mRNA_L-elsbetiae_contig17599.4965.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17599.4965.1
Unique NamemRNA_L-elsbetiae_contig17599.4965.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17599.4965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17599contigL-elsbetiae_contig17599:1552..2582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1032
Cds size1029
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.6723502-CDS-L-elsbetiae_contig17599:1551..25801622815732.6723502-CDS-L-elsbetiae_contig17599:1551..2580Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17599 1552..2580 +
1691683066.9653804-CDS-L-elsbetiae_contig17599:1551..25801691683066.9653804-CDS-L-elsbetiae_contig17599:1551..2580Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17599 1552..2580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17599.4965.1prot_L-elsbetiae_contig17599.4965.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17599 1552..2580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17599.4965.1

>prot_L-elsbetiae_contig17599.4965.1 ID=prot_L-elsbetiae_contig17599.4965.1|Name=mRNA_L-elsbetiae_contig17599.4965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=343bp
QQQQHEHEHEREANSKLSATWNGSGTAAAAAVTWNGSGTAAAATWNGSET
AAAAACFTPDGDGPAGGSGAVAGDGDALGLLPLPRCALTGGATAPLPRAE
RYVDAVAPRRKSDPPHSCLSPPPSRASAVAAGGTATAVAAELRGCGKSRE
PGRRGSSGDDAGAGRDSGRAASVEAVGGGAGMVDRSGSGGGGGDGGGGGG
GGGGGGAGPRPTTAASPRQRPPLPPRSLSPPPPLPPRSLPVVAESDSAAA
APKSAAAAAAALEDALELSRLSQHRSTRRSSDASYDPDSMIEAAAASTGH
EACGGLGAAGLTAAGLKAGGLKAGGFKAGGPNSVFASTSAAQG
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mRNA from alignment at L-elsbetiae_contig17599:1552..2582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17599.4965.1 ID=mRNA_L-elsbetiae_contig17599.4965.1|Name=mRNA_L-elsbetiae_contig17599.4965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1031bp|location=Sequence derived from alignment at L-elsbetiae_contig17599:1552..2582+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCAGCAGCAGCATGAGCATGAGCACGAGCGCGAGGCGAACTCTAAGTT
GTCGGCAACATGGAACGGTTCCGGGACGGCTGCGGCTGCGGCGGTGACAT
GGAACGGTTCCGGGACGGCGGCGGCAGCGACATGGAACGGCTCCGAAACG
GCGGCGGCGGCGGCGTGCTTCACGCCCGACGGTGATGGTCCCGCGGGAGG
CAGTGGAGCGGTCGCTGGAGACGGGGACGCACTAGGACTGCTGCCGTTGC
CTCGCTGCGCCCTGACGGGCGGCGCCACCGCGCCCCTGCCCCGCGCCGAG
CGCTACGTCGACGCCGTCGCCCCGCGAAGGAAGTCGGACCCGCCTCATTC
TTGCCTCTCTCCCCCGCCGTCCCGTGCCAGCGCCGTTGCGGCCGGAGGGA
CGGCGACCGCCGTCGCGGCAGAGCTCCGCGGGTGCGGAAAGAGCCGGGAG
CCGGGTCGTCGTGGCAGCAGCGGCGACGACGCCGGCGCAGGCCGAGACAG
CGGCCGGGCGGCAAGCGTCGAAGCCGTCGGCGGTGGTGCTGGCATGGTCG
ACCGCAGTGGAAGTGGCGGCGGCGGCGGCGATGGTGGCGGTGGCGGCGGT
GGCGGCGGTGGCGGCGGGGCCGGCCCTCGCCCGACCACCGCCGCCTCGCC
GCGGCAGCGCCCTCCGCTTCCACCTCGATCTCTGTCACCGCCACCGCCGC
TGCCCCCGCGATCTCTACCCGTGGTGGCGGAGAGCGACTCGGCAGCAGCA
GCGCCGAAGTCGGCGGCGGCGGCGGCGGCAGCGCTCGAAGATGCGCTGGA
