205,map05323,map05418
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0006355,GO:0006357,GO:0006508,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010559,GO:0010604,GO:0010605,GO:0010628,GO:0012505,GO:0016020,GO:0016021,GO:0016485,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023052,GO:0030162,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031399,GO:0031625,GO:0031984,GO:0032182,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032879,GO:0032880,GO:0032933,GO:0032991,GO:0033036,GO:0033157,GO:0033365,GO:0033554,GO:0034613,GO:0035103,GO:0042176,GO:0042177,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044695,GO:0045861,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051223,GO:0051224,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051604,GO:0051641,GO:0051716,GO:0060049,GO:0060255,GO:0060341,GO:0061136,GO:0065007,GO:0070201,GO:0070727,GO:0070861,GO:0070862,GO:0070972,GO:0071501,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090317,GO:0098588,GO:0098791,GO:0098796,GO:1900037,GO:1900039,GO:1901564,GO:1901799,GO:1902494,GO:1902680,GO:1903018,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903508,GO:1903573,GO:1903827,GO:1903828,GO:1904152,GO:1904153,GO:1904292,GO:1904293,GO:1904950,GO:1905897,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.Ubiquitin-associated domain-containing protein
EggNOG OGsKOG4463@1,KOG4463@2759
EC3.4.22.15
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00537,ko01000,ko01002,ko03110
Ec32 ortholog descriptionUbiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote
Ec32 orthologEc-23_001100.1
Exons6
Model size2202
Cds size933
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1783.5083.1prot_L-elsbetiae_contig1783.5083.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1783 15431..19721 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.3570802-UTR-L-elsbetiae_contig1783:14714..154301622815743.3570802-UTR-L-elsbetiae_contig1783:14714..15430Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1783 14715..15430 -
1691683073.8891633-UTR-L-elsbetiae_contig1783:14714..154301691683073.8891633-UTR-L-elsbetiae_contig1783:14714..15430Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1783 14715..15430 -
