mRNA_L-elsbetiae_contig1763.4977.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1763.4977.1
Unique NamemRNA_L-elsbetiae_contig1763.4977.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1763.4977.1 vs. uniprot
Match: A0A6H5JK97_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK97_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.480e-20
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -1 
Query:  722 KRTDRPLSYAQALLQTGCEETIEATVRKRRLCFAGFVMRMEDDRLPKRVL 871
            KR+DRPLSYAQAL+Q GCEETIEATVRKRRLCFAGFVMRMED RLPKR+L
Sbjct:   59 KRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRML 108
[Close]
BLAST of mRNA_L-elsbetiae_contig1763.4977.1 vs. uniprot
Match: A0A6H5J747_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J747_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.710e-20
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -1 
Query:  722 KRTDRPLSYAQALLQTGCEETIEATVRKRRLCFAGFVMRMEDDRLPKRVL 871
            KR+DRPLSYAQAL+Q GCEETIEATVRKRRLCFAGFVMRMED RLPKR+L
Sbjct:   59 KRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRML 108
[Close]
BLAST of mRNA_L-elsbetiae_contig1763.4977.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.010e-19
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = -1 
Query:  722 KRTDRPLSYAQALLQTGCEETIEATVRKRRLCFAGFVMRMEDDRLPKRVL 871
            KR+DRPLSYAQAL+Q GCEETIEATVRKRRLCFAGFVMRMED+RLPKR+L
Sbjct:   87 KRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRML 136
[Close]
BLAST of mRNA_L-elsbetiae_contig1763.4977.1 vs. uniprot
Match: A0A6H5K5W0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W0_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.900e-19
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -1 
Query:  722 KRTDRPLSYAQALLQTGCEETIEATVRKRRLCFAGFVMRMEDDRLPKRVL 871
            KR+DRPLSYAQAL+Q GCEETIEATVRKRRLCFAGFVMRMED RLPKR+L
Sbjct:  144 KRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRML 193
[Close]
BLAST of mRNA_L-elsbetiae_contig1763.4977.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.250e-19
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = -1 
Query:  722 KRTDRPLSYAQALLQTGCEETIEATVRKRRLCFAGFVMRMEDDRLPKRVL 871
            KR+DRPLSYAQAL+Q GCEETIEATVRKRRLCFAGFVMRMED+RLPKR+L
Sbjct:  121 KRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRML 170
[Close]
BLAST of mRNA_L-elsbetiae_contig1763.4977.1 vs. uniprot
Match: A0A6H5L053_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L053_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 5.860e-19
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = -1 
Query:  722 KRTDRPLSYAQALLQTGCEETIEATVRKRRLCFAGFVMRMEDDRLPKRVL 871
            KR+DRPLSYAQAL+Q GCEETIEATVRKRRLCFAGFVMRMED R PKR+L
Sbjct:   59 KRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRRPKRML 108
[Close]
BLAST of mRNA_L-elsbetiae_contig1763.4977.1 vs. uniprot
Match: A0A6H5KYA5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.670e-19
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -1 
Query:  722 KRTDRPLSYAQALLQTGCEETIEATVRKRRLCFAGFVMRMEDDRLPKRVL 871
            KR+DRPLSYAQAL+Q GCEETIEATVRKRRLCFAGFVMRMED RLPKR+L
Sbjct:  159 KRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRML 208
[Close]
BLAST of mRNA_L-elsbetiae_contig1763.4977.1 vs. uniprot
Match: A0A6H5KPQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ3_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 8.790e-19
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = -1 
Query:  722 KRTDRPLSYAQALLQTGCEETIEATVRKRRLCFAGFVMRMEDDRLPKRVL 871
            KR+DRPL YAQAL+Q GC+ETIEATVR+RRLCFAGFVMRMED RLPKR+L
Sbjct:   23 KRSDRPLPYAQALIQAGCDETIEATVRERRLCFAGFVMRMEDSRLPKRML 72
[Close]
BLAST of mRNA_L-elsbetiae_contig1763.4977.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.110e-18
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = -1 
Query:  722 KRTDRPLSYAQALLQTGCEETIEATVRKRRLCFAGFVMRMEDDRLPKRVL 871
            KR+DRPLSYAQAL+Q GCEETIEATVRKRRLCFAGFVMRMED+RLPKR+L
Sbjct:  144 KRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRML 193
[Close]
BLAST of mRNA_L-elsbetiae_contig1763.4977.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.530e-18
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = -1 
Query:  722 KRTDRPLSYAQALLQTGCEETIEATVRKRRLCFAGFVMRMEDDRLPKRVL 871
            KR+DRPLSYAQAL+Q GCEETIEATVRKRRLCFAGFVMRMED+RLPKR+L
Sbjct:  174 KRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRML 223
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1763.4977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK97_9PHAE1.480e-2090.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J747_9PHAE2.710e-2090.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6M5_9PHAE1.010e-1990.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5W0_9PHAE4.900e-1990.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCQ1_9PHAE5.250e-1990.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L053_9PHAE5.860e-1988.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYA5_9PHAE6.670e-1990.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KPQ3_9PHAE8.790e-1984.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSH7_9PHAE1.110e-1890.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB07_9PHAE1.530e-1890.00Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1763contigL-elsbetiae_contig1763:841..2841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size871
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1763.4977.1prot_L-elsbetiae_contig1763.4977.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1763 851..1822 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815734.4824443-UTR-L-elsbetiae_contig1763:840..8501622815734.4824443-UTR-L-elsbetiae_contig1763:840..850Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1763 841..850 +
1691683068.364841-UTR-L-elsbetiae_contig1763:840..8501691683068.364841-UTR-L-elsbetiae_contig1763:840..850Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1763 841..850 +
1622815734.5230236-UTR-L-elsbetiae_contig1763:1822..18971622815734.5230236-UTR-L-elsbetiae_contig1763:1822..1897Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1763 1823..1897 +
1691683068.399551-UTR-L-elsbetiae_contig1763:1822..18971691683068.399551-UTR-L-elsbetiae_contig1763:1822..1897Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1763 1823..1897 +
1622815734.5328145-UTR-L-elsbetiae_contig1763:2694..28411622815734.5328145-UTR-L-elsbetiae_contig1763:2694..2841Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1763 2695..2841 +
1691683068.4117398-UTR-L-elsbetiae_contig1763:2694..28411691683068.4117398-UTR-L-elsbetiae_contig1763:2694..2841Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1763 2695..2841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815734.4934213-CDS-L-elsbetiae_contig1763:850..9881622815734.4934213-CDS-L-elsbetiae_contig1763:850..988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1763 851..988 +
1691683068.3755262-CDS-L-elsbetiae_contig1763:850..9881691683068.3755262-CDS-L-elsbetiae_contig1763:850..988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1763 851..988 +
1622815734.508409-CDS-L-elsbetiae_contig1763:1321..18221622815734.508409-CDS-L-elsbetiae_contig1763:1321..1822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1763 1322..1822 +
1691683068.3911643-CDS-L-elsbetiae_contig1763:1321..18221691683068.3911643-CDS-L-elsbetiae_contig1763:1321..1822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1763 1322..1822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1763.4977.1

>prot_L-elsbetiae_contig1763.4977.1 ID=prot_L-elsbetiae_contig1763.4977.1|Name=mRNA_L-elsbetiae_contig1763.4977.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=213bp
MEKDVPLPPGVRERVVGHLLSLGATDKAVPAKKASALVKAVREGNETLVR
MLLGAAGRRAGKFWGPEVVSYAIVVAAGDGLARIVKMLITAEGEGRRQHW
ARTRVSGMPVLFSAALRGGLCPDGGRSPRGRRGRAGPRQRWPSRARLRGH
EASGGRHQRRRQGLRRQTHVGAGARFPGPSLGVVGCGAFSSRRQCWCWCW
RWRWCWCCQRSS*
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mRNA from alignment at L-elsbetiae_contig1763:841..2841+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1763.4977.1 ID=mRNA_L-elsbetiae_contig1763.4977.1|Name=mRNA_L-elsbetiae_contig1763.4977.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2001bp|location=Sequence derived from alignment at L-elsbetiae_contig1763:841..2841+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCCTCGTGATGGAAAAGGATGTTCCACTCCCTCCCGGCGTCAGGGAGA
GGGTGGTGGGCCACCTTCTTTCGCTGGGGGCGACTGACAAGGCCGTGCCC
GCGAAGAAGGCGAGCGCGCTCGTCAAAGCAGTGCGCGAAGGCAACGAGGT
AAGTTCCGATGACGTGATTTGTTTCCGGTTTCTTTGAACAATACTTTTCG
GGAAGAGGATATTTTAAACGGCCTTCATCACGTCATCCATCAGCCCATTC
TGCGAAGGACAGCTGCGCGATGCTCCTACAAATGTACACCCCGCAACGTC
CACGCCGAACTATCTCCGCATGTAGTACCTACGAGCACGAATTATGTTTG
TGTATTGTTCTTCAGCACGCTCACCAGCCCCTACACACAACCCACGAAAC
GCACGCCAAGAGGATGCCACCGCCGCGGCGACCCAAAGCATCAATTGATG
TTCCCTTGTTTTTTTTCGCATGTTTTTGCAGACCTTGGTACGCATGCTGC
TCGGCGCCGCTGGACGAAGGGCGGGAAAATTCTGGGGCCCTGAAGTGGTT
TCCTACGCCATTGTGGTGGCGGCCGGGGACGGGCTCGCGAGGATCGTCAA
GATGCTCATCACGGCGGAGGGCGAGGGCCGGCGGCAGCACTGGGCGAGGA
CCCGCGTGAGCGGCATGCCGGTCCTCTTCTCCGCGGCTTTGCGGGGGGGG
CTCTGTCCCGACGGTGGGCGTTCTCCTCGCGGCCGGCGCGGACGAGCAGG
TCCGCGACAGCGATGGCCATCGCGCGCGCGACTACGCGGGCATGAAGCTT
CCGGCGGACGGCACCAACGCAGACGCCAAGGCCTCCGCCGTCAGACGCAC
GTTGGAGCGGGCGCCCGCTTTCCGGGCCCGTCCCTGGGCGTGGTTGGTTG
CGGTGCGTTCTCCTCAAGGCGGCAGTGCTGGTGCTGGTGCTGGCGCTGGC
GCTGGTGCTGGTGCTGCCAGCGTTCTTCGTGAATCACGTCCCGCCCCCGC
AGGTGTTCGCATCTTCCGGCCGAGAGACCAGCGGTTCTTTACGACCCGGT
TTGATAGGTGAGGGGGAGGGGCCGCAAGGCAAAACACCCCCTGTAGGTGT
AGATATGGCGCATTTTGCTTTGGTCGTGTGCTCCTCTAACGGGGTGATAT
GTGAAATCGTATTCAATGAGGCGCAGACATGAGCTATTTCTTGATAAATG
CTCGCCGCTGAGTCCAGACTTTGTGATGAAACAAGCTCAGTCCTATTTTT
CTGGTATGTTTCGAGGGTGGGGCACGAACAACGAAGCGAATTAATTTAGG
GCATCACAAACCACCCAAAATCGTGCTGTGGATCTGCGGACTGGCTCTGT
CTCTCTCGGCGAGCCGAGCTCTTTTAAGCGACGATGAGAGTTAGTGCCCT
GCAAAGATTGACGCCTAATTTTTGTTTCCTACTATGCAGCCAAGGAGCTT
ATCCACACGTCCTCTGTCTCCTGGATTTTGAGTATTCCCTACAAGTTGAG
CGTTCGACGTCTCCATCTCTGCATGCATTAAGGCCCTGTGTTTTTTTACG
TCCCAGGAAATCCCGCCTTAAAAAACCCTCCCGCTCATGCGCCCTATTGA
AAACGACTCACATTTGTACCTGAACGTGTAGATTATCGCCGTCGAAGGGT
GGCAAACCATCTGGCCCGCTATGTAGGAAAAACTTGTTGGACTGCGCAAC
AAGTGCAAGCAATGAGTGCGCTCTGCCGGCCGCTGGAGCGATTGTGTGTT
GTCTTCACATTAAAAACCGTTCCGATCTCTCTATCCAGGTGGCAAACCCA
GTCTCTCTCCTGGCCGCCCTGGTACCCCTTGCCCCTCGACATCGTTCCCA
GCAGAACACGCTTGGGCAGGCGGTCGTCCTCCATGCGCATGACGAATCCC
GCGAAACACAGCCTCCGTTTGCGCACGGTGGCCTCGATAGTTTCCTCGCA
TCCGGTTTGGAGAAGGGCCTGGGCGTATGACAGGGGGCGGTCCGTGCGTT
T
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1763:841..2841+

>mRNA_L-elsbetiae_contig1763.4977.1 ID=mRNA_L-elsbetiae_contig1763.4977.1|Name=mRNA_L-elsbetiae_contig1763.4977.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1278bp|location=Sequence derived from alignment at L-elsbetiae_contig1763:841..2841+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAAAGGATGTTCCACTCCCTCCCGGCGTCAGGGAGAGGGTGGTGGG
CCACCTTCTTTCGCTGGGGGCGACTGACAAGGCCGTGCCCGCGAAGAAGG
CGAGCGCGCTCGTCAAAGCAGTGCGCGAAGGCAACGAGATGGAAAAGGAT
GTTCCACTCCCTCCCGGCGTCAGGGAGAGGGTGGTGGGCCACCTTCTTTC
GCTGGGGGCGACTGACAAGGCCGTGCCCGCGAAGAAGGCGAGCGCGCTCG
TCAAAGCAGTGCGCGAAGGCAACGAGACCTTGGTACGCATGCTGCTCGGC
GCCGCTGGACGAAGGGCGGGAAAATTCTGGGGCCCTGAAGTGGTTTCCTA
CGCCATTGTGGTGGCGGCCGGGGACGGGCTCGCGAGGATCGTCAAGATGC
TCATCACGGCGGAGGGCGAGGGCCGGCGGCAGCACTGGGCGAGGACCCGC
GTGAGCGGCATGCCGGTCCTCTTCTCCGCGGCTTTGCGGGGGGGGCTCTG
TCCCGACGGTGGGCGTTCTCCTCGCGGCCGGCGCGGACGAGCAGGTCCGC
GACAGCGATGGCCATCGCGCGCGCGACTACGCGGGCATGAAGCTTCCGGC
GGACGGCACCAACGCAGACGCCAAGGCCTCCGCCGTCAGACGCACGTTGG
AGCGGGCGCCCGCTTTCCGGGCCCGTCCCTGGGCGTGGTTGGTTGCGGTG
CGTTCTCCTCAAGGCGGCAGTGCTGGTGCTGGTGCTGGCGCTGGCGCTGG
TGCTGGTGCTGCCAGCGTTCTTCGTGAACCTTGGTACGCATGCTGCTCGG
CGCCGCTGGACGAAGGGCGGGAAAATTCTGGGGCCCTGAAGTGGTTTCCT
ACGCCATTGTGGTGGCGGCCGGGGACGGGCTCGCGAGGATCGTCAAGATG
CTCATCACGGCGGAGGGCGAGGGCCGGCGGCAGCACTGGGCGAGGACCCG
CGTGAGCGGCATGCCGGTCCTCTTCTCCGCGGCTTTGCGGGGGGGGCTCT
GTCCCGACGGTGGGCGTTCTCCTCGCGGCCGGCGCGGACGAGCAGGTCCG
CGACAGCGATGGCCATCGCGCGCGCGACTACGCGGGCATGAAGCTTCCGG
CGGACGGCACCAACGCAGACGCCAAGGCCTCCGCCGTCAGACGCACGTTG
GAGCGGGCGCCCGCTTTCCGGGCCCGTCCCTGGGCGTGGTTGGTTGCGGT
GCGTTCTCCTCAAGGCGGCAGTGCTGGTGCTGGTGCTGGCGCTGGCGCTG
GTGCTGGTGCTGCCAGCGTTCTTCGTGA
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