ATTGTCGCGGCTGTCCCAACACCGGAGCACCCGCCGCTCATCGGATGCCT
CCTATGATCCCGACTCAATGATCGAGGCGGCGGCGGCGTCGACGGGCCAC
GAAGCTTGCGGCGGGCTTGGTGCCGCAGGGCTTACGGCCGCAGGGCTCAA
GGCCGGGGGACTCAAGGCCGGAGGATTCAAGGCCGGAGGGCCCAATTCGG
TGTTCGCGTCGACGTCTGCGGCGCAAGGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17599:1552..2582+

>mRNA_L-elsbetiae_contig17599.4965.1 ID=mRNA_L-elsbetiae_contig17599.4965.1|Name=mRNA_L-elsbetiae_contig17599.4965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2058bp|location=Sequence derived from alignment at L-elsbetiae_contig17599:1552..2582+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCAGCAGCAGCATGAGCATGAGCACGAGCGCGAGGCGAACTCTAAGTT
GTCGGCAACATGGAACGGTTCCGGGACGGCTGCGGCTGCGGCGGTGACAT
GGAACGGTTCCGGGACGGCGGCGGCAGCGACATGGAACGGCTCCGAAACG
GCGGCGGCGGCGGCGTGCTTCACGCCCGACGGTGATGGTCCCGCGGGAGG
CAGTGGAGCGGTCGCTGGAGACGGGGACGCACTAGGACTGCTGCCGTTGC
CTCGCTGCGCCCTGACGGGCGGCGCCACCGCGCCCCTGCCCCGCGCCGAG
CGCTACGTCGACGCCGTCGCCCCGCGAAGGAAGTCGGACCCGCCTCATTC
TTGCCTCTCTCCCCCGCCGTCCCGTGCCAGCGCCGTTGCGGCCGGAGGGA
CGGCGACCGCCGTCGCGGCAGAGCTCCGCGGGTGCGGAAAGAGCCGGGAG
CCGGGTCGTCGTGGCAGCAGCGGCGACGACGCCGGCGCAGGCCGAGACAG
CGGCCGGGCGGCAAGCGTCGAAGCCGTCGGCGGTGGTGCTGGCATGGTCG
ACCGCAGTGGAAGTGGCGGCGGCGGCGGCGATGGTGGCGGTGGCGGCGGT
GGCGGCGGTGGCGGCGGGGCCGGCCCTCGCCCGACCACCGCCGCCTCGCC
GCGGCAGCGCCCTCCGCTTCCACCTCGATCTCTGTCACCGCCACCGCCGC
TGCCCCCGCGATCTCTACCCGTGGTGGCGGAGAGCGACTCGGCAGCAGCA
GCGCCGAAGTCGGCGGCGGCGGCGGCGGCAGCGCTCGAAGATGCGCTGGA
ATTGTCGCGGCTGTCCCAACACCGGAGCACCCGCCGCTCATCGGATGCCT
CCTATGATCCCGACTCAATGATCGAGGCGGCGGCGGCGTCGACGGGCCAC
GAAGCTTGCGGCGGGCTTGGTGCCGCAGGGCTTACGGCCGCAGGGCTCAA
GGCCGGGGGACTCAAGGCCGGAGGATTCAAGGCCGGAGGGCCCAATTCGG
TGTTCGCGTCGACGTCTGCGGCGCAAGGCCAGCAGCAGCAGCATGAGCAT
GAGCACGAGCGCGAGGCGAACTCTAAGTTGTCGGCAACATGGAACGGTTC
CGGGACGGCTGCGGCTGCGGCGGTGACATGGAACGGTTCCGGGACGGCGG
CGGCAGCGACATGGAACGGCTCCGAAACGGCGGCGGCGGCGGCGTGCTTC
ACGCCCGACGGTGATGGTCCCGCGGGAGGCAGTGGAGCGGTCGCTGGAGA
CGGGGACGCACTAGGACTGCTGCCGTTGCCTCGCTGCGCCCTGACGGGCG
GCGCCACCGCGCCCCTGCCCCGCGCCGAGCGCTACGTCGACGCCGTCGCC
CCGCGAAGGAAGTCGGACCCGCCTCATTCTTGCCTCTCTCCCCCGCCGTC
CCGTGCCAGCGCCGTTGCGGCCGGAGGGACGGCGACCGCCGTCGCGGCAG
AGCTCCGCGGGTGCGGAAAGAGCCGGGAGCCGGGTCGTCGTGGCAGCAGC
GGCGACGACGCCGGCGCAGGCCGAGACAGCGGCCGGGCGGCAAGCGTCGA
AGCCGTCGGCGGTGGTGCTGGCATGGTCGACCGCAGTGGAAGTGGCGGCG
GCGGCGGCGATGGTGGCGGTGGCGGCGGTGGCGGCGGTGGCGGCGGGGCC
GGCCCTCGCCCGACCACCGCCGCCTCGCCGCGGCAGCGCCCTCCGCTTCC
ACCTCGATCTCTGTCACCGCCACCGCCGCTGCCCCCGCGATCTCTACCCG
TGGTGGCGGAGAGCGACTCGGCAGCAGCAGCGCCGAAGTCGGCGGCGGCG
GCGGCGGCAGCGCTCGAAGATGCGCTGGAATTGTCGCGGCTGTCCCAACA
CCGGAGCACCCGCCGCTCATCGGATGCCTCCTATGATCCCGACTCAATGA
TCGAGGCGGCGGCGGCGTCGACGGGCCACGAAGCTTGCGGCGGGCTTGGT
GCCGCAGGGCTTACGGCCGCAGGGCTCAAGGCCGGGGGACTCAAGGCCGG
AGGATTCAAGGCCGGAGGGCCCAATTCGGTGTTCGCGTCGACGTCTGCGG
CGCAAGGC
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