mRNA_L-elsbetiae_contig17663.4989.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17663.4989.1
Unique NamemRNA_L-elsbetiae_contig17663.4989.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17663.4989.1 vs. uniprot
Match: B5LWN4_9PHYC (Putative ubiquitin-like putative cysteine protease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWN4_9PHYC)

HSP 1 Score: 51.6 bits (122), Expect = 2.910e-5
Identity = 37/112 (33.04%), Postives = 50/112 (44.64%), Query Frame = 1 
Query:    4 VIEVENKVLKCYDSLNYPCGVVTAGLKKWLEDILEDDYYKGRWKDIFPHEWRVMDQTQTGTSDLQRNDRDCGVFTLAFANKISKHEDLGDVAQIAMGGARKKIASQIIEGSL 339
            V++   K + CYDSL+    VV   +K+W   I   D            +W     T+ GTS LQ N  DCGVF    A  +S    L   +Q  M   R++IA  I+ G L
Sbjct:  217 VVDNGKKKVSCYDSLHRRHIVVLRNIKRWAHSIYGTD------------DWT----TEYGTSPLQLNTDDCGVFVCINAALLSNKRKL-KYSQEHMAAFRQRIARSIVNGRL 311
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17663.4989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B5LWN4_9PHYC2.910e-533.04Putative ubiquitin-like putative cysteine protease... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17663contigL-elsbetiae_contig17663:892..1848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size343
Cds size342
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17663.4989.1prot_L-elsbetiae_contig17663.4989.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17663 892..1848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.0461893-CDS-L-elsbetiae_contig17663:891..9151622815736.0461893-CDS-L-elsbetiae_contig17663:891..915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17663 892..915 +
1691683069.3338408-CDS-L-elsbetiae_contig17663:891..9151691683069.3338408-CDS-L-elsbetiae_contig17663:891..915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17663 892..915 +
1622815736.055849-CDS-L-elsbetiae_contig17663:1342..15161622815736.055849-CDS-L-elsbetiae_contig17663:1342..1516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17663 1343..1516 +
1691683069.3479714-CDS-L-elsbetiae_contig17663:1342..15161691683069.3479714-CDS-L-elsbetiae_contig17663:1342..1516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17663 1343..1516 +
1622815736.0679963-CDS-L-elsbetiae_contig17663:1704..18481622815736.0679963-CDS-L-elsbetiae_contig17663:1704..1848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17663 1705..1848 +
1691683069.358098-CDS-L-elsbetiae_contig17663:1704..18481691683069.358098-CDS-L-elsbetiae_contig17663:1704..1848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17663 1705..1848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17663.4989.1

>prot_L-elsbetiae_contig17663.4989.1 ID=prot_L-elsbetiae_contig17663.4989.1|Name=mRNA_L-elsbetiae_contig17663.4989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
FVIEVENKVLKCYDSLNYPCGVVTAGLKKWLEDILEDDYYKGRWKDIFPH
EWRVMDQTQTGTSDLQRNDRDCGVFTLAFANKISKHEDLGDVAQIAMGGA
RKKIASQIIEGSL*
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mRNA from alignment at L-elsbetiae_contig17663:892..1848+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17663.4989.1 ID=mRNA_L-elsbetiae_contig17663.4989.1|Name=mRNA_L-elsbetiae_contig17663.4989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=957bp|location=Sequence derived from alignment at L-elsbetiae_contig17663:892..1848+ (Laminarionema elsbetiae ELsaHSoW15)
TTCGTGATCGAAGTGGAGAACAAGGTGATACTTATTCAGACTACTTTAAC
CCTAACGCCCAATCATCCACTTCTTTTGACAAGGGACGCCCCGTGCACGG
TGTGACGATGTATAGACTAGACAAACTTACGGAAGACTTAACGGGAACCT
TCCTCTAACACTTCCATACGAGAGTACCAACACCTTTTGTGTAGACGTTG
ATGACGTTGGATCAGTATACTAGGCTGCGTTAATGAAGCTGTCGAAGAGT
ACCGAATGTTGGGGTGCTGAGTACAAACAGAGGCACCGCACTCAGGCGAC
GAAGAAAGGCAAGGACGTTTTTACACTGCGTTTTTGGAAACAAGCAACCC
AGGGGTCACGTTTACCGGCTCCCAAATAACAAGATAACCAATGAATTCAA
TCAAGCCACTGAATGCAATCTATTGCTTTCGGGTAATGTGTGCTACGGCA
GGTTTTGAAATGCTATGACAGTTTAAACTACCCTTGCGGTGTGGTCACAG
CGGGGTTGAAGAAATGGCTCGAAGACATACTCGAAGACGACTACTACAAG
GGCCGTTGGAAAGATATTTTTCCCCATGAATGGAGAGTGATGGATCAGAC
GCAGACGGGCACTTCAGATCTACAGGCAAGACCACCCTGCCCCGATACAC
GGTCCCGTGTCCGTTAGTTTGGCCTTTGGGGCTAATTTGACGGCAGACAT
GGACTACGGTCTGTTCGTTCCCTTCGTGCCATCACTAGATACATGTAGTC
ACCACGCGCCCGACCCACTTCCTGTCGATTCGTTGTATCTATTGTTCGTA
AATATCACCCCAGAGGAATGATCGGGACTGCGGAGTGTTTACTCTTGCGT
TCGCAAACAAGATCAGCAAACACGAGGACCTGGGCGATGTCGCACAAATA
GCGATGGGTGGAGCACGGAAGAAGATTGCATCCCAGATTATCGAGGGCAG
CCTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17663:892..1848+

>mRNA_L-elsbetiae_contig17663.4989.1 ID=mRNA_L-elsbetiae_contig17663.4989.1|Name=mRNA_L-elsbetiae_contig17663.4989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig17663:892..1848+ (Laminarionema elsbetiae ELsaHSoW15)
TTCGTGATCGAAGTGGAGAACAAGTTCGTGATCGAAGTGGAGAACAAGGT
TTTGAAATGCTATGACAGTTTAAACTACCCTTGCGGTGTGGTCACAGCGG
GGTTGAAGAAATGGCTCGAAGACATACTCGAAGACGACTACTACAAGGGC
CGTTGGAAAGATATTTTTCCCCATGAATGGAGAGTGATGGATCAGACGCA
GACGGGCACTTCAGATCTACAGGTTTTGAAATGCTATGACAGTTTAAACT
ACCCTTGCGGTGTGGTCACAGCGGGGTTGAAGAAATGGCTCGAAGACATA
CTCGAAGACGACTACTACAAGGGCCGTTGGAAAGATATTTTTCCCCATGA
ATGGAGAGTGATGGATCAGACGCAGACGGGCACTTCAGATCTACAGAGGA
ATGATCGGGACTGCGGAGTGTTTACTCTTGCGTTCGCAAACAAGATCAGC
AAACACGAGGACCTGGGCGATGTCGCACAAATAGCGATGGGTGGAGCACG
GAAGAAGATTGCATCCCAGATTATCGAGGGCAGCCTGTAGAGGAATGATC
GGGACTGCGGAGTGTTTACTCTTGCGTTCGCAAACAAGATCAGCAAACAC
GAGGACCTGGGCGATGTCGCACAAATAGCGATGGGTGGAGCACGGAAGAA
GATTGCATCCCAGATTATCGAGGGCAGCCTGTAG
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