mRNA_L-elsbetiae_contig17594.4961.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17594.4961.1
Unique NamemRNA_L-elsbetiae_contig17594.4961.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17594.4961.1 vs. uniprot
Match: D8LM78_ECTSI (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM78_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.600e-15
Identity = 43/52 (82.69%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  160 KRSTRRPSSPPSENLGNLGVFKVLGEAFMRRFNCYSDQVSAAFDRVSDIKVV 315
            KR    P S  SEN GNLGVFKVLGEAFMRRFN YSDQVSAAFDRVSDIKVV
Sbjct:  485 KRKKAAPLSS-SENHGNLGVFKVLGEAFMRRFNAYSDQVSAAFDRVSDIKVV 535
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17594.4961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM78_ECTSI2.600e-1582.69Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17594contigL-elsbetiae_contig17594:324..1242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.4829917-CDS-L-elsbetiae_contig17594:325..3671622815732.4829917-CDS-L-elsbetiae_contig17594:325..367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17594 326..367 -
1691683066.8908796-CDS-L-elsbetiae_contig17594:325..3671691683066.8908796-CDS-L-elsbetiae_contig17594:325..367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17594 326..367 -
1622815732.4950037-CDS-L-elsbetiae_contig17594:969..12421622815732.4950037-CDS-L-elsbetiae_contig17594:969..1242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17594 970..1242 -
1691683066.9009333-CDS-L-elsbetiae_contig17594:969..12421691683066.9009333-CDS-L-elsbetiae_contig17594:969..1242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17594 970..1242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17594.4961.1prot_L-elsbetiae_contig17594.4961.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17594 326..1242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17594.4961.1

>prot_L-elsbetiae_contig17594.4961.1 ID=prot_L-elsbetiae_contig17594.4961.1|Name=mRNA_L-elsbetiae_contig17594.4961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
SQSVTTAVGGALRGEARNKLAPWSASRAGSGGGGGGPHTPGDRARSVSLS
VRPKRSTRRPSSPPSENLGNLGVFKVLGEAFMRRFNCYSDQVSAAFDRVS
DIKVV
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mRNA from alignment at L-elsbetiae_contig17594:324..1242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17594.4961.1 ID=mRNA_L-elsbetiae_contig17594.4961.1|Name=mRNA_L-elsbetiae_contig17594.4961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=919bp|location=Sequence derived from alignment at L-elsbetiae_contig17594:324..1242- (Laminarionema elsbetiae ELsaHSoW15)
TCGCAGTCGGTCACGACAGCAGTCGGCGGTGCTCTAAGGGGAGAGGCGCG
AAACAAGCTGGCTCCGTGGTCAGCGAGCCGTGCCGGCAGCGGCGGCGGCG
GCGGCGGTCCCCACACGCCGGGAGACCGGGCGCGATCGGTGTCTCTTTCG
GTGCGGCCGAAGCGATCGACCCGGCGGCCCTCGTCGCCCCCCTCGGAGAA
CCTTGGAAACCTCGGTGTCTTCAAAGTGCTCGGGGAGGCGTTCATGCGGC
GGTTCAACTGCTACTCTGACCAGGTGCGCGAGAGTTAACGGGCTGCGGAG
GCGTTCCTTTTTTTTTTTTTTTCGTCCGTCCGTCCACGGAGCGAGTGCTT
CTCGGCTTGGTGAAAGTCATCGTGTAGGGGGTCACGCACGGGTGCTGAGC
TCGGCGCAACGCCCAGGGCAAACAGGTCGGCGGTGTTGTTCTATGTTCGG
GAGTACTGGTAGCATTTTTTGGCGTCGTCAAGTCAAATCCGGAACTGCGT
GTGCCTGTCAAGCGCCCCCAGACCACGCCAAATGCTGCTACTCTTGCGCC
CTCCGAGTTTTTTTCAGATTTTCGTCTTCTCGAAAGCTTGGCGCACAGCG
TTTAACACTCGTGCCCGGCAATCAAACGTACCTTTCATGTACACCCCAAA
ACTATTTATTACCTTTCTTGACCGGGTGTTCTCTCTGTCTCGCCTCTGCC
TCGTCCCGCCTTGTCTTTCTCGCGTGCCGTGTCGTGTCGTGCTTGTGCCG
TACCGTACCGTACCGTGCTTGTGCCGTGCTTGTGCCGTGCTTGTGCCGTG
CTTGTGCCGTGCTTGTGCCGTGCTTGTGCCGTGCCGTGCCGTGCTTGTGC
CGGCCTGCTTGCCGATTCGGCGCAGGTGAGCGCGGCGTTCGACCGCGTGT
CCGACATCAAGGTGGTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17594:324..1242-

>mRNA_L-elsbetiae_contig17594.4961.1 ID=mRNA_L-elsbetiae_contig17594.4961.1|Name=mRNA_L-elsbetiae_contig17594.4961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig17594:324..1242- (Laminarionema elsbetiae ELsaHSoW15)
TCGCAGTCGGTCACGACAGCAGTCGGCGGTGCTCTAAGGGGAGAGGCGCG
AAACAAGCTGGCTCCGTGGTCAGCGAGCCGTGCCGGCAGCGGCGGCGGCG
GCGGCGGTCCCCACACGCCGGGAGACCGGGCGCGATCGGTGTCTCTTTCG
GTGCGGCCGAAGCGATCGACCCGGCGGCCCTCGTCGCCCCCCTCGGAGAA
CCTTGGAAACCTCGGTGTCTTCAAAGTGCTCGGGGAGGCGTTCATGCGGC
GGTTCAACTGCTACTCTGACCAGTCGCAGTCGGTCACGACAGCAGTCGGC
GGTGCTCTAAGGGGAGAGGCGCGAAACAAGCTGGCTCCGTGGTCAGCGAG
CCGTGCCGGCAGCGGCGGCGGCGGCGGCGGTCCCCACACGCCGGGAGACC
GGGCGCGATCGGTGTCTCTTTCGGTGCGGCCGAAGCGATCGACCCGGCGG
CCCTCGTCGCCCCCCTCGGAGAACCTTGGAAACCTCGGTGTCTTCAAAGT
GCTCGGGGAGGCGTTCATGCGGCGGTTCAACTGCTACTCTGACCAGGTGA
GCGCGGCGTTCGACCGCGTGTCCGACATCAAGGTGGTGGTGAGCGCGGCG
TTCGACCGCGTGTCCGACATCAAGGTGGTG
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