mRNA_L-elsbetiae_contig1777.5051.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1777.5051.1
Unique NamemRNA_L-elsbetiae_contig1777.5051.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1777.5051.1 vs. uniprot
Match: A0A6H5KZ36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ36_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 4.010e-47
Identity = 87/114 (76.32%), Postives = 97/114 (85.09%), Query Frame = 1 
Query:    1 MPSDVEHSRRTLLDAARVEPARRERRRLLLASGGYLAVFILSAFEILYQSLSRRIVNRPEWWFAWIVFGGPAVLSLCMSVSRFLVARSLGAGLSGWSTDSLSRLPPHIARLVGL 342
            MPSDV+HSRRTLLDAARVEP+RRERRRLL+ASG YL VF  SA EILYQSLSRRIV+ PE WFAWIVFG P  LSLCM+VSR+LVARSLG     W+  SL+RLPP+IARLVG+
Sbjct:    1 MPSDVDHSRRTLLDAARVEPSRRERRRLLIASGCYLMVFAFSAVEILYQSLSRRIVDSPERWFAWIVFGCPGFLSLCMAVSRYLVARSLGNRPGRWNMASLARLPPNIARLVGI 114
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1777.5051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZ36_9PHAE4.010e-4776.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1777contigL-elsbetiae_contig1777:3037..8793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons4
Model size366
Cds size366
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1777.5051.1prot_L-elsbetiae_contig1777.5051.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1777 3037..8793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.3197968-CDS-L-elsbetiae_contig1777:3036..31181622815740.3197968-CDS-L-elsbetiae_contig1777:3036..3118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1777 3037..3118 -
1691683071.824763-CDS-L-elsbetiae_contig1777:3036..31181691683071.824763-CDS-L-elsbetiae_contig1777:3036..3118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1777 3037..3118 -
1622815740.3301978-CDS-L-elsbetiae_contig1777:3760..38971622815740.3301978-CDS-L-elsbetiae_contig1777:3760..3897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1777 3761..3897 -
1691683071.8349628-CDS-L-elsbetiae_contig1777:3760..38971691683071.8349628-CDS-L-elsbetiae_contig1777:3760..3897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1777 3761..3897 -
1622815740.34157-CDS-L-elsbetiae_contig1777:4777..48671622815740.34157-CDS-L-elsbetiae_contig1777:4777..4867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1777 4778..4867 -
1691683071.8454518-CDS-L-elsbetiae_contig1777:4777..48671691683071.8454518-CDS-L-elsbetiae_contig1777:4777..4867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1777 4778..4867 -
1622815740.3535411-CDS-L-elsbetiae_contig1777:8736..87931622815740.3535411-CDS-L-elsbetiae_contig1777:8736..8793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1777 8737..8793 -
1691683071.854302-CDS-L-elsbetiae_contig1777:8736..87931691683071.854302-CDS-L-elsbetiae_contig1777:8736..8793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1777 8737..8793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1777.5051.1

>prot_L-elsbetiae_contig1777.5051.1 ID=prot_L-elsbetiae_contig1777.5051.1|Name=mRNA_L-elsbetiae_contig1777.5051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MPSDVEHSRRTLLDAARVEPARRERRRLLLASGGYLAVFILSAFEILYQS
LSRRIVNRPEWWFAWIVFGGPAVLSLCMSVSRFLVARSLGAGLSGWSTDS
LSRLPPHIARLVGLTPPDSSRR
back to top

mRNA from alignment at L-elsbetiae_contig1777:3037..8793-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1777.5051.1 ID=mRNA_L-elsbetiae_contig1777.5051.1|Name=mRNA_L-elsbetiae_contig1777.5051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5757bp|location=Sequence derived from alignment at L-elsbetiae_contig1777:3037..8793- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGTCCGACGTGGAACACAGTCGGCGGACGCTGCTGGATGCTGCTAG
GGTGGAGGTGAGTGAGGCGCTGGCATGTTGCTCTAGTTCCTGCTGCTGCT
GCTGCGTTGGAGAATCTACACCCTCATAGCGCGTACATACTTCCTAGCTT
GTTAACCCTCTTGTGTCCTCTTTTCGTGTGATGGTTGCAGATGCCGTACA
GCTTAGCAGCTGCGCGTGTGTGTGGTTTCGAAAATTGAATTTACCTGGGG
GTTGCCTTCACAGTCCATGTCCAGAGACCAACGGTCGGTCTGTTCCACGC
GTCGAAAATCTAAAACGGGCAGCAGCGCAGCAGCTCCCCGCACGCACGCA
CTTCCCCGTGCCATCAACAAGCTTCGTATTGATGCAGCTGCACTACCCCG
AATGCAATATGTATTTGTTGCACGTTGCACACAACACGGGCGGAGAGCAT
GGCCAACAGGCACCACCGCCGTGCTCACCAACTGCTGGTGTCTTTGGCTA
CAGACTGTGTGTGTGTGTGTGTGTCCTTCCCATTTATTTTGGCGACAGTC
CCCCCAAGTGGAGACAGACTAGTCTACAAAATAGGCAGGTATTTTCAAAT
CCCCATCACTACTACTACTACTACTGCACCTGTGCCCATCCTTCTATTGG
ATGTTGGCTTTTATTCTGAGACTCCGCTGCCTGTGTGTGTATCACGTGCA
TGCGTGTTTCGGATCGGACTAGTCTAAACTTAGGCGCGATAAGATCCTCG
ACAAACGAGCTGTGATGTAAAAATGTAGATGCGTAGTTCGCCTGGTTTTC
TCTCTCTCCATCCCTCCATCTCTCCCTATCTCCCTGTCTCTCTCTCTCTC
TCTAGGGTTAGACACAGCACAGGTACAAAAGAACGAACAAAATATACCAC
TGCGGTTATTACGCAGCCACCAAGAATGGTGCGCTGCTTCTAAAATTTGC
TCGTCCGAGCGCTGGTCAAGCAGGGGTGTATGGGTTGTATTTATCCGTAT
ATTGAATCTTGTTGTCGCGCCACACGCACGTGTGCTCGTTATTGGTGGTA
GGTCACGAACCTTGGCAAGCAGTCTGGTCGGACGGGCCTTTGTGCTCTCG
GCGTATGAAGAAGAAAAAATCTACCCAGTTCTTGTATAGGAGTATTTCGC
TATTTATCCGAAACGTGTGGCAGGCGCCCGAATAAATGGGACAAAACACA
CACGCACACACACACACTATACCCCCTCCATGGCAGAAGCACACGTCTCG
TTGTACAGATATCTAATATGCACCGAAACGTGTAGCACATACATATATAC
ATACACCATACAGAGAAGGTGGAAGACGCCCGAATAAGCGGGACGAAAAA
AAAATACACGCACACAAGCACCGCAGGAGGAAACTTCGACGTAATGTATG
TGTCCCTCATCAAAATATCGTGATGTATTGGAAACTTCGACGTAATCACG
TTGACGAGGGAAAGAGAAAGCTGAACCCTTCTCGCGATAAAACCCAAGGC
AAGAACCGCAGGAGGAAGGTGGGACAAAAAAAAAAAAAAAAAGAAGAAAA
AGCCCCAGGGGTGCCCTCCACGGCCACCCCGGCGGGGGCGGGTGGCCAAA
AACAANNNNNNNNNNCAAAAGAAAACACACAAGAAAAAAGAAAAAAAAAA
AAAAAAAAAAAAAAGAAGAAAAAGCCCCAGTGTTCCCCTCCTGTGTGACC
CCGGTTGATTCTAGTTGTACAGACAAATGCACTGCAAAGTGTAGTACCTC
TAAGTACACCGAGATATGTAGTACACGTCTGCACTTGGGGGGACTGTCGC
CAAAATATATGGGAAGGACACACACACACACGATACCGCCGGGCTCGTAT
GTACCATTTTTTTTTGTTTTATTGTTCTTCCGCGGTGTCGTATGTGCCTT
GTTTTGTGACCACGGGCCTCCAAGGATGTTTTGGACTAGAGAGCTATTGT
GAGAAATAACAACAACAACAACCACAACACTCCACACGACAACAACGAGT
AAACAAACATGCACCAGTTTGTAGGTAAATGTACCCACGTCAGAGGCTGC
GACGGTGGTGTTGGGAAGGTCTAGGTTTCCTCGGCGCACTACTCTTCCGA
CCTTGTATTGTAGCCGAACCCACAATTTCGCCGCCATTTTCGGAGAGGCG
GGCTGTAAAATCGTTGGACCACGTTCAGGGTACGTGAAAACGTTTCTGAC
GTGATTATCACAACCGGCTCTACCTTAAGACACTGCGGCTGCCCGTCAGC
CATGAGCAGTCAGGACTAGAGTCAATGCGGGTATTAAGGACCACCTAAGC
TACCCCCCCCTCTGGTAGCTCGTTCTCTGGCGTCTCGACGATTTATGGCA
ACAATGAGGTATCGAACGATAGCTTATGACACGGACTACATGGCGAAACA
ACAAAAACACAAAAAAAAACATTGGTGGTGACATAGTGCCAGCGTAGTAT
ACGTCATGTTTCCAAGAAAATACGGGATAAACGGACTATGGAGGGTATTA
AGGACCACTTTGGTATCTGTATCTAGTGCACTATAGTTGATATTTTGTTC
GGTACCTAGTGTTGGCGGTTTGTGCAATCCACGCAGTGTGTTCGAGCATG
TAAGAATAGCATCATCAATTTGGAAGATTTTTGGTTGGATACATCTGCAA
TTGTCGGAAGGCAAATAAAATAATAATAATATTAGGTGGTATGTACTAGA
TGGAGATGATGGATGGCAGGATACCGTAGGTGGCACAAGATGTCACACCC
CCTGGACCGAATTTTAGAGCTCCATTACTCCGTAACGAAAAGGGTGCCAG
CACCGAACGGCACATCTTTGGACAGCCCTCGACTATTTAGACCTGTCCAA
CGCCGTCACCCCCTTTCGGCACTGGCACTCACTCTTCTTCTTGCTGGGGA
GGAAGAATCGAATCGAGCTTTGAAACTCTGTCCAGGGGGTGTGGTATCTT
GTGTCACCTACGGTATATCGAAGCCTTGTGCAGCAACACCCGTACACACG
CGTTTGGATCGCAAACCTGTGTAAACACACTATTTACACACAAGGGTGTG
TAATACGGGTTACCGATAGTTGGCGGTACGGTACATGGTACTTCGCATTT
CCCAGGTAGTGTATTGTACGGGTTTTCGAGTGACGGTACTCTGCGCTCCG
TATCTTGTGTGTCGAGGGGAGCGGGGGGCTCCAAACTATTTGTCTTTGCT
CTTTGCCTTTTATCGCTTTGCTCACCCTTCGGGTCCATTTTATTTTCGTA
TACTTATTTTAGGTATAAGTTAGCCTGTGACCACGGGAATTGACCGCATC
TAGTGTTGGAATAGTACGCCCATAGGGAGGTACTGGGTGGAGAGATCGGA
ACGGTTTTTTAACGTGAAGAAACAACGACAGCAACTCTGCATGCTCTGCT
GTGCACCATACAACCCAGGCAACTGCAGCAGTAGCAGCTGTGCAGGGTAT
ACATGTATGTTTTTTTTTTTTCACATTTATTTCCAGTGCTCGATGGGCTC
CCTGTCGCGAGGGCATCTTGCCAGAGTACTGAAGCGTGGTCACACAGAAG
CGTTCCTTTCCCCAAGGCCCCCACTCCCCCCGTCTGCGGTGCTTGCCTGA
GATTTTTGTCGTGAGAAGGGTTCAGCCGTTCCTTTCCCTCGTCGACGGTG
AGGTCGAAGTTGTATGTATTACACATCATACATTCGTCGTAACACATGCA
GTTGTAGAGAGGGCAGCAACTCGACAACCATATTTTCATCGAGAAACACG
CGGAACAAAGCAGCTATTGCGGAACCCCCGGGAATGGGGCACTTTCGTCC
CCTCGCGGTAGCAGCGGTACAATAATTACCGGCACGTAACACGGAAACTC
GATTTGCGGTAATTATCGGCACGTTAACGTGGAACATCCGCCGTATTACA
CATCTTGGCACACAAACAACCCCCAGCCGGCGCGAAGGGAGAGGCGGCGG
CTGCTGCTCGCATCCGGCGGCTACCTGGCGGTCTTCATCTTGAGCGCCTT
CGAGATTCTGTATCAGGTATGTATGTTTTTAAGAGTTACTGTAGCTACAT
AGTTGTGACCACGGGAATCGACCGCGTCAAGTGTTGGGTTATCAGTACGG
TATGCCAATGATGGGCGGAAAAATGTATATATATATCCAGTACCATATAT
ATTATATATATGCATATTTATGTTGTTTTCACATTACAGAGCTAGCTAGT
CTGTGACCACGGGAATCGACCGCGTCAAGTGTTGGATTATTAGTACGGAC
AGATGGAGGTTCTCGACATTATTTGTAGAGAGATTGGAATGTTTTTGTAC
ATAAATACGCTATGTGAAGCCAACAACCGACGTGTACATATTCCAAAAAA
ATACCGGCCCGTGGTCGCACAAGTGCTTGATTCATCAGAAGATCGGAAAA
AGAGAACACACGTACTACACACCATGTACATAATAATATTTTTTCTCATA
CATGTGTGATAGCTTTCTGTGTAGTCCAAAAACATCCATGGGGGCGGGCT
CTTTGGTCACACAAACAGGGCACACTCGACGCCGCTGTTGGGTGTGACGC
CATGTCATATCATGTCATATCATGTCAGTTCATGCCATGCCATGTCATGC
CATGTCAATCATGACCTTTTGGGTGTGACGCCATGTCATATACCATGCCA
TGCCGTGCCGTCATGCCGTCATGTCATGTCAATCACGACATTTTTGGGTG
TGACGCCATGTCACATCATGCCATGTCCATCATGGCCTTTTGGGTGTGAC
GCCATGTCATACCATGCCATGCTGCGCCGTCGTCATGTCAATCACGACCT
TTTGGGTGTGACGCCATGTCACATCATGTCATGTCCATCATGGCCTTTGA
GGGTGACGCCATATCATACCATACTATGCCATGCCATGCCTGTCAGTCAC
TGAGCAGGCGCATCGTGAACCGGCCGGAGTGGTGGTTCGCGTGGATCGTG
TTCGGGGGCCCCGCGGTGCTATCGCTATGTATGTCCGTCTCGCGGTTCCT
GGTCGCGCGGTCACTGGGAGCAGGCCTGTCTGGGTGAGAGATCAAAATAT
GAAAATGTCGACAAGATTGGCTGAGAGTACTCTCGTGCTGCTGCTGCTGT
TGGTGTTGGTGTTGGTGTTGTCTGCTGCTGCTGCTGCTGCTACTGCTGCT
GCTGCAGTTGCAGCTGTTGGTGCTGTTGTTGTTTTTATTGTTGTTGCTGT
TGCTGTTGTTGTTGTTGTTGCTGCTGCTGCTGTTCTTGGCGCTGTGGTAG
CTGTTACTGCAGCAGCAGCTGCTGCTGCTGCTGCTGCAATTGCAGCTGTT
GGTGGTGGTGTTTTTTTTATTATTGCTGTTGTATTGTTGTTGTTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTCTTGGCGCTGTGGTAGC
TGTTACTGCAGCAGCTGTTACTGCAGCAGCAGCTGCTGCTGCTGTTGTTG
TGTTGTTGTTGTTGTTGTTGTTGTTGTGGTTGCTGCTACTGGCACTGCAG
CTGCTGTTGGTGTTGGTGTTGGGTTGACGCTGTGCGTGCCGCTGGCGTGT
CGTTGCCTTTTCCGAGATGGAGAACGTGGATTCCCTCTACTATCCCCCTC
CAAACCGCATTTTACCCTTCCCGAGTACATACCCCCCCCGCCCCCCCCTG
TGCGTTTTCTCTATTTTTTCCTCAGGTGGAGCACGGATTCTCTGTCTCGA
CTGCCGCCCCACATCGCCAGGCTGGTGGGACTGACCCCCCCGGATTCGTC
ACGGCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1777:3037..8793-

>mRNA_L-elsbetiae_contig1777.5051.1 ID=mRNA_L-elsbetiae_contig1777.5051.1|Name=mRNA_L-elsbetiae_contig1777.5051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig1777:3037..8793- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGTCCGACGTGGAACACAGTCGGCGGACGCTGCTGGATGCTGCTAG
GGTGGAGATGCCGTCCGACGTGGAACACAGTCGGCGGACGCTGCTGGATG
CTGCTAGGGTGGAGCCGGCGCGAAGGGAGAGGCGGCGGCTGCTGCTCGCA
TCCGGCGGCTACCTGGCGGTCTTCATCTTGAGCGCCTTCGAGATTCTGTA
TCAGCCGGCGCGAAGGGAGAGGCGGCGGCTGCTGCTCGCATCCGGCGGCT
ACCTGGCGGTCTTCATCTTGAGCGCCTTCGAGATTCTGTATCAGTCACTG
AGCAGGCGCATCGTGAACCGGCCGGAGTGGTGGTTCGCGTGGATCGTGTT
CGGGGGCCCCGCGGTGCTATCGCTATGTATGTCCGTCTCGCGGTTCCTGG
TCGCGCGGTCACTGGGAGCAGGCCTGTCTGGTCACTGAGCAGGCGCATCG
TGAACCGGCCGGAGTGGTGGTTCGCGTGGATCGTGTTCGGGGGCCCCGCG
GTGCTATCGCTATGTATGTCCGTCTCGCGGTTCCTGGTCGCGCGGTCACT
GGGAGCAGGCCTGTCTGGGTGGAGCACGGATTCTCTGTCTCGACTGCCGC
CCCACATCGCCAGGCTGGTGGGACTGACCCCCCCGGATTCGTCACGGCGC
GTGGAGCACGGATTCTCTGTCTCGACTGCCGCCCCACATCGCCAGGCTGG
TGGGACTGACCCCCCCGGATTCGTCACGGCGC
back to top