mRNA_L-elsbetiae_contig1760.4969.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1760.4969.1 vs. uniprot
Match: D8LSG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSG5_ECTSI) HSP 1 Score: 562 bits (1449), Expect = 3.010e-181 Identity = 482/1107 (43.54%), Postives = 557/1107 (50.32%), Query Frame = 1 Query: 88 PPEEPEVGAW---------QSFEELGVLGVDGTRKVAEKARRVYHAP-RGFEQPTETFARKTGMRDKGPPGYEYNDTEHLSVSAVAKKGAPGSAVFLAASDSRGSNALPGVRVRTYPTSPTRDNRLEAAKSAAQVRAEEARRMATKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------RALEDRALREALEAKAQAIAASPREGKAAVGKSRGGESGGGNWRKIKRGPATAEKKGFYHGIKVPLEAFEEPFAGGSELNALPGRLESLIFPHRYVDWPKENAALPALALDVQSSPVRHAVAFHSKQPRIVCYDPQRETRGWDGPGAYEWDDRPDDNTRTAAAATTASTAEGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNAMGTRPRGISVRDPERQSPAFREGSSGFVAPAQTNVRGFALSPS-------------------TGAEEVGSGXXXXXXXXXXXXXXXXXXXXXXK-------KPQRLWMFQPGRKEVRPTPATENWDGPGAYAIGTDTGVRVKEPGRNSPSFLEGSGGKRGREAARRDRENWI--GTPRSSPEGYSEAFPRTPSDGGRESPATPDILTNWSSSCLEFTPPEPKTVAHALRRQGPNRFGACFLSVTERFDPDTPFGLSPATTPPGLGPGAGERSNGGDIAGPVERYDLISSRQQPPPANTWLGTSIRPGLPYNPSFKTDDTGAGAAARHRDXXXXXXPSQPFSPLSLPHLARDDAAADASESPTSGRDSTTMSGGAGRRSDNDSPDLAPLALAAVGKRLRQTTPGWVLSLPLSSTTAAIAAD------GLARTWAGRGAGDGSDVGGGSGKGGSGANRQQELNFVCIDDTNRGSNGKLPER-DAMTLPSQAGGSVVLSVATAAGGSPAVAEHRRVATATLRLALXXXXXXXXXXXXXNRFKKSQLSSFSAPSACGLSFARGXXXXXXNPST-GSNATGKACTDSPAVDVAVTEEGLAAAELSMTAAAVVAQSAR-ERGLIRTVGRPKRGPCMFIRAASG--EIGR---RAGST-RT-------ELPGYS-GSGRGRGEKGFSPRPMWEAEATGGLLGPGETKVLVC 3204 PPEE EV A Q+F+ELGVLGVDG+R A VYH P RGFEQPTETF RKTGMRDKGP GYEYN+TE+LSVSA K PG PTRD+RLE A AAQ RA+EAR++A K R+LED+ALREA+EAKAQA+AASPREGK R GGGN RK+KRGPA ++K+ YHGI +P FE+PFAGG+E++ALPGRLESLIFP RYVDWPKE+A+LPALALDVQ SP+RHAVAF SKQPRIVCYDPQRETRGWDGPGAYEWDDRPDDN XXXXXXXXXXXXXXXXXX G RPRGI+VRDP R SPAFREGSS F++P QTNVRGFAL+PS TGAE XXXXXXXXXXXXXX K KPQ LWMF+P +E P AT W+GPGAYAI TGVRVKEPGR SP F EGSGGKRGR+ RR+RE + G SS E F P + +SP TP+ L +WSS EF+PP PK SNGGD+AGPVERYDL+SSR+QPPPA + G++ G D GAG R G S ++ LAPL+LAAVG RL + + L + AA GLAR WAGR A D GG G GG+ A+RQ L D T+ +NG + + D M PS + +++T AG RRVA ++ R KK +SS + A ++ G N S G A VA+TE GLAAAE++ A +A E+ LIRTVGR KRGPCM S EIG+ RAG+T RT L G S GS RG P WE E GGLLG GETKVL C Sbjct: 3 PPEEVEVTADRTPNGVPHDQTFDELGVLGVDGSRM----ACGVYHPPPRGFEQPTETFVRKTGMRDKGPLGYEYNNTEYLSVSAAVKPCTPG---------------------------PTRDDRLEDAGKAAQTRADEARKIAMKSRWDRHVLRANPAKTAKSRTSTNSPGSTNKPSALSWKQSTGSLTPIIRPPRSRSLEDQALREAIEAKAQAMAASPREGKPDPETQRR-LRGGGNRRKLKRGPAASDKRDMYHGIAMPGNTFEKPFAGGNEVDALPGRLESLIFPQRYVDWPKEDASLPALALDVQRSPIRHAVAFRSKQPRIVCYDPQRETRGWDGPGAYEWDDRPDDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKSAEKG-------GARPRGIAVRDPGRPSPAFREGSSAFLSPTQTNVRGFALAPSSKRVDAAAAAAAEGRDVTATGAEXXXXXXXXXXXXXXXXXXXSARSAAKKKAHGGHRRKPQTLWMFKPPGREPEPAVATLGWEGPGAYAIEIGTGVRVKEPGRKSPVFREGSGGKRGRDVDRREREKMVSPGGVSSSAGPMPEGFAVGPGENRMDSPGTPESLASWSSLYPEFSPPAPKM------------------------------------------------SNGGDMAGPVERYDLVSSRRQPPPATSIGGSNAADG----------DDGAGGRTR-----------------------------------------------GGVASGSEGGALAPLSLAAVGTRLVSSQKRTLARRVLPAAAAAXXXXXXXXXAGLARNWAGRQA-DAHAARGGRGPGGAEADRQDGLRS---DSTDVRANGMMTQGVDDMPEPSSTVAELFEALSTDAGPPT---HGRRVAASSYR-------RQGWRHEEYQSKKKRSVSSVNEIGAGDVAQTAGGGLATRNTSAFGGGGPASHAPRQTADGVAMTEAGLAAAEMAAAEIEKAATAAAAEKSLIRTVGRAKRGPCMLTLTPSSSYEIGQQAARAGTTCRTGEVLQEQTLRGDSFGSCRG-------PLVFWEVEPAGGLLGSGETKVLRC 944 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1760.4969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1760.4969.1 >prot_L-elsbetiae_contig1760.4969.1 ID=prot_L-elsbetiae_contig1760.4969.1|Name=mRNA_L-elsbetiae_contig1760.4969.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1069bp QNGKRKVHADVNRGQTPRRKMAITAGAVPPPEEPEVGAWQSFEELGVLGVback to top mRNA from alignment at L-elsbetiae_contig1760:3594..13054- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1760.4969.1 ID=mRNA_L-elsbetiae_contig1760.4969.1|Name=mRNA_L-elsbetiae_contig1760.4969.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9461bp|location=Sequence derived from alignment at L-elsbetiae_contig1760:3594..13054- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1760:3594..13054- >mRNA_L-elsbetiae_contig1760.4969.1 ID=mRNA_L-elsbetiae_contig1760.4969.1|Name=mRNA_L-elsbetiae_contig1760.4969.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6414bp|location=Sequence derived from alignment at L-elsbetiae_contig1760:3594..13054- (Laminarionema elsbetiae ELsaHSoW15)back to top |