mRNA_L-elsbetiae_contig17599.4964.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17599.4964.1
Unique NamemRNA_L-elsbetiae_contig17599.4964.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17599.4964.1 vs. uniprot
Match: A0A6H5KG52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG52_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.290e-32
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:    1 EIERVGLEGGVVGLSEVQCLLAARDILLSTKRTSSGGDVWVCVDRLCGTARELVVVCPASNEADPLHIAAEFEADD 228
            EI R G EGG+VGL+EVQC LAARDILLSTKRTSSGGDVWVCVDRLCG +RELVVVCPASNE D LHI+AEFE D+
Sbjct:  294 EISRAGTEGGIVGLTEVQCFLAARDILLSTKRTSSGGDVWVCVDRLCGMSRELVVVCPASNETDSLHISAEFEIDN 369
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BLAST of mRNA_L-elsbetiae_contig17599.4964.1 vs. uniprot
Match: D8LM66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM66_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 2.550e-17
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:   91 KRTSSGGDVWVCVDRLCGTARELVVVCPASNEADPLHIAAEFEADDPDP-------KKGPAAAAAPAATPSPLLSLS 300
            +RTSSGGDVWVCVDRLCG +RELVVVCPA+NEADPLHI+AEFE D+          +K    AA P+  P P  +LS
Sbjct:  149 ERTSSGGDVWVCVDRLCGMSRELVVVCPATNEADPLHISAEFEIDNSSDSFGLNLRRKREGGAALPSPLPPPPFALS 225
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BLAST of mRNA_L-elsbetiae_contig17599.4964.1 vs. uniprot
Match: A0A7S1FMB8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMB8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.420e-8
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   37 GLSEVQCLLAARDILLSTKRTSSGGDVWVCVDRLCGTARELVVVCPASNEADPL 198
            G+SEVQ +  ARDILL+  RT SGGD + CVD LC +  ++V +CP SN+A+PL
Sbjct:  683 GISEVQAISFARDILLAGNRTRSGGDAYYCVDLLCRS--DIVAICPHSNDAEPL 734
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BLAST of mRNA_L-elsbetiae_contig17599.4964.1 vs. uniprot
Match: D7G7X5_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.700e-8
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   10 RVGLEGGVVGLSEVQCLLAARDILLSTKRTSSGGDVWVCVDRLCGTARELVVVCPASNEADPLHI 204
            R+     +  LSE Q LLAARD+LL+  RT+SGGD ++ VD LC     LVV+ PAS EA+PL I
Sbjct:  209 RLSASDSLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCRNP-PLVVLVPASQEAEPLDI 272
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BLAST of mRNA_L-elsbetiae_contig17599.4964.1 vs. uniprot
Match: B8C5V8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5V8_THAPS)

HSP 1 Score: 60.1 bits (144), Expect = 1.210e-7
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   22 EGGVVGLSEVQCLLAARDILLSTKRTSSGGDVWVCVDRLCGTARELVVVCPASNEADPLHI 204
            +G    ++EVQ +  ARDI+L+T RT SGGD + C++ LC   R+LVV+CP S  A PL I
Sbjct:  408 DGKQSSITEVQAVSYARDIMLATDRTRSGGDSYYCIENLC-LNRDLVVICPTSTVAAPLSI 467
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17599.4964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KG52_9PHAE1.290e-3282.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM66_ECTSI2.550e-1761.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1FMB8_9STRA1.420e-855.56Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
D7G7X5_ECTSI2.700e-852.31PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
B8C5V8_THAPS1.210e-749.18Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17599contigL-elsbetiae_contig17599:468..1480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue3.6e-07
Seed eggNOG ortholog2880.D7G7X5
Hectar predicted targeting categoryother localisation
EggNOG OGs2DN4Z@1,2S66D@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_002650.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size462
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.6167781-CDS-L-elsbetiae_contig17599:467..5381622815732.6167781-CDS-L-elsbetiae_contig17599:467..538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17599 468..538 +
1691683066.9460738-CDS-L-elsbetiae_contig17599:467..5381691683066.9460738-CDS-L-elsbetiae_contig17599:467..538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17599 468..538 +
1622815732.6297214-CDS-L-elsbetiae_contig17599:1091..14791622815732.6297214-CDS-L-elsbetiae_contig17599:1091..1479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17599 1092..1479 +
1691683066.956441-CDS-L-elsbetiae_contig17599:1091..14791691683066.956441-CDS-L-elsbetiae_contig17599:1091..1479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17599 1092..1479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17599.4964.1prot_L-elsbetiae_contig17599.4964.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17599 468..1479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17599.4964.1

>prot_L-elsbetiae_contig17599.4964.1 ID=prot_L-elsbetiae_contig17599.4964.1|Name=mRNA_L-elsbetiae_contig17599.4964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
EIERVGLEGGVVGLSEVQCLLAARDILLSTKRTSSGGDVWVCVDRLCGTA
RELVVVCPASNEADPLHIAAEFEADDPDPKKGPAAAAAPAATPSPLLSLS
ATVGGVVSAKGSVSSSSPRNGGRLGAFSTSVGLVRVETEAAAAPRGGGDG
GAA
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mRNA from alignment at L-elsbetiae_contig17599:468..1480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17599.4964.1 ID=mRNA_L-elsbetiae_contig17599.4964.1|Name=mRNA_L-elsbetiae_contig17599.4964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1013bp|location=Sequence derived from alignment at L-elsbetiae_contig17599:468..1480+ (Laminarionema elsbetiae ELsaHSoW15)
GAGATCGAGCGCGTTGGGCTGGAAGGTGGTGTCGTGGGGCTTTCGGAGGT
CCAGTGTCTCTTGGCGGCGAGGTGGGGGCCCTTTCGGATTCCTTGGGGGG
GTTCGTGTGCCGTGGATGGGCATGTGTGGGCATATAGTCTACAGATCCCC
CGGAAGAGGCAGGCTGTTTCGCTTTACACTCGGATATAAAAAAATCACCA
GGGCGCTGAGTCGGCTCTTTCACCTCATCGCCCCCTGTGATTCTACAACC
GGCATCCAAGCAGGGGGCGGACGATGTTGGTGGTATTGTTTTGGTTGAGA
GGAGGGGGGAGGTGGGGGGGGTCAGGGGGGGCGAGAGATTACAGGAGGTA
CAGCACCTATTTTTTTATTCAAGAGGATAAGGAGGGTGAGCCTGAGCCCA
AGGCATATCGAGATCGCACCACCGACCAGGGAACTTAGGTTGGAACTCTT
AACTTTGTGCCGCGCGCGTCACAGGCGATTTTTTTTTCTTCAGGTATTTA
CATTGTTATATGTTTCATCCGCGTCCCCCAAAAATGTCCACCCTCCCTCC
CGCCCTGCCTCGCCTGCCTGCCCCCCTCCCGCTCCCCACGGCCGCGCCGT
CCCCCCTTCCGTCCGCCTCTCCAGGGACATTCTGCTCTCTACGAAGCGTA
CGTCCAGCGGCGGCGACGTCTGGGTTTGCGTGGACCGCCTGTGCGGCACG
GCCCGGGAGCTCGTGGTGGTCTGCCCGGCCTCCAACGAGGCCGACCCGCT
GCACATCGCGGCGGAGTTTGAGGCCGACGATCCCGACCCGAAGAAAGGCC
CGGCGGCGGCGGCGGCGCCTGCGGCGACGCCGTCGCCGCTGCTGTCGTTG
TCTGCGACGGTGGGAGGGGTGGTGTCCGCGAAGGGGTCGGTGTCATCGTC
GTCCCCGAGAAACGGTGGCCGCCTGGGAGCGTTCAGCACGTCGGTGGGTT
TAGTCCGAGTGGAGACGGAGGCGGCGGCGGCGCCGCGTGGAGGAGGGGAC
GGCGGCGCTGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17599:468..1480+

>mRNA_L-elsbetiae_contig17599.4964.1 ID=mRNA_L-elsbetiae_contig17599.4964.1|Name=mRNA_L-elsbetiae_contig17599.4964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig17599:468..1480+ (Laminarionema elsbetiae ELsaHSoW15)
GAGATCGAGCGCGTTGGGCTGGAAGGTGGTGTCGTGGGGCTTTCGGAGGT
CCAGTGTCTCTTGGCGGCGAGGAGATCGAGCGCGTTGGGCTGGAAGGTGG
TGTCGTGGGGCTTTCGGAGGTCCAGTGTCTCTTGGCGGCGAGGGACATTC
TGCTCTCTACGAAGCGTACGTCCAGCGGCGGCGACGTCTGGGTTTGCGTG
GACCGCCTGTGCGGCACGGCCCGGGAGCTCGTGGTGGTCTGCCCGGCCTC
CAACGAGGCCGACCCGCTGCACATCGCGGCGGAGTTTGAGGCCGACGATC
CCGACCCGAAGAAAGGCCCGGCGGCGGCGGCGGCGCCTGCGGCGACGCCG
TCGCCGCTGCTGTCGTTGTCTGCGACGGTGGGAGGGGTGGTGTCCGCGAA
GGGGTCGGTGTCATCGTCGTCCCCGAGAAACGGTGGCCGCCTGGGAGCGT
TCAGCACGTCGGTGGGTTTAGTCCGAGTGGAGACGGAGGCGGCGGCGGCG
CCGCGTGGAGGAGGGGACGGCGGCGCTGCCGGACATTCTGCTCTCTACGA
AGCGTACGTCCAGCGGCGGCGACGTCTGGGTTTGCGTGGACCGCCTGTGC
GGCACGGCCCGGGAGCTCGTGGTGGTCTGCCCGGCCTCCAACGAGGCCGA
CCCGCTGCACATCGCGGCGGAGTTTGAGGCCGACGATCCCGACCCGAAGA
AAGGCCCGGCGGCGGCGGCGGCGCCTGCGGCGACGCCGTCGCCGCTGCTG
TCGTTGTCTGCGACGGTGGGAGGGGTGGTGTCCGCGAAGGGGTCGGTGTC
ATCGTCGTCCCCGAGAAACGGTGGCCGCCTGGGAGCGTTCAGCACGTCGG
TGGGTTTAGTCCGAGTGGAGACGGAGGCGGCGGCGGCGCCGCGTGGAGGA
GGGGACGGCGGCGCTGCC
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