mRNA_L-elsbetiae_contig17578.4955.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17578.4955.1
Unique NamemRNA_L-elsbetiae_contig17578.4955.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17578.4955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17578contigL-elsbetiae_contig17578:90..642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size555
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.8979754-UTR-L-elsbetiae_contig17578:89..2971622815731.8979754-UTR-L-elsbetiae_contig17578:89..297Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17578 90..297 +
1691683066.4850228-UTR-L-elsbetiae_contig17578:89..2971691683066.4850228-UTR-L-elsbetiae_contig17578:89..297Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17578 90..297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.910033-CDS-L-elsbetiae_contig17578:297..6421622815731.910033-CDS-L-elsbetiae_contig17578:297..642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17578 298..642 +
1691683066.5007355-CDS-L-elsbetiae_contig17578:297..6421691683066.5007355-CDS-L-elsbetiae_contig17578:297..642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17578 298..642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17578.4955.1prot_L-elsbetiae_contig17578.4955.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17578 298..642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17578.4955.1

>prot_L-elsbetiae_contig17578.4955.1 ID=prot_L-elsbetiae_contig17578.4955.1|Name=mRNA_L-elsbetiae_contig17578.4955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MHACIACMHAHIRVLREISWRGYFHFSYYMVYMEIYTKYIYFDLFIFLPR
IYFQGSMMGSLSRGHLARALNRGLSHTHPEGFLFPEAPHSALLRCLRNII
LSPCYFTSDFARDQL
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mRNA from alignment at L-elsbetiae_contig17578:90..642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17578.4955.1 ID=mRNA_L-elsbetiae_contig17578.4955.1|Name=mRNA_L-elsbetiae_contig17578.4955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=553bp|location=Sequence derived from alignment at L-elsbetiae_contig17578:90..642+ (Laminarionema elsbetiae ELsaHSoW15)
TCTCGTTTGGCACTCATGGCCGCGGTCTGCCTGCCCACCACGCCACACAC
ATCCATGAGCCCCGACACCTCGCGTCTCGCATCTCGCATCCCTGCAAAAC
CGGCGTGGGCGTTTTTTTTGGCGGAGGGTTCGTTGGCTGGCTGCGGAGGA
CAGATGAGGGCAACGGGCGGAGTGCTCAAAAACCGTGTAACAGCCAGGGC
TCCTGCGCATGCATGCATGCATTGCATGCATGCATGCACACATACGAGTT
TTGCGAGAGATCAGTTGGCGAGGATACTTTCATTTTTCATATTATATGGT
CTATATGGAAATATATACGAAGTATATATATTTTGATTTATTTATTTTCC
TTCCTCGCATTTATTTCCAGGGCTCGATGATGGGCTCCTTGTCACGAGGG
CATCTTGCCAGAGCACTGAACCGTGGGTTGTCACACACACACCCAGAAGG
GTTCCTTTTCCCCGAGGCCCCCCACTCCGCCCTTCTGCGGTGCTTGCGTA
ATATTATTTTGTCGCCGTGTTATTTTACATCTGATTTTGCGAGAGATCAG
TTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17578:90..642+

>mRNA_L-elsbetiae_contig17578.4955.1 ID=mRNA_L-elsbetiae_contig17578.4955.1|Name=mRNA_L-elsbetiae_contig17578.4955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig17578:90..642+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATGCATGCATTGCATGCATGCATGCACACATACGAGTTTTGCGAGA
GATCAGTTGGCGAGGATACTTTCATTTTTCATATTATATGGTCTATATGG
AAATATATACGAAGTATATATATTTTGATTTATTTATTTTCCTTCCTCGC
ATTTATTTCCAGGGCTCGATGATGGGCTCCTTGTCACGAGGGCATCTTGC
CAGAGCACTGAACCGTGGGTTGTCACACACACACCCAGAAGGGTTCCTTT
TCCCCGAGGCCCCCCACTCCGCCCTTCTGCGGTGCTTGCGTAATATTATT
TTGTCGCCGTGTTATTTTACATCTGATTTTGCGAGAGATCAGTTGATGCA
TGCATGCATTGCATGCATGCATGCACACATACGAGTTTTGCGAGAGATCA
GTTGGCGAGGATACTTTCATTTTTCATATTATATGGTCTATATGGAAATA
TATACGAAGTATATATATTTTGATTTATTTATTTTCCTTCCTCGCATTTA
TTTCCAGGGCTCGATGATGGGCTCCTTGTCACGAGGGCATCTTGCCAGAG
CACTGAACCGTGGGTTGTCACACACACACCCAGAAGGGTTCCTTTTCCCC
GAGGCCCCCCACTCCGCCCTTCTGCGGTGCTTGCGTAATATTATTTTGTC
GCCGTGTTATTTTACATCTGATTTTGCGAGAGATCAGTTG
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