1622815743.4501498-UTR-L-elsbetiae_contig1783:19721..202741622815743.4501498-UTR-L-elsbetiae_contig1783:19721..20274Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1783 19722..20274 -
1691683073.9637153-UTR-L-elsbetiae_contig1783:19721..202741691683073.9637153-UTR-L-elsbetiae_contig1783:19721..20274Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1783 19722..20274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.3684726-CDS-L-elsbetiae_contig1783:15430..156551622815743.3684726-CDS-L-elsbetiae_contig1783:15430..15655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1783 15431..15655 -
1691683073.901138-CDS-L-elsbetiae_contig1783:15430..156551691683073.901138-CDS-L-elsbetiae_contig1783:15430..15655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1783 15431..15655 -
1622815743.3790267-CDS-L-elsbetiae_contig1783:15853..159371622815743.3790267-CDS-L-elsbetiae_contig1783:15853..15937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1783 15854..15937 -
1691683073.910814-CDS-L-elsbetiae_contig1783:15853..159371691683073.910814-CDS-L-elsbetiae_contig1783:15853..15937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1783 15854..15937 -
1622815743.391441-CDS-L-elsbetiae_contig1783:16890..170851622815743.391441-CDS-L-elsbetiae_contig1783:16890..17085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1783 16891..17085 -
1691683073.9244835-CDS-L-elsbetiae_contig1783:16890..170851691683073.9244835-CDS-L-elsbetiae_contig1783:16890..17085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1783 16891..17085 -
1622815743.416185-CDS-L-elsbetiae_contig1783:17399..175311622815743.416185-CDS-L-elsbetiae_contig1783:17399..17531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1783 17400..17531 -
1691683073.936113-CDS-L-elsbetiae_contig1783:17399..175311691683073.936113-CDS-L-elsbetiae_contig1783:17399..17531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1783 17400..17531 -
1622815743.4295623-CDS-L-elsbetiae_contig1783:18642..187841622815743.4295623-CDS-L-elsbetiae_contig1783:18642..18784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1783 18643..18784 -
1691683073.9453743-CDS-L-elsbetiae_contig1783:18642..187841691683073.9453743-CDS-L-elsbetiae_contig1783:18642..18784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1783 18643..18784 -
1622815743.4398267-CDS-L-elsbetiae_contig1783:19566..197211622815743.4398267-CDS-L-elsbetiae_contig1783:19566..19721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1783 19567..19721 -
1691683073.9546263-CDS-L-elsbetiae_contig1783:19566..197211691683073.9546263-CDS-L-elsbetiae_contig1783:19566..19721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1783 19567..19721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1783.5083.1

>prot_L-elsbetiae_contig1783.5083.1 ID=prot_L-elsbetiae_contig1783.5083.1|Name=mRNA_L-elsbetiae_contig1783.5083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=311bp
MGPLLACSLSLYRLRALEPLLGSKKFSAFAAVTSALALPFEATAGVYFGT
VRLTPGPISLVFAMLVVYYAIVPPSKPRYFGALGMDFSDKAFTFAVAGML
ASCEGWDSAVPAVCGALVGGLYMMDTMSIQALRLPGVVYRWFSRLSRPFM
SSARRGGPFSGGGGGSSGGAPPARRAVRRPPRSAQALLGPGRGRGGGLFS
FFTPAARQGSTRLRAPPSLPPPPPPPPPEETVTSLMGMGFDRPAVLQALQ
QTGNDSYAAVNVLVARAGAGSAPGSAGEAVPRGAGAATTAMSPGRGVDSF
SEDPHHRHAN*
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mRNA from alignment at L-elsbetiae_contig1783:14715..20274-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1783.5083.1 ID=mRNA_L-elsbetiae_contig1783.5083.1|Name=mRNA_L-elsbetiae_contig1783.5083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5560bp|location=Sequence derived from alignment at L-elsbetiae_contig1783:14715..20274- (Laminarionema elsbetiae ELsaHSoW15)
GGCGTTGTTGTTGGTGGTAGTGTTGTTGCTGCTGTTGCTGCTGCTGCTGC
TGCTGCTGCTGTGCTGCTGCTGCTGCTGTCTGCTGCGGTTGCTGTTGTGC
TGCTGCTGCTGCACGTGTGAGACGGCAAGTATATCCCTTGAACAGCAGCA
GTGGCAGTTATATTTGGGCTATTCTCTGGTTCCCGCAAGTTCGCGCGACG
GGAAGCGCTTTCACGACCTTCAAGCACCTTACCGGTCCACTGCACAGCCC
TCAACGCTCTTTTTTCAGACGCATCTATCTACTTCTCTTTTACGAGAAGC
TCCTTCTCTCACCGCGTCGGGAACGAGTACCGAGAGGTCATCGCGTGCAA
GCACTGAGAGGTCACCGCGCGCGGGGGGGTGACTTTATCTCGTTCAATCT
GCGGGCCAGTTAGTTTTTGTGCCTGACCGCCGCGTTTCAAACCCAACCCC
TTTCAAATGTTGTTCGTTTGTCCGTCCCCCTCACTTGTCCGTCCCCCTCA
CTTGTCTGTCCCCCTCACTTGTCTCTCGCTTTCTCTCTCTGGGTTGTGCA
AGCATGGGGCCGTTACTGGCGTGTTCCCTGTCGCTGTACCGCCTCCGTGC
GCTGGAACCCCTTCTCGGCTCGAAGAAGTTCTCGGCGTTCGCAGCCGTGA
CCTCGGCTCTCGCGCTTCCTTTCGAGGCCACCGCGGGAGTGTACTTCGGG
ACTGTCAGGTACGAGTTAGGACTGTTGCCGCGTGAAGGAGAGAGAGGTTC
GAAACGAGACTCTGAAGCTTGAGGGTGGGCTCGGAGAGGTGTCGATTCTC
GAGAACACGTTTGGCGTTTTTTTTTTGTGCTATGCGGGCTTTGGTGCTGA
TAGGGGGATGGGAACGGAGGAGCATGCAGTGGGGCTCGAGGTGCAGCCTC
TGTGTAATCTCCAGGTGATGTTGTCAAGGGGGCTCGGCGAATGGACACAA
GGTAGATCGATGTTGTCCGCTCGGAGTTGGTGGGACAAGCTTTCAGAGGT
TGCTGAAGAAGATTCATGCAGATTGTAGGGGGGGTGTCACGGCTGCAACA
TGTGATACATATGTCGTGCTAATTTACGGCGGGACTGTTGTCACGGGACT
GTTATTATGGTTGAGGAGGTTCGGAGCACTTGGCTTTTGCGAGAGTAAAG
CAGCCGCAGCCCCTCCATCGAGCCCGAGCTTGTCCGAACCGCGTCGTTGA
GAGTTGATACGATGACGATTGCAAACCCAACATGACTGTCTTTGCATTCC
CTGCGGAGATAGATGCTTCAAGGTACATAGAGCCGCCGTTCGCGACTACT
GGCAGAAACAGCAGTAGTGCTGGCTGGCGCACATGATCAATAGTATGTAT
GTACGACGCGGAAGACAGATCTTTCTCAGTGATTATCAGTGGTTATAGGT
TACCTCCCTCCCCCGGCAACCCAAAAATACCATCCTCCGCCCCCCCCCCG
CCCCTCTTCCCTGGAACACTTGGCGTCGGCATCGCTGCAGGCTTACGCCA
GGGCCCATCTCGCTCGTGTTCGCAATGCTGGTGGTTTACTACGCCATCGT
GCCCCCGTCTAAGCCGCGCTACTTCGGGGCGCTGGGCATGGACTTTTCCG
ACAAGGCGTTCACGTTCGCGGTGGCGGGAATGGTGAGAGACGCCGGGGGC
GCCGTTTTTTATTTTATTTTATTTTTCGCCCACCATTGGGATATTTGTCG
TCCGCCCCGCCCCACCGGCCCCCTTCCTCCACTACGACTAGCTAGACAAC
CCAACCGTATATGCGCCAATGGCTCTAGGTTGTTACGAGCCTATGGGCTC
CAAGTAAGTCAAAGGGGTGTTCTACATAGACGCCCGCGATTTGCGGAGGT
GTGGGCGTGGCGAGGACGCCCGCGTCTCGAGTGCTTCAGGGCAGGGTTGT
TGTGAAGCCGCACGGAGTGGTCAGCTTTTTTCAGTGTACGCAGGCTTTTC
GGATCGAGAGCCAGCGTTGCGCGTTTTAGCGGCGGCGGTAGGGGGCGAGG
AATACCGGCAATATTTGTGGGAGCTTTTCATTCAATGAACCCCCCTCGTC
GCGGAAGGCTTCCTCACCCCTCCGCCGAACGCCGTCCCTGCCGATGCATC
CAAGCCTTCCTTGTCGTATTGGGTTCGTTTCCGGCTTTTGGGGATAATGA
GCGCGTCCCGTTGTCTCGCTCATACGGGTGGTGGTACGCCTTGCCGCCTA
TCTCCTGACTGTAACTTCCCCCCCATCCCTCTGCAAAGTAGCCAGTTTCG
ATAACTTGGCTACATACCAGAGTAATCATCGTGCGAACCCCCCCCCCCCC
CGCCCGGTTCCATTGGTTTTTACCGCGCCCTAAAGTGCGCCCCCCATGGT
ATCTACCCCCCGTGTGGTGTTTGATTGGACCCCATGTGGGATAGTATTGT
CACACTAAACTGCGCGCTCTTCCCTGGACTAGGTACGTAGGCATGCCCAG
CCGCCTTTGTGCTTTGCATTCGGTGTTCGCCGTTCTTTTTCGCCTTCTCG
GGGTTGACTTTTTCTTGTGAGGCGATTATTAAGGGAGCACGGCCACGGGG
CGCACGGGGGTGCTCTCTGTCCTCGCGCGCGTGCAGACATCACCGCCCCC
CCCTCGTTGCCCCTGAATCACGGAGCCCCTGTCTCTTGGCCCTCGGGACT
TCATGGAACGCCCCCCTGCCCGTGACCCTCTCGCAAATTGTTGTGCTGCT
TGATGGTGGTATCGTCGCCGTTTTTGATGTTTGCAATTGACAGCTGGCGT
CTTGCGAGGGGTGGGACTCGGCGGTCCCCGCCGTGTGCGGAGCGCTGGTG
GGCGGGCTGTACATGATGGACACCATGTCTATCCAGGCCCTGCGGTTGCC
GGGCGTGGTGTACCGGTGGTTCTCGGTGAGTGCAGTTGTTTCAAAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGCCGGTGCGGAAAGAGAGAGAGGGA
GAGAGAGAGAGAGAGAGAGAGAAAGGTTGGGCCGATCTGCGAGAAGTCTG
ACAACCAAACCAATAGAAACCCGTGTGCGCACTGCCATGGCGACGACGAC
GACGACGACGACGATTGTGCTGTGCTTTCACTTTGTTCTCTCCGCGCCAC
ATCTGCCGCCCGCCGTATCTCATTTCTGGCTCCCTCCCCTTTCCTGCTGT
CTACGCGGTGGATCCTATCTCGTTCACTGGCGAGAGAAGAGGTTGAGCCG
GCCGTTCATGTCGTCGGCTCGAAGAGGGGGGCCGTTCTCGGGCGGCGGCG
GCGGCAGCAGCGGCGGCGCCCCCCCCGCTCGCCGCGCCGTACGAAGACCC
CCCCGCTCAGCACAAGCGCTTCTGGGTCCTGGGAGAGGGCGCGGCGGCGG
TCTGTTTTCTTTCTTTACGCCGGCGGCACGACAGGCGAGAAAAATGTAGT
AAGACGGGTGTGTGTGTGTGTGTGTGTGTTTTCGCCGTGCACGCACTCGT
GCGTGCCTCACCTGCTTCGCCGATGAACTACCCACTACTGCCCGTACCTA
TTTTTTTGGCTGACCGCGTACCTACACCGGCAGAAAATACGAGTACTAAA
TATTGGCTGTATTGTTAGCTGTTTGGCCCCTGGTACTGTATCGCCACTTG
GATACAAGGCGATTGGAAATAGAACCCGTGCCACAGGACACAGACAGGGG
AACACCTTCAAGTTTTATTTTATGTTTTGCTACTGAACGCCAGACGGTTA
CGCCCAACGTGTAGAAAAACAGAAAAATTCTTCCCACAGGAGGACTGCTG
CAGACCCACTAAACCCTCCCCAGTAGCCGTCGCAGGTTTGACTGGAATAA
ATCATACTGGGATAAATAAAGTATGGAAACAAACGGCGAATGGGGGGTCG
GTTTGGGGTAGGGGTAGGGGTTAGGGTCGGCGTTAGGGTTACGGAGCCTC
TATTATCTTCTATACTGACAGGAATTATTCGCGAAGGCGGGTCCCCCTCG
CCCACCCCACCCCTGGCTGCGTAAGTCTTCATTATTGTTTTATTATTTTC
TGTTTTTTTTTTTCGGGGTGTGCTACATAAAATAGGGGAATCTTTGCCAC
TCGAAGGCAGCGTTGATTCGTTGTTGAAGAGCTTGTCAAAGACCAGAACT
TGCAATATACCTATAACCCTATCAATCGAAGTGTCTCTTTCAAAATTCGT
TGGCAGGCCCATCCATTCTAAGGCTCGATTGTGTAGTCCACCTTGCTTTT
TATTCGTAATCTACTGTATTTTGTTCTCAAAAGGCGTGCTTGTACCACTT
GTTCTCTTTGCTGCTCTTTTTTCGGCCTTCTTTCTCAAATCGATGTGTTT
TGTGTACCTACCTCCCTTGCGTCGTAACTGTTTTCAGGGGTCGACGCGGT
TGAGAGCGCCGCCTTCGCTGCCACCACCACCACCACCACCACCACCGGAG
GAAACCGTGACATCTCTGATGGTAAGCGGCCGACCTAGGACCGACTTCCT
CCTCTACATCTTCTCTGCCTCCACGGCTTGCGTTTGTTTGCCTTTCTTCG
CTTTCTTCCATGGCGCCACTCATGGCTGTGGAGGGTTCGACCAATCACCA
GAGCCCCTAACCCTTAACCCCACGCCCTACACCCCTACACATAACCAAAA
CCACCTTTCCACGCACCAGGGAATGGGATTCGACAGACCGGCGGTACTCC
AAGCACTGCAGCAGACGGGGAATGATTCCTACGCGGCGGTGAACGTGCTG
GTGGCGAGGGCGGGGGCTGGGTCCGCACCAGGATCTGCCGGCGAAGCTGT
GCCGAGGGGGGCAGGGGCGGCTACGACGGCCATGTCTCCGGGACGGGGGG
TAGATTCCTTCTCCGAAGACCCGCACCACCGCCACGCTAACTAGGGGGGG
TATTGTGTAGTGTGCTGGGGCTCTGGAGTTGGAGGTTGCGCGCACTGACT
ACAGAGCCGCTTTTTGCGTTTGTTCTCGTGTTTTTTTGGCAAATACAACC
AGCGCCGAATTCAGAATCCAGCATTCCGTGTGTTTTAAAGCGATGGCGTT
ATTGCAATCGTTGTGTAAATTTATGGCTGTTCGTGTTCGGCGGGGGTTTG
TCACTTGCAGAGTTGGCGGGCAACGGTGTTAGGTGAGCGACGCACGAGGT
CCGGCGTGTAGATGCACCACGGTGGCTCCCTCAGAGTCTCAGCACGGTGT
TTTTCGGTTACAGCAGATAACGAGAGGTATTGGACTGAATGTCCTGCTGT
GACATTTTTTTTTTATCAAGCACTAGCACTGTATTGATCCTTTCAGGATC
TTTTCTCCCATTTGTCGAGTTGTTGCTGACCTGTGACTACGGAAGTCGTC
CGCCCCGGTCGGGCGACTAGGGGTATTATGAGCCCAAAGAGGCACTGCCA
GGGAGAGATGGAACCGCTTGTTAACCCTCTTAGTACTGAAGCCCGTTTGG
AGAAAAAATTGGTGACCCAAAATTTGCCCACTGTTTTCGATCTAGACTTG
CAATGGTAGTCTTTGGAACCTGTGAAACGGCCTGGGGGCACCCCGCCGAG
GGGTATGAACGCTGTACCTACCCTACTTGCCCTGCACACAGCTCCACAGT
AGTGATGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1783:14715..20274-

>mRNA_L-elsbetiae_contig1783.5083.1 ID=mRNA_L-elsbetiae_contig1783.5083.1|Name=mRNA_L-elsbetiae_contig1783.5083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1866bp|location=Sequence derived from alignment at L-elsbetiae_contig1783:14715..20274- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCCGTTACTGGCGTGTTCCCTGTCGCTGTACCGCCTCCGTGCGCT
GGAACCCCTTCTCGGCTCGAAGAAGTTCTCGGCGTTCGCAGCCGTGACCT
CGGCTCTCGCGCTTCCTTTCGAGGCCACCGCGGGAGTGTACTTCGGGACT
GTCAGATGGGGCCGTTACTGGCGTGTTCCCTGTCGCTGTACCGCCTCCGT
GCGCTGGAACCCCTTCTCGGCTCGAAGAAGTTCTCGGCGTTCGCAGCCGT
GACCTCGGCTCTCGCGCTTCCTTTCGAGGCCACCGCGGGAGTGTACTTCG
GGACTGTCAGGCTTACGCCAGGGCCCATCTCGCTCGTGTTCGCAATGCTG
GTGGTTTACTACGCCATCGTGCCCCCGTCTAAGCCGCGCTACTTCGGGGC
GCTGGGCATGGACTTTTCCGACAAGGCGTTCACGTTCGCGGTGGCGGGAA
TGGCTTACGCCAGGGCCCATCTCGCTCGTGTTCGCAATGCTGGTGGTTTA
CTACGCCATCGTGCCCCCGTCTAAGCCGCGCTACTTCGGGGCGCTGGGCA
TGGACTTTTCCGACAAGGCGTTCACGTTCGCGGTGGCGGGAATGCTGGCG
TCTTGCGAGGGGTGGGACTCGGCGGTCCCCGCCGTGTGCGGAGCGCTGGT
GGGCGGGCTGTACATGATGGACACCATGTCTATCCAGGCCCTGCGGTTGC
CGGGCGTGGTGTACCGGTGGTTCTCGCTGGCGTCTTGCGAGGGGTGGGAC
TCGGCGGTCCCCGCCGTGTGCGGAGCGCTGGTGGGCGGGCTGTACATGAT
GGACACCATGTCTATCCAGGCCCTGCGGTTGCCGGGCGTGGTGTACCGGT
GGTTCTCGAGGTTGAGCCGGCCGTTCATGTCGTCGGCTCGAAGAGGGGGG
CCGTTCTCGGGCGGCGGCGGCGGCAGCAGCGGCGGCGCCCCCCCCGCTCG
CCGCGCCGTACGAAGACCCCCCCGCTCAGCACAAGCGCTTCTGGGTCCTG
GGAGAGGGCGCGGCGGCGGTCTGTTTTCTTTCTTTACGCCGGCGGCACGA
CAGAGGTTGAGCCGGCCGTTCATGTCGTCGGCTCGAAGAGGGGGGCCGTT
CTCGGGCGGCGGCGGCGGCAGCAGCGGCGGCGCCCCCCCCGCTCGCCGCG
CCGTACGAAGACCCCCCCGCTCAGCACAAGCGCTTCTGGGTCCTGGGAGA
GGGCGCGGCGGCGGTCTGTTTTCTTTCTTTACGCCGGCGGCACGACAGGG
GTCGACGCGGTTGAGAGCGCCGCCTTCGCTGCCACCACCACCACCACCAC
CACCACCGGAGGAAACCGTGACATCTCTGATGGGGTCGACGCGGTTGAGA
GCGCCGCCTTCGCTGCCACCACCACCACCACCACCACCACCGGAGGAAAC
CGTGACATCTCTGATGGGAATGGGATTCGACAGACCGGCGGTACTCCAAG
CACTGCAGCAGACGGGGAATGATTCCTACGCGGCGGTGAACGTGCTGGTG
GCGAGGGCGGGGGCTGGGTCCGCACCAGGATCTGCCGGCGAAGCTGTGCC
GAGGGGGGCAGGGGCGGCTACGACGGCCATGTCTCCGGGACGGGGGGTAG
ATTCCTTCTCCGAAGACCCGCACCACCGCCACGCTAACTAGGGAATGGGA
TTCGACAGACCGGCGGTACTCCAAGCACTGCAGCAGACGGGGAATGATTC
CTACGCGGCGGTGAACGTGCTGGTGGCGAGGGCGGGGGCTGGGTCCGCAC
CAGGATCTGCCGGCGAAGCTGTGCCGAGGGGGGCAGGGGCGGCTACGACG
GCCATGTCTCCGGGACGGGGGGTAGATTCCTTCTCCGAAGACCCGCACCA
CCGCCACGCTAACTAG
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