mRNA_L-elsbetiae_contig1768.4997.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1768.4997.1
Unique NamemRNA_L-elsbetiae_contig1768.4997.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1768.4997.1 vs. uniprot
Match: A0A6H5JVV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVV3_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.770e-5
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:  190 GMDKERRPGWCTHGGCNKHPSYGVEGSKTVECCADHKREGMVNVKNKRRRHP 345
            G    +R   C +  CNK PS+GVEG+KTV+ C  H R GMVN+KN+R  +P
Sbjct:  130 GSKHAKRRSTCKNPCCNKTPSFGVEGTKTVQFCYSHARSGMVNLKNRRCENP 181
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1768.4997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVV3_9PHAE2.770e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1768contigL-elsbetiae_contig1768:6806..10560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2260
Cds size1338
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1768.4997.1prot_L-elsbetiae_contig1768.4997.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1768 6998..8899 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.9158792-UTR-L-elsbetiae_contig1768:6805..69971622815736.9158792-UTR-L-elsbetiae_contig1768:6805..6997Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1768 6806..6997 +
1691683069.926368-UTR-L-elsbetiae_contig1768:6805..69971691683069.926368-UTR-L-elsbetiae_contig1768:6805..6997Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1768 6806..6997 +
1622815736.9581215-UTR-L-elsbetiae_contig1768:8899..89631622815736.9581215-UTR-L-elsbetiae_contig1768:8899..8963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1768 8900..8963 +
1691683069.9622123-UTR-L-elsbetiae_contig1768:8899..89631691683069.9622123-UTR-L-elsbetiae_contig1768:8899..8963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1768 8900..8963 +
1622815736.969053-UTR-L-elsbetiae_contig1768:9894..105601622815736.969053-UTR-L-elsbetiae_contig1768:9894..10560Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1768 9895..10560 +
1691683069.972676-UTR-L-elsbetiae_contig1768:9894..105601691683069.972676-UTR-L-elsbetiae_contig1768:9894..10560Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1768 9895..10560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.9353745-CDS-L-elsbetiae_contig1768:6997..82741622815736.9353745-CDS-L-elsbetiae_contig1768:6997..8274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1768 6998..8274 +
1691683069.9365122-CDS-L-elsbetiae_contig1768:6997..82741691683069.9365122-CDS-L-elsbetiae_contig1768:6997..8274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1768 6998..8274 +
1622815736.9453292-CDS-L-elsbetiae_contig1768:8838..88991622815736.9453292-CDS-L-elsbetiae_contig1768:8838..8899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1768 8839..8899 +
1691683069.9492676-CDS-L-elsbetiae_contig1768:8838..88991691683069.9492676-CDS-L-elsbetiae_contig1768:8838..8899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1768 8839..8899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1768.4997.1

>prot_L-elsbetiae_contig1768.4997.1 ID=prot_L-elsbetiae_contig1768.4997.1|Name=mRNA_L-elsbetiae_contig1768.4997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=446bp
MDKERRPGWCTHGGCNKHPSYGVEGSKTVECCADHKREGMVNVKNKRRRH
PVCNIEIPSYGVEGSKTVEFCAGHEKGGMVDVKNKRCGHPGCNKHPLYGV
EGSKTREFCAKHAKEGMVDVARKTCARPGCNKRPSYGVEGSKTREFCAGH
AKEGMVDVSRKTCAHPGCNKRPSYGVGDSKTVEFCADHKKEGMVNVVDKN
CAHPGCNKLPSYGVEGSKTREVCAEHKEEGTVNVIAKRCGHPSCNKHPSY
GVEGSKTVEFCAEHKEEGMVNVVSKRCGHPGCNKRPSYGVEGSKTVEFCA
EHKEEGMVNLVNKRCGHPGCNKRPSYGMEGSKTVEFCAGHANEGMLTNPR
PGRVLGRETSSGQSEGSAINRAVVPVGEERKPKGLALSTTAGETPSASKQ
ANTPAAVKVEGHMMMSALSGTAEAVRRTTGGHKKRRRTEAALTPP*
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mRNA from alignment at L-elsbetiae_contig1768:6806..10560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1768.4997.1 ID=mRNA_L-elsbetiae_contig1768.4997.1|Name=mRNA_L-elsbetiae_contig1768.4997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3755bp|location=Sequence derived from alignment at L-elsbetiae_contig1768:6806..10560+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGTCGGCTGCTTCATGTCATTGTCCACAGCCCTTGCAGCGTGCGTA
TGTGGCCACGTGCTTTAGGTAGTGTAGCGCTACGGCTTCTTGGCTTGCGA
GCGGTGTTTCTTCACGGCTCGGTGCATTGCTGGTGTGTTAGTCACAGCTA
GCTATTGTACTCGAGACAAAGCTGTGCGTGTGTGTGTACGGCATGGACAA
GGAAAGAAGGCCAGGTTGGTGCACCCACGGCGGGTGCAACAAGCACCCAT
CGTACGGCGTGGAAGGCAGCAAGACGGTGGAGTGCTGCGCTGACCATAAG
AGAGAGGGCATGGTGAACGTCAAGAACAAAAGGCGTCGCCACCCTGTTTG
CAATATTGAGATTCCGTCGTACGGCGTGGAAGGTAGCAAGACGGTGGAGT
TCTGCGCTGGACATGAGAAGGGGGGCATGGTTGATGTCAAGAACAAAAGG
TGCGGTCATCCTGGGTGCAACAAGCACCCGTTGTACGGCGTGGAAGGCAG
CAAGACGAGGGAGTTCTGCGCTAAACACGCCAAGGAGGGCATGGTGGATG
TCGCCCGCAAAACCTGTGCCCGCCCTGGTTGCAACAAGCGCCCGTCATAC
GGCGTGGAAGGCAGCAAGACGAGGGAGTTCTGCGCTGGACACGCCAAGGA
GGGCATGGTGGATGTCTCCCGCAAAACCTGTGCCCACCCTGGTTGCAACA
AGCGCCCGTCATACGGCGTGGGAGACAGCAAGACGGTGGAGTTCTGCGCT
GATCATAAGAAGGAGGGCATGGTTAACGTCGTCGACAAGAACTGTGCCCA
CCCTGGTTGCAACAAGCTCCCGTCATACGGCGTGGAAGGCAGCAAGACGA
GGGAGGTCTGCGCTGAACACAAGGAGGAGGGCACGGTTAACGTCATCGCC
AAGAGGTGCGGCCATCCTAGTTGCAACAAGCACCCGTCATACGGCGTGGA
AGGCAGCAAGACGGTGGAGTTCTGCGCTGAACACAAGGAGGAGGGAATGG
TGAATGTCGTAAGCAAGAGATGTGGCCACCCTGGGTGCAACAAGCGCCCG
TCATACGGCGTGGAAGGCAGCAAGACGGTGGAATTCTGCGCTGAACACAA
GGAGGAGGGAATGGTGAATCTCGTAAACAAGAGATGCGGCCACCCTGGGT
GCAACAAGCGCCCGTCATACGGCATGGAAGGTAGCAAGACGGTGGAATTC
TGCGCTGGACACGCCAACGAGGGAATGCTGACCAACCCGCGGCCGGGTCG
AGTTTTGGGGAGAGAGACCAGCAGTGGCCAAAGTGAAGGTTCAGCTATAA
ATCGCGCCGTGGTTCCTGTTGGAGAGGAAAGAAAGCCCAAGGGCCTCGCC
CTTTCTACGACGGCAGGGGAGACGCCGTCGGCGAGCAAGCAGGCCAACAC
TCCTGCTGCAGTGAAGGTGGAGGGGCACATGATGATGTCCGCCTTGTCGG
GCACCGCGGAAGCTGTAAGGTAAACTACGTTGAAAATATCAGGTGTGGTT
TGCGCGAACTTTCGAGTTGTCCTTTTGGACGTTGTTCCAGTTTACTGTGG
TCTTGGGCATGTAGGTGAGGGAATCCGGTGGGAAAGATTTGTATTTTGTT
TGCCGACCTCGCTTCCACGAGTAAGTGTGTACCGCTGTGTGTGAATGCTG
CTGATGTAAGACATGTCAAGATGCAGCGGTAGACCCAAAGTAACGCTGGG
GTGTCGTGTATTTATGGGACGGACGTGTCGATGGCATGTGTTTCAGTTTA
CCGTCATCGTGTCGTGTTTTGGGGGGGAAACTACCGAGGAGCCTGCTGCG
TGATGATTCGGCTACATGACAGCGTCGTAGCACGAGCTGTTGTACGCTTC
CTAACTCTCCTTACCTCATGGCAAGGCCTTGCCAGCGGTGGTTCTCCTCA
CTTTGCTTCCTACTTCATTCAGTGTTCCTGCCTCTTGAGTGCCTGGTTTG
GCTGAGCTACGGCAACAATGCTTCCTGCTTACCTCGTTTTTATTTTCTTC
GTGCGCCGTCCTTCTCATTTTGTGCTCGGTCAGACGAACCACTGGCGGAC
ACAAGAAGCGACGCCGGACCGAAGCAGCGCTGACACCCCCCTAGTGTCTG
CACTTGGCGCTGGATCGCGGGAGGTACAGGGCGGCGGTGTTCGTTGGAGT
GTACAGAGGTAATTATATTGTGAAAATATTTGTTTTTGGTGTCCTCGCTT
CTCCTGCTGCCGTTTGTCTCTAAAGACACGTGTTCCTACCCCTCCACCAC
CACGCTCTCGAAAGAGATGCACCGACCTGGTGACACGCACGGGGTGGGGT
CGGCTTTGGGTTAGTACCAGCGCTGTTACCGACACCTCTGCATTGCGTGA
GCTAGGCAACAAGGTTCCCGCTTTTTTGCGACCACGTTGTGATTTTATTT
AGCGCCTAAATTAGCATACGAGACCGGTGATCGAGTTCGATCATGTTGTG
CGGGGCGAGTAATCTCAACTCGGCGCAAGGGAGATGGTCGCGCGAGGCAG
TTTTGAGATGCTGAGGCATCCACGGGGCAGTGTGACCCACGGCTGTCTCC
GGAAGTGGCGACACCAGACAATGGATCAACCCCCTTGACGCAGCGATCCA
TGTGCAAGATGTGCTCTTTACTTTTTTACGGTCTGGGCCGAACACTCTCA
GCAGGATGCAGAGCCCATCCTTCATGCGACTCGCCGAACACATCACGCGG
AGCTCCACGCTTAGTGAATGCGTTATTGAGCCTCGTTCGGCGAAAACCGG
GCGCGGTCCGTCCCTTAAGGTTTGTATGGGGATGCGAAATCTATGGTCTA
CAAAACGACCACGGCGTGCGCAGTCACTGAGTACTCCCGCCAGGATGTGT
CCTTCCGCGGCGCTTACCCACGTTTGTTCCCATACCGAAACCCAAGGGCG
CGCCCGCAAGTAAGTGTGGTCCACTTTGAGATTCTGCTGATTTGGCCCTG
CCCCCCCCACGCACGGTGGGCACAAAGCACTGCCGATGGATGATCCGAGC
CATGTATGTTCCTCTCATTCACTCACGTCCGTCCGTCCCTCTGTTTCCCT
CCTCCCTTTGACGCTGCGCCGACCCACCACGAACCACAGCACCGCTGTAG
AGGCAGGGAAAGACGAGCCCGCCGCCTCGGCCTTACGCGGCGAGCATGTG
TGCTGCTAAGACAAGAGGACCTTACGGGACGGAGCGCAAGGGCGTCGTTG
GGTGGGGACAGCGTTGAGGATTGGCGAGCGTAAACCGACGCCAAGCTGGG
AGATGGAGACAGCAGCGGCCGAAACACCAACGCCGTCAACCTGAGCTCTC
TGCCGCCAGACTACTGGGTGACCGTGTTCAACCTGGAAGCGGCAGAGGCC
AGGTACCTCCCGTTAAAGCCCACTAAGGAGTCAGAGGCGCAGACGACCAG
GAGTAGAAGGTGGTGAACAGGAAAGCCGTGGGAAGAAGAGGCACCACTTT
GACGCAGTGATGATGTACCTCAACACGCTGCCCCCTGGGCGTGAACATAA
GCCTGCTGCGCCTGGGTTTGGGGACATACTGAAGTAGATGGTTAAGGTAA
ACGGTTCTCTTGGTTGGGTCTCTTGTCGATTTTTTGCAGTGTTTTGGAAG
TACAACGAACCACCCCGGGTCGAGAATGTGCCTACTAGGTGGAAAGGAGA
GCGTGACCTGAACACCTTGTCGGGCATTTGTTTTTCTTTTCTAGAGCGAG
GGCTGAGACGAACGGTCGTGGGGGTGCCTGGTACGGTGCAATTTTTCCTC
CCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1768:6806..10560+

>mRNA_L-elsbetiae_contig1768.4997.1 ID=mRNA_L-elsbetiae_contig1768.4997.1|Name=mRNA_L-elsbetiae_contig1768.4997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2676bp|location=Sequence derived from alignment at L-elsbetiae_contig1768:6806..10560+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAAGGAAAGAAGGCCAGGTTGGTGCACCCACGGCGGGTGCAACAA
GCACCCATCGTACGGCGTGGAAGGCAGCAAGACGGTGGAGTGCTGCGCTG
ACCATAAGAGAGAGGGCATGGTGAACGTCAAGAACAAAAGGCGTCGCCAC
CCTGTTTGCAATATTGAGATTCCGTCGTACGGCGTGGAAGGTAGCAAGAC
GGTGGAGTTCTGCGCTGGACATGAGAAGGGGGGCATGGTTGATGTCAAGA
ACAAAAGGTGCGGTCATCCTGGGTGCAACAAGCACCCGTTGTACGGCGTG
GAAGGCAGCAAGACGAGGGAGTTCTGCGCTAAACACGCCAAGGAGGGCAT
GGTGGATGTCGCCCGCAAAACCTGTGCCCGCCCTGGTTGCAACAAGCGCC
CGTCATACGGCGTGGAAGGCAGCAAGACGAGGGAGTTCTGCGCTGGACAC
GCCAAGGAGGGCATGGTGGATGTCTCCCGCAAAACCTGTGCCCACCCTGG
TTGCAACAAGCGCCCGTCATACGGCGTGGGAGACAGCAAGACGGTGGAGT
TCTGCGCTGATCATAAGAAGGAGGGCATGGTTAACGTCGTCGACAAGAAC
TGTGCCCACCCTGGTTGCAACAAGCTCCCGTCATACGGCGTGGAAGGCAG
CAAGACGAGGGAGGTCTGCGCTGAACACAAGGAGGAGGGCACGGTTAACG
TCATCGCCAAGAGGTGCGGCCATCCTAGTTGCAACAAGCACCCGTCATAC
GGCGTGGAAGGCAGCAAGACGGTGGAGTTCTGCGCTGAACACAAGGAGGA
GGGAATGGTGAATGTCGTAAGCAAGAGATGTGGCCACCCTGGGTGCAACA
AGCGCCCGTCATACGGCGTGGAAGGCAGCAAGACGGTGGAATTCTGCGCT
GAACACAAGGAGGAGGGAATGGTGAATCTCGTAAACAAGAGATGCGGCCA
CCCTGGGTGCAACAAGCGCCCGTCATACGGCATGGAAGGTAGCAAGACGG
TGGAATTCTGCGCTGGACACGCCAACGAGGGAATGCTGACCAACCCGCGG
CCGGGTCGAGTTTTGGGGAGAGAGACCAGCAGTGGCCAAAGTGAAGGTTC
AGCTATAAATCGCGCCGTGGTTCCTGTTGGAGAGGAAAGAAAGCCCAAGG
GCCTCGCCCTTTCTACGACGGCAGGGGAGACGCCGTCGGCGAGCAAGCAG
GCCAACACTCCTGCTGCAGTGAAGGTGGAGGGGCACATGATGATGTCCGC
CTTGTCGGGCACCGCGGAAGCTGTAAGATGGACAAGGAAAGAAGGCCAGG
TTGGTGCACCCACGGCGGGTGCAACAAGCACCCATCGTACGGCGTGGAAG
GCAGCAAGACGGTGGAGTGCTGCGCTGACCATAAGAGAGAGGGCATGGTG
AACGTCAAGAACAAAAGGCGTCGCCACCCTGTTTGCAATATTGAGATTCC
GTCGTACGGCGTGGAAGGTAGCAAGACGGTGGAGTTCTGCGCTGGACATG
AGAAGGGGGGCATGGTTGATGTCAAGAACAAAAGGTGCGGTCATCCTGGG
TGCAACAAGCACCCGTTGTACGGCGTGGAAGGCAGCAAGACGAGGGAGTT
CTGCGCTAAACACGCCAAGGAGGGCATGGTGGATGTCGCCCGCAAAACCT
GTGCCCGCCCTGGTTGCAACAAGCGCCCGTCATACGGCGTGGAAGGCAGC
AAGACGAGGGAGTTCTGCGCTGGACACGCCAAGGAGGGCATGGTGGATGT
CTCCCGCAAAACCTGTGCCCACCCTGGTTGCAACAAGCGCCCGTCATACG
GCGTGGGAGACAGCAAGACGGTGGAGTTCTGCGCTGATCATAAGAAGGAG
GGCATGGTTAACGTCGTCGACAAGAACTGTGCCCACCCTGGTTGCAACAA
GCTCCCGTCATACGGCGTGGAAGGCAGCAAGACGAGGGAGGTCTGCGCTG
AACACAAGGAGGAGGGCACGGTTAACGTCATCGCCAAGAGGTGCGGCCAT
CCTAGTTGCAACAAGCACCCGTCATACGGCGTGGAAGGCAGCAAGACGGT
GGAGTTCTGCGCTGAACACAAGGAGGAGGGAATGGTGAATGTCGTAAGCA
AGAGATGTGGCCACCCTGGGTGCAACAAGCGCCCGTCATACGGCGTGGAA
GGCAGCAAGACGGTGGAATTCTGCGCTGAACACAAGGAGGAGGGAATGGT
GAATCTCGTAAACAAGAGATGCGGCCACCCTGGGTGCAACAAGCGCCCGT
CATACGGCATGGAAGGTAGCAAGACGGTGGAATTCTGCGCTGGACACGCC
AACGAGGGAATGCTGACCAACCCGCGGCCGGGTCGAGTTTTGGGGAGAGA
GACCAGCAGTGGCCAAAGTGAAGGTTCAGCTATAAATCGCGCCGTGGTTC
CTGTTGGAGAGGAAAGAAAGCCCAAGGGCCTCGCCCTTTCTACGACGGCA
GGGGAGACGCCGTCGGCGAGCAAGCAGGCCAACACTCCTGCTGCAGTGAA
GGTGGAGGGGCACATGATGATGTCCGCCTTGTCGGGCACCGCGGAAGCTG
TAAGACGAACCACTGGCGGACACAAGAAGCGACGCCGGACCGAAGCAGCG
CTGACACCCCCCTAGACGAACCACTGGCGGACACAAGAAGCGACGCCGGA
CCGAAGCAGCGCTGACACCCCCCTAG
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