mRNA_L-elsbetiae_contig177.5012.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig177.5012.1
Unique NamemRNA_L-elsbetiae_contig177.5012.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig177.5012.1 vs. uniprot
Match: B5LWF5_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF5_9PHYC)

HSP 1 Score: 165 bits (418), Expect = 2.700e-46
Identity = 90/229 (39.30%), Postives = 126/229 (55.02%), Query Frame = 1 
Query:    4 KRGVSVIYVQLK-LEDTSCHVCLLVFDGRTKMQHYFDPLGFTTEWLVKLMSRRRPFVEGFRVASVEEDSWHGEDSCMQVVLDETGDPNETGNCGVYAFIVTMLCLRHGIGNPKKMATIYTQVCIDRGRAG-RSTRRLWSFLKALFPLAQNLRNSSRQNRASRKAVLSELIWDRFRTDRCGMYCPSSGKLCERTPCGQDIFCWQHRFEFRNKDAEGPDRRRCSAKQVECK 684
            +RGV+VI + L+ L     H  LLVFDG T+ QH+F+P G+   W+ +  +R+ P VEGFRV+SV ED+W  E   +Q + D  G  N  GNC +Y  +V  +CLR+  GNPK+MA I+ +V      A  R + R     K  F +     N      +    ++     +   T RCG+YCP   + C+R  C +DIFCWQHR   RN  A G +RRRC A Q +C+
Sbjct:  103 RRGVAVIALFLRSLNGDEHHASLLVFDGYTRTQHFFNPWGYRNHWMNEAFARKSPLVEGFRVSSVMEDAWPTEPISLQYLYDNNGIANGGGNCVLYCIVVAAMCLRYQKGNPKEMADIFMEVSTSAATASLRKSIRGLQMRKLYFWVNSLNANVVLDTLSDLPGIIFPAPTNPLDT-RCGVYCPKRQRYCKRRRCPEDIFCWQHRHLIRNNHARGSNRRRCVAPQAKCR 330
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BLAST of mRNA_L-elsbetiae_contig177.5012.1 vs. uniprot
Match: Q6XLT4_9PHYC (FirrV-1-N2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT4_9PHYC)

HSP 1 Score: 139 bits (350), Expect = 3.590e-36
Identity = 80/236 (33.90%), Postives = 129/236 (54.66%), Query Frame = 1 
Query:    1 EKRGVSVIYVQL---KLEDTSCHVCLLVFDGRTKMQHYFDPLGFTTEWLVKLMSR-RRPFVEGFRVASVEEDSWHGEDSCMQVVLDETGDPNETGNCGVYAFIVTMLCLRHGIGNPKKMATIYTQVCIDRGRAGR--STRRLWSFLKALFPLAQNLRNSSRQNRASRKAVLSEL--IWDRFRTDRCGMYCPSSGKLCERTPCGQDIFCWQHRFEFRNKDAEGPDRRRCSAKQVECK 684
            +++GV+++ V     K +    HV LLVFDG T+ QH+F+P GF   W+   M+R     V+GFRVASV+ D+W   +  +Q   D+    + +GNC +   +V  +CLR G G+PK MA    ++  ++ RAGR  + + LWS++  +   A+  +N + ++  + + + S L  + D   +  C +Y P     C R  C  DIFCWQHR+  RN  AEG ++  C     +C+
Sbjct:   99 DRKGVAIVLVYFYFTKEKKRGGHVSLLVFDGYTRTQHFFNPWGFRDHWVSIEMARPENQLVKGFRVASVDTDAWLKPNDSLQWAYDKNSLRDGSGNCVLLCVLVAAMCLRFGRGDPKHMADELLRLDENKTRAGREKTLQELWSWMNEITLEARARKNGTVRSDTALRKIPSLLFPVPDAKDSPSCHIYLPDKKTYCLRKRCVNDIFCWQHRYFTRNSHAEGKNKMSCDTPLTKCR 334
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BLAST of mRNA_L-elsbetiae_contig177.5012.1 vs. uniprot
Match: Q8QNP6_ESV1K (EsV-1-13 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP6_ESV1K)

HSP 1 Score: 89.0 bits (219), Expect = 5.660e-17
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 1 
Query:    4 KRGVSVIYVQLKLEDTSC-HVCLLVFDGRTKMQHYFDPLGFTTEWLVKLMSRRRPFVEGFRVASVEEDSWHGEDSCMQVVLDET--GDPNETGNCGVYAFIVTMLCLRHGIGNPKKMATI----------YTQVCIDRG--RAGRSTRRLWSFL 420
            +RG+SV ++ +     +C H CL++FD RT+ QH+F+P      W     S R   VEGF  A + ED+W      MQ V+D    G P   GNC +Y  +V +LC R GIG PK M  +          Y  V +  G    G     LW++L
Sbjct:  102 RRGISVTFLHVMSTQQNCSHACLILFDARTRKQHFFNPEAHVGCWYNIAFSNRPSLVEGFHTAQLNEDTWPTYQQSMQGVVDNNHYGLP---GNCMLYCTLVGVLCTRFGIGKPKLMGEMIVEALQEIDTYNNVDVHHGINHVGSHMTHLWNWL 252
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig177.5012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
B5LWF5_9PHYC2.700e-4639.30Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XLT4_9PHYC3.590e-3633.90FirrV-1-N2 n=1 Tax=Feldmannia irregularis virus a ... [more]
Q8QNP6_ESV1K5.660e-1735.06EsV-1-13 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig177contigL-elsbetiae_contig177:15429..16112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-13
Ec32 orthologEc-00_006170.1
Exons1
Model size684
Cds size684
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.8892157-CDS-L-elsbetiae_contig177:15428..161121622815737.8892157-CDS-L-elsbetiae_contig177:15428..16112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 15429..16112 -
1691683070.4584358-CDS-L-elsbetiae_contig177:15428..161121691683070.4584358-CDS-L-elsbetiae_contig177:15428..16112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig177 15429..16112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig177.5012.1prot_L-elsbetiae_contig177.5012.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig177 15429..16112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig177.5012.1

>prot_L-elsbetiae_contig177.5012.1 ID=prot_L-elsbetiae_contig177.5012.1|Name=mRNA_L-elsbetiae_contig177.5012.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=228bp
EKRGVSVIYVQLKLEDTSCHVCLLVFDGRTKMQHYFDPLGFTTEWLVKLM
SRRRPFVEGFRVASVEEDSWHGEDSCMQVVLDETGDPNETGNCGVYAFIV
TMLCLRHGIGNPKKMATIYTQVCIDRGRAGRSTRRLWSFLKALFPLAQNL
RNSSRQNRASRKAVLSELIWDRFRTDRCGMYCPSSGKLCERTPCGQDIFC
WQHRFEFRNKDAEGPDRRRCSAKQVECK
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mRNA from alignment at L-elsbetiae_contig177:15429..16112-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig177.5012.1 ID=mRNA_L-elsbetiae_contig177.5012.1|Name=mRNA_L-elsbetiae_contig177.5012.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig177:15429..16112- (Laminarionema elsbetiae ELsaHSoW15)
GAGAAGAGAGGTGTAAGTGTCATTTACGTCCAGTTGAAACTTGAAGACAC
CTCGTGCCATGTTTGTCTTCTAGTGTTCGACGGGAGAACAAAGATGCAAC
ATTACTTCGATCCGTTAGGGTTTACCACAGAATGGTTGGTGAAATTAATG
AGTCGAAGACGACCATTTGTAGAGGGGTTTAGAGTTGCTAGTGTCGAAGA
AGATTCTTGGCATGGTGAAGACAGCTGCATGCAAGTAGTACTAGACGAAA
CAGGTGATCCCAACGAAACAGGGAACTGTGGCGTTTACGCTTTTATCGTG
ACTATGCTCTGTCTAAGGCATGGTATTGGTAACCCCAAAAAGATGGCGAC
GATATACACTCAAGTCTGCATCGATCGTGGCCGTGCGGGTCGTTCAACTA
GACGATTGTGGTCATTCTTAAAAGCATTGTTTCCATTAGCTCAAAACTTG
AGGAATTCTTCTCGTCAAAATAGGGCGAGCAGAAAAGCCGTGCTGTCAGA
GCTGATTTGGGACAGGTTTAGAACAGACCGATGCGGCATGTATTGTCCGT
CTTCGGGTAAATTATGTGAAAGAACCCCTTGTGGGCAAGACATTTTTTGT
TGGCAGCACCGGTTCGAATTTAGAAACAAGGATGCGGAAGGGCCTGACAG
AAGGAGGTGTTCAGCTAAGCAGGTCGAGTGCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig177:15429..16112-

>mRNA_L-elsbetiae_contig177.5012.1 ID=mRNA_L-elsbetiae_contig177.5012.1|Name=mRNA_L-elsbetiae_contig177.5012.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1368bp|location=Sequence derived from alignment at L-elsbetiae_contig177:15429..16112- (Laminarionema elsbetiae ELsaHSoW15)
GAGAAGAGAGGTGTAAGTGTCATTTACGTCCAGTTGAAACTTGAAGACAC
CTCGTGCCATGTTTGTCTTCTAGTGTTCGACGGGAGAACAAAGATGCAAC
ATTACTTCGATCCGTTAGGGTTTACCACAGAATGGTTGGTGAAATTAATG
AGTCGAAGACGACCATTTGTAGAGGGGTTTAGAGTTGCTAGTGTCGAAGA
AGATTCTTGGCATGGTGAAGACAGCTGCATGCAAGTAGTACTAGACGAAA
CAGGTGATCCCAACGAAACAGGGAACTGTGGCGTTTACGCTTTTATCGTG
ACTATGCTCTGTCTAAGGCATGGTATTGGTAACCCCAAAAAGATGGCGAC
GATATACACTCAAGTCTGCATCGATCGTGGCCGTGCGGGTCGTTCAACTA
GACGATTGTGGTCATTCTTAAAAGCATTGTTTCCATTAGCTCAAAACTTG
AGGAATTCTTCTCGTCAAAATAGGGCGAGCAGAAAAGCCGTGCTGTCAGA
GCTGATTTGGGACAGGTTTAGAACAGACCGATGCGGCATGTATTGTCCGT
CTTCGGGTAAATTATGTGAAAGAACCCCTTGTGGGCAAGACATTTTTTGT
TGGCAGCACCGGTTCGAATTTAGAAACAAGGATGCGGAAGGGCCTGACAG
AAGGAGGTGTTCAGCTAAGCAGGTCGAGTGCAAGGAGAAGAGAGGTGTAA
GTGTCATTTACGTCCAGTTGAAACTTGAAGACACCTCGTGCCATGTTTGT
CTTCTAGTGTTCGACGGGAGAACAAAGATGCAACATTACTTCGATCCGTT
AGGGTTTACCACAGAATGGTTGGTGAAATTAATGAGTCGAAGACGACCAT
TTGTAGAGGGGTTTAGAGTTGCTAGTGTCGAAGAAGATTCTTGGCATGGT
GAAGACAGCTGCATGCAAGTAGTACTAGACGAAACAGGTGATCCCAACGA
AACAGGGAACTGTGGCGTTTACGCTTTTATCGTGACTATGCTCTGTCTAA
GGCATGGTATTGGTAACCCCAAAAAGATGGCGACGATATACACTCAAGTC
TGCATCGATCGTGGCCGTGCGGGTCGTTCAACTAGACGATTGTGGTCATT
CTTAAAAGCATTGTTTCCATTAGCTCAAAACTTGAGGAATTCTTCTCGTC
AAAATAGGGCGAGCAGAAAAGCCGTGCTGTCAGAGCTGATTTGGGACAGG
TTTAGAACAGACCGATGCGGCATGTATTGTCCGTCTTCGGGTAAATTATG
TGAAAGAACCCCTTGTGGGCAAGACATTTTTTGTTGGCAGCACCGGTTCG
AATTTAGAAACAAGGATGCGGAAGGGCCTGACAGAAGGAGGTGTTCAGCT
AAGCAGGTCGAGTGCAAG
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