mRNA_L-elsbetiae_contig1769.5002.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1769.5002.1
Unique NamemRNA_L-elsbetiae_contig1769.5002.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1769.5002.1 vs. uniprot
Match: D8LEI6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEI6_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 8.310e-45
Identity = 135/253 (53.36%), Postives = 147/253 (58.10%), Query Frame = 1 
Query:  421 MEKEEEERQTLLKTMSRTERRKERVASGLKATASGRNXXXXXXXXXXXXXXXX-ASLVEDGVLFRPGPTAIRLRTAKQMQLEVARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GSLTVKRRASYGSDGPAALAGRGEGRGVVLEVNRTGGXXXXXXXXXXXXXXXASGEGRPNMIFTPSLVPVGMDSVRARPMTLGGAEGAGVVGSVRWEGEATERA--GDRSFGEERGDG-AEVSRDTRTV 1158
            MEKEEEERQ LLKTMSRTERR  R+AS   ++  G N                 ASLVEDGVLFRPGPTAIRLRTAKQMQL VAR                                       G L VKRRA Y SDG AA AGR  G  +VLEVNRTG XXXXXXXXXXX     +GEGRPNMIFTPSL PVGM+SVR+ PM+LG   G G   SVRW  E  E A   + S GE  G+G ++  RDTRTV
Sbjct:    1 MEKEEEERQALLKTMSRTERRHGRIASFKASSGHGNNSNSPGRARQEQSAAAMTASLVEDGVLFRPGPTAIRLRTAKQMQLAVARRRQGCNGDGGSGNEVDTPDYYLTGGEAQGLHPSSTPTAGGPLVVKRRA-YSSDGTAATAGRAGG--LVLEVNRTGXXXXXXXXXXXXRSVPGAGEGRPNMIFTPSLAPVGMESVRSCPMSLGSG-GLGQTSSVRWAPETMESAVAAEDSLGEGGGEGVSQALRDTRTV 249
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BLAST of mRNA_L-elsbetiae_contig1769.5002.1 vs. uniprot
Match: A0A7S2FTG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FTG8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.830e-14
Identity = 64/167 (38.32%), Postives = 94/167 (56.29%), Query Frame = 1 
Query:    1 MKAADYRIPWGRPSEHLLAVKREIIGQQLHVRRVRDARNRSTIDTESPECAHMPHLITRPKKKKMQEDRQRDIATENYSLMHRLAGIMKEERGDPVQKFA--HLSVEYRESLRRKKLLKLETENRRLARSIRKQKPFYPNRAMEKEEEERQTLLKTMSRTERRKERV 495
            MKA DY +PWGRPSE ++A KRE    +L+ +R+ + +  S ID  +P  A   HL  R KKK++  DRQ  I  EN  L+ ++A I++ + G  V   A   L+    E +RRK+L K+  ENR +A  IR+Q P Y +  M  +        K +SRT +R +R+
Sbjct:    1 MKAVDYCVPWGRPSEDVIARKRERQSARLNKQRLNNIK--SMIDCSAP--AVPKHLANRQKKKQLAVDRQHVIDIENAKLVEKMARILRGQ-GPKVCGDAPFRLTGSKNEPIRRKELEKISNENRAIAARIRQQAPNYDHFKMADDYHVSTGYAKNISRTFKRDQRI 162
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1769.5002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEI6_ECTSI8.310e-4553.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2FTG8_9STRA5.830e-1438.32Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1769contigL-elsbetiae_contig1769:13971..16481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKIAA1430 homologue
Ec32 orthologEc-21_004520.1
Exons4
Model size1161
Cds size1161
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1769.5002.1prot_L-elsbetiae_contig1769.5002.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1769 13971..16481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.4866583-CDS-L-elsbetiae_contig1769:13970..141621622815737.4866583-CDS-L-elsbetiae_contig1769:13970..14162Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1769 13971..14162 +
1691683070.2862368-CDS-L-elsbetiae_contig1769:13970..141621691683070.2862368-CDS-L-elsbetiae_contig1769:13970..14162Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1769 13971..14162 +
1622815737.4986024-CDS-L-elsbetiae_contig1769:14951..151161622815737.4986024-CDS-L-elsbetiae_contig1769:14951..15116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1769 14952..15116 +
1691683070.2974384-CDS-L-elsbetiae_contig1769:14951..151161691683070.2974384-CDS-L-elsbetiae_contig1769:14951..15116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1769 14952..15116 +
1622815737.5095062-CDS-L-elsbetiae_contig1769:15605..159781622815737.5095062-CDS-L-elsbetiae_contig1769:15605..15978Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1769 15606..15978 +
1691683070.3088102-CDS-L-elsbetiae_contig1769:15605..159781691683070.3088102-CDS-L-elsbetiae_contig1769:15605..15978Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1769 15606..15978 +
1622815737.5219488-CDS-L-elsbetiae_contig1769:16050..164811622815737.5219488-CDS-L-elsbetiae_contig1769:16050..16481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1769 16051..16481 +
1691683070.3182452-CDS-L-elsbetiae_contig1769:16050..164811691683070.3182452-CDS-L-elsbetiae_contig1769:16050..16481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1769 16051..16481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1769.5002.1

>prot_L-elsbetiae_contig1769.5002.1 ID=prot_L-elsbetiae_contig1769.5002.1|Name=mRNA_L-elsbetiae_contig1769.5002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=387bp
MKAADYRIPWGRPSEHLLAVKREIIGQQLHVRRVRDARNRSTIDTESPEC
AHMPHLITRPKKKKMQEDRQRDIATENYSLMHRLAGIMKEERGDPVQKFA
HLSVEYRESLRRKKLLKLETENRRLARSIRKQKPFYPNRAMEKEEEERQT
LLKTMSRTERRKERVASGLKATASGRNSNNNQHHHQQQPQQSAASLVEDG
VLFRPGPTAIRLRTAKQMQLEVARRRRGGGGGGEDQQELFSSGRGGPRGL
LSSSSSTAAAGSLTVKRRASYGSDGPAALAGRGEGRGVVLEVNRTGGGGG
WRRSGGGGRRRAASGEGRPNMIFTPSLVPVGMDSVRARPMTLGGAEGAGV
VGSVRWEGEATERAGDRSFGEERGDGAEVSRDTRTV*
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mRNA from alignment at L-elsbetiae_contig1769:13971..16481+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1769.5002.1 ID=mRNA_L-elsbetiae_contig1769.5002.1|Name=mRNA_L-elsbetiae_contig1769.5002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2511bp|location=Sequence derived from alignment at L-elsbetiae_contig1769:13971..16481+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGCTGCCGACTACCGCATTCCATGGGGCCGACCAAGCGAGCACCT
TCTGGCCGTGAAGCGGGAGATCATCGGGCAGCAGCTGCATGTGCGACGCG
TCCGGGACGCTCGGAATCGGAGTACCATTGACACCGAATCCCCGGAGTGC
GCTCACATGCCACACCTTATTACGAGACCAAAGAAGAAGAAGGTGTGTGT
GCCGCGCCTCGTCGGCTGCGCCTCGTCGCCCTTGTCTACAAAGTAGTTTA
CAGCGCAGTAGAGACAGAGAGAGGTAGAGAGGCACTACTACTGCTGTAGG
CACTTACAATTTCTACATATACAGCGTATAGTCGGTACGTAGTAGACTAG
GTAGGCGCTGATTGTTGTCGTACAATAGAGTGGGTGGTATCAAGCAGCAG
ATTACCCCCGCTGGTTGAGGTGTGCTTACAGAGAGTTGCAGATTAACACG
GCGAAACATGAACAAACGACAGCAGTCCAGCTTTCGCAAACATGATAGTC
TGGACTATCGTACATAGTTGTGATGAGATACGTCGTCTTTTGTGTGCCAC
TTTTAAACAAGAGGAAGAACTACATATGTACCGGCGAATACCGTATACGG
GCACCGCATCAGACGGACAATTAGGCTTTCTTGTTAAAGTACCCATGATC
TATCTAGTCTAGATTACGGTACAGATACTGTCTTTCATTCCGCCAGCCCC
ATCCACTGTATGTAGAGTTCACATACAGAGGTTCACCAACAGCGAATATT
CAAAAACAGCTCTAAGTCGTGTACCGGCATTGTGTAAACATACCTTCATG
TCTCTTAGAAACGTACATTTCACTATTTAATTAGACTAGTCTAATAGTGT
AACACTACGTACGATTACAAGTTAGATATGTTTACTATCTAGACTAGATA
CTCTTCTTGTAGAAGTATGTAAACTGAATGAAAAAATATGCTTTGCCACG
GACACACGGCCGCCACCCATCCACTTTATAGATGCAAGAAGATCGACAGC
GTGACATTGCTACCGAGAACTACTCCCTCATGCACCGCCTGGCGGGCATC
ATGAAGGAGGAGCGGGGCGATCCTGTTCAAAAGTTCGCACACCTCTCCGT
TGAGTATCGAGAGAGCTTGCGGAGAAAAAAGCTGCTGAAGCTCGAGGTGA
GCGGCTGCATGGTGCACGACGCACCTTCCCTCCCCGTGTTACTGACAGCA
GAACTTTGTTAGTGTACCTTCTTCAATAGTAAAACGCGTGAGCTGAAAGG
CTAGACTACTCTGAGGTGTAGGACCCAAAACGCACGATGAGTAGAAGCAT
GCGCGTTTAAAGTAATGAAGACTTCCCGAGGCTCTCCGAAGCAATCCAGA
AGTGCCAAAGAGTGTTCCCCGATATGCCGAGCGACATCCATGTACGTAAA
TTAACGAAGCACGTTGTGTTCCAAGTTGCGTTGTGCAATCAGCATTCATT
CGAGAATCCGCATCACAAAAAACAAATACCCGAACTACGTCAAGCGGTGG
CGTTTCCCACGGACGGTGCATGTACCAAACTCTACTCTTCCGGGTGGTGG
GTAACTTACACAATTACGCACGTGCTGTATGTGTGCCTGGCTGCATCTAT
GTGCCGACGGGTTTGGTACGCGACTGAGAGCACAGACAGAAAACAGGAGG
CTTGCGCGCTCGATCAGAAAGCAGAAGCCGTTTTACCCCAACCGGGCGAT
GGAAAAAGAGGAGGAGGAGCGACAGACCCTCCTGAAAACCATGTCTCGCA
CGGAACGCCGCAAGGAAAGAGTCGCCAGCGGCCTCAAGGCCACAGCTTCT
GGCCGCAACAGCAACAACAATCAGCATCATCATCAACAACAACCACAACA
GTCCGCCGCGAGTCTGGTGGAGGACGGCGTTCTGTTCCGTCCGGGCCCGA
CGGCGATAAGACTCCGAACCGCGAAGCAGATGCAGCTGGAAGTCGCGCGG
AGGAGACGCGGCGGCGGCGGCGGCGGCGAAGACCAGCAAGAACTCTTCTC
TTCGGGAAGTGGGGATGAAAACGGAAACTCCGGGGAAGGGGGAGCATATG
GTGGAGGCGGGGGCGGAGGCGGAGGTGGAGGAGGAGGACCCCGAGGGTTG
TTATCGTCGTCGTCGTCGACGGCAGCAGCAGGTTCTCTCACGGTAAAACG
GAGAGCGTCGTACGGCAGCGACGGCCCTGCAGCCTTGGCGGGGCGAGGAG
AAGGACGAGGCGTAGTGCTCGAGGTGAACCGCACTGGCGGCGGTGGTGGT
TGGAGGCGCAGCGGCGGCGGGGGGCGCCGTCGAGCAGCGAGCGGGGAAGG
GCGTCCAAACATGATATTCACACCCTCTCTGGTGCCCGTAGGAATGGACT
CCGTCCGTGCCCGCCCCATGACCCTGGGGGGCGCAGAGGGGGCGGGGGTA
GTAGGCTCGGTGCGGTGGGAAGGAGAGGCAACGGAACGTGCTGGCGACCG
GTCGTTCGGGGAGGAAAGGGGCGATGGCGCGGAAGTTTCGCGCGACACGC
GAACGGTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1769:13971..16481+

>mRNA_L-elsbetiae_contig1769.5002.1 ID=mRNA_L-elsbetiae_contig1769.5002.1|Name=mRNA_L-elsbetiae_contig1769.5002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2322bp|location=Sequence derived from alignment at L-elsbetiae_contig1769:13971..16481+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGCTGCCGACTACCGCATTCCATGGGGCCGACCAAGCGAGCACCT
TCTGGCCGTGAAGCGGGAGATCATCGGGCAGCAGCTGCATGTGCGACGCG
TCCGGGACGCTCGGAATCGGAGTACCATTGACACCGAATCCCCGGAGTGC
GCTCACATGCCACACCTTATTACGAGACCAAAGAAGAAGAAGATGAAAGC
TGCCGACTACCGCATTCCATGGGGCCGACCAAGCGAGCACCTTCTGGCCG
TGAAGCGGGAGATCATCGGGCAGCAGCTGCATGTGCGACGCGTCCGGGAC
GCTCGGAATCGGAGTACCATTGACACCGAATCCCCGGAGTGCGCTCACAT
GCCACACCTTATTACGAGACCAAAGAAGAAGAAGATGCAAGAAGATCGAC
AGCGTGACATTGCTACCGAGAACTACTCCCTCATGCACCGCCTGGCGGGC
ATCATGAAGGAGGAGCGGGGCGATCCTGTTCAAAAGTTCGCACACCTCTC
CGTTGAGTATCGAGAGAGCTTGCGGAGAAAAAAGCTGCTGAAGCTCGAGA
TGCAAGAAGATCGACAGCGTGACATTGCTACCGAGAACTACTCCCTCATG
CACCGCCTGGCGGGCATCATGAAGGAGGAGCGGGGCGATCCTGTTCAAAA
GTTCGCACACCTCTCCGTTGAGTATCGAGAGAGCTTGCGGAGAAAAAAGC
TGCTGAAGCTCGAGACAGAAAACAGGAGGCTTGCGCGCTCGATCAGAAAG
CAGAAGCCGTTTTACCCCAACCGGGCGATGGAAAAAGAGGAGGAGGAGCG
ACAGACCCTCCTGAAAACCATGTCTCGCACGGAACGCCGCAAGGAAAGAG
TCGCCAGCGGCCTCAAGGCCACAGCTTCTGGCCGCAACAGCAACAACAAT
CAGCATCATCATCAACAACAACCACAACAGTCCGCCGCGAGTCTGGTGGA
GGACGGCGTTCTGTTCCGTCCGGGCCCGACGGCGATAAGACTCCGAACCG
CGAAGCAGATGCAGCTGGAAGTCGCGCGGAGGAGACGCGGCGGCGGCGGC
GGCGGCGAAGACCAGCAAGAACTCTTCTCTTCGGGAAACAGAAAACAGGA
GGCTTGCGCGCTCGATCAGAAAGCAGAAGCCGTTTTACCCCAACCGGGCG
ATGGAAAAAGAGGAGGAGGAGCGACAGACCCTCCTGAAAACCATGTCTCG
CACGGAACGCCGCAAGGAAAGAGTCGCCAGCGGCCTCAAGGCCACAGCTT
CTGGCCGCAACAGCAACAACAATCAGCATCATCATCAACAACAACCACAA
CAGTCCGCCGCGAGTCTGGTGGAGGACGGCGTTCTGTTCCGTCCGGGCCC
GACGGCGATAAGACTCCGAACCGCGAAGCAGATGCAGCTGGAAGTCGCGC
GGAGGAGACGCGGCGGCGGCGGCGGCGGCGAAGACCAGCAAGAACTCTTC
TCTTCGGGAAGAGGAGGACCCCGAGGGTTGTTATCGTCGTCGTCGTCGAC
GGCAGCAGCAGGTTCTCTCACGGTAAAACGGAGAGCGTCGTACGGCAGCG
ACGGCCCTGCAGCCTTGGCGGGGCGAGGAGAAGGACGAGGCGTAGTGCTC
GAGGTGAACCGCACTGGCGGCGGTGGTGGTTGGAGGCGCAGCGGCGGCGG
GGGGCGCCGTCGAGCAGCGAGCGGGGAAGGGCGTCCAAACATGATATTCA
CACCCTCTCTGGTGCCCGTAGGAATGGACTCCGTCCGTGCCCGCCCCATG
ACCCTGGGGGGCGCAGAGGGGGCGGGGGTAGTAGGCTCGGTGCGGTGGGA
AGGAGAGGCAACGGAACGTGCTGGCGACCGGTCGTTCGGGGAGGAAAGGG
GCGATGGCGCGGAAGTTTCGCGCGACACGCGAACGGTGTAGGAGGAGGAC
CCCGAGGGTTGTTATCGTCGTCGTCGTCGACGGCAGCAGCAGGTTCTCTC
ACGGTAAAACGGAGAGCGTCGTACGGCAGCGACGGCCCTGCAGCCTTGGC
GGGGCGAGGAGAAGGACGAGGCGTAGTGCTCGAGGTGAACCGCACTGGCG
GCGGTGGTGGTTGGAGGCGCAGCGGCGGCGGGGGGCGCCGTCGAGCAGCG
AGCGGGGAAGGGCGTCCAAACATGATATTCACACCCTCTCTGGTGCCCGT
AGGAATGGACTCCGTCCGTGCCCGCCCCATGACCCTGGGGGGCGCAGAGG
GGGCGGGGGTAGTAGGCTCGGTGCGGTGGGAAGGAGAGGCAACGGAACGT
GCTGGCGACCGGTCGTTCGGGGAGGAAAGGGGCGATGGCGCGGAAGTTTC
GCGCGACACGCGAACGGTGTAG